Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02845

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02840 and ABCV34_RS02845 overlap by 4 nucleotidesABCV34_RS02845 and ABCV34_RS02850 overlap by 8 nucleotidesABCV34_RS02850 and ABCV34_RS02855 are separated by 138 nucleotides ABCV34_RS02840: ABCV34_RS02840 - branched-chain amino acid ABC transporter permease, at 632,651 to 633,691 _RS02840 ABCV34_RS02845: ABCV34_RS02845 - ABC transporter ATP-binding protein, at 633,688 to 634,437 _RS02845 ABCV34_RS02850: ABCV34_RS02850 - ABC transporter ATP-binding protein, at 634,430 to 635,095 _RS02850 ABCV34_RS02855: ABCV34_RS02855 - hemerythrin domain-containing protein, at 635,234 to 635,755 _RS02855 Position (kb) 633 634 635Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 632.747 kb on + strandat 632.747 kb on + strandat 632.747 kb on + strandat 632.747 kb on + strandat 632.748 kb on - strandat 632.748 kb on - strandat 632.748 kb on - strandat 632.748 kb on - strandat 632.748 kb on - strandat 632.748 kb on - strandat 632.748 kb on - strandat 632.748 kb on - strandat 632.777 kb on + strand, within ABCV34_RS02840at 632.777 kb on + strand, within ABCV34_RS02840at 632.778 kb on - strand, within ABCV34_RS02840at 632.778 kb on - strand, within ABCV34_RS02840at 632.778 kb on - strand, within ABCV34_RS02840at 632.778 kb on - strand, within ABCV34_RS02840at 632.798 kb on + strand, within ABCV34_RS02840at 632.798 kb on + strand, within ABCV34_RS02840at 632.798 kb on + strand, within ABCV34_RS02840at 632.798 kb on + strand, within ABCV34_RS02840at 632.798 kb on + strand, within ABCV34_RS02840at 632.799 kb on - strand, within ABCV34_RS02840at 632.799 kb on - strand, within ABCV34_RS02840at 632.915 kb on + strand, within ABCV34_RS02840at 632.915 kb on + strand, within ABCV34_RS02840at 632.915 kb on + strand, within ABCV34_RS02840at 632.915 kb on + strand, within ABCV34_RS02840at 632.915 kb on + strand, within ABCV34_RS02840at 632.915 kb on + strand, within ABCV34_RS02840at 632.915 kb on + strand, within ABCV34_RS02840at 632.916 kb on - strand, within ABCV34_RS02840at 632.916 kb on - strand, within ABCV34_RS02840at 632.918 kb on - strand, within ABCV34_RS02840at 633.080 kb on + strand, within ABCV34_RS02840at 633.080 kb on + strand, within ABCV34_RS02840at 633.080 kb on + strand, within ABCV34_RS02840at 633.080 kb on + strand, within ABCV34_RS02840at 633.200 kb on + strand, within ABCV34_RS02840at 633.200 kb on + strand, within ABCV34_RS02840at 633.200 kb on + strand, within ABCV34_RS02840at 633.201 kb on - strand, within ABCV34_RS02840at 633.201 kb on - strand, within ABCV34_RS02840at 633.251 kb on + strand, within ABCV34_RS02840at 633.252 kb on - strand, within ABCV34_RS02840at 633.252 kb on - strand, within ABCV34_RS02840at 633.252 kb on - strand, within ABCV34_RS02840at 633.252 kb on - strand, within ABCV34_RS02840at 633.252 kb on - strand, within ABCV34_RS02840at 633.252 kb on - strand, within ABCV34_RS02840at 633.252 kb on - strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.286 kb on + strand, within ABCV34_RS02840at 633.287 kb on - strand, within ABCV34_RS02840at 633.287 kb on - strand, within ABCV34_RS02840at 633.287 kb on - strand, within ABCV34_RS02840at 633.287 kb on - strand, within ABCV34_RS02840at 633.347 kb on + strand, within ABCV34_RS02840at 633.347 kb on + strand, within ABCV34_RS02840at 633.347 kb on + strand, within ABCV34_RS02840at 633.348 kb on - strand, within ABCV34_RS02840at 633.348 kb on - strand, within ABCV34_RS02840at 633.365 kb on + strand, within ABCV34_RS02840at 633.488 kb on + strand, within ABCV34_RS02840at 633.488 kb on + strand, within ABCV34_RS02840at 633.488 kb on + strand, within ABCV34_RS02840at 633.489 kb on - strand, within ABCV34_RS02840at 633.489 kb on - strand, within ABCV34_RS02840at 633.489 kb on - strand, within ABCV34_RS02840at 633.489 kb on - strand, within ABCV34_RS02840at 633.530 kb on + strand, within ABCV34_RS02840at 633.530 kb on + strand, within ABCV34_RS02840at 633.531 kb on - strand, within ABCV34_RS02840at 633.531 kb on - strand, within ABCV34_RS02840at 633.558 kb on - strand, within ABCV34_RS02840at 633.936 kb on + strand, within ABCV34_RS02845at 633.936 kb on + strand, within ABCV34_RS02845at 633.936 kb on + strand, within ABCV34_RS02845at 633.936 kb on + strand, within ABCV34_RS02845at 634.135 kb on + strand, within ABCV34_RS02845at 634.332 kb on + strand, within ABCV34_RS02845at 634.333 kb on - strand, within ABCV34_RS02845at 634.333 kb on - strand, within ABCV34_RS02845at 634.414 kb on + strandat 634.414 kb on + strandat 634.414 kb on + strandat 634.415 kb on - strandat 634.573 kb on + strand, within ABCV34_RS02850at 634.574 kb on - strand, within ABCV34_RS02850at 634.574 kb on - strand, within ABCV34_RS02850at 634.574 kb on - strand, within ABCV34_RS02850at 634.696 kb on + strand, within ABCV34_RS02850at 634.696 kb on + strand, within ABCV34_RS02850at 634.772 kb on + strand, within ABCV34_RS02850at 635.063 kb on + strandat 635.064 kb on - strandat 635.074 kb on + strandat 635.309 kb on + strand, within ABCV34_RS02855at 635.309 kb on + strand, within ABCV34_RS02855at 635.309 kb on + strand, within ABCV34_RS02855at 635.309 kb on + strand, within ABCV34_RS02855at 635.309 kb on + strand, within ABCV34_RS02855at 635.310 kb on - strand, within ABCV34_RS02855at 635.310 kb on - strand, within ABCV34_RS02855at 635.310 kb on - strand, within ABCV34_RS02855at 635.310 kb on - strand, within ABCV34_RS02855at 635.310 kb on - strand, within ABCV34_RS02855at 635.310 kb on - strand, within ABCV34_RS02855

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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632,747 + -1.7
632,747 + -5.1
632,747 + -1.4
632,747 + -0.7
632,748 - -2.0
632,748 - -1.0
632,748 - -1.4
632,748 - -1.4
632,748 - -1.0
632,748 - -1.7
632,748 - -4.5
632,748 - +3.5
632,777 + ABCV34_RS02840 0.12 -0.3
632,777 + ABCV34_RS02840 0.12 -1.6
632,778 - ABCV34_RS02840 0.12 -3.4
632,778 - ABCV34_RS02840 0.12 -1.3
632,778 - ABCV34_RS02840 0.12 -1.6
632,778 - ABCV34_RS02840 0.12 -1.0
632,798 + ABCV34_RS02840 0.14 +2.7
632,798 + ABCV34_RS02840 0.14 -2.3
632,798 + ABCV34_RS02840 0.14 +1.1
632,798 + ABCV34_RS02840 0.14 +1.0
632,798 + ABCV34_RS02840 0.14 +0.9
632,799 - ABCV34_RS02840 0.14 -1.0
632,799 - ABCV34_RS02840 0.14 +3.2
632,915 + ABCV34_RS02840 0.25 -2.0
632,915 + ABCV34_RS02840 0.25 -2.0
632,915 + ABCV34_RS02840 0.25 -2.1
632,915 + ABCV34_RS02840 0.25 -2.4
632,915 + ABCV34_RS02840 0.25 -2.2
632,915 + ABCV34_RS02840 0.25 +2.4
632,915 + ABCV34_RS02840 0.25 -2.5
632,916 - ABCV34_RS02840 0.25 +0.1
632,916 - ABCV34_RS02840 0.25 -3.6
632,918 - ABCV34_RS02840 0.26 -2.3
633,080 + ABCV34_RS02840 0.41 -1.9
633,080 + ABCV34_RS02840 0.41 -1.7
633,080 + ABCV34_RS02840 0.41 -1.2
633,080 + ABCV34_RS02840 0.41 -1.0
633,200 + ABCV34_RS02840 0.53 -0.3
633,200 + ABCV34_RS02840 0.53 -1.3
633,200 + ABCV34_RS02840 0.53 -2.4
633,201 - ABCV34_RS02840 0.53 +0.8
633,201 - ABCV34_RS02840 0.53 -0.1
633,251 + ABCV34_RS02840 0.58 -2.0
633,252 - ABCV34_RS02840 0.58 +1.0
633,252 - ABCV34_RS02840 0.58 +0.4
633,252 - ABCV34_RS02840 0.58 -1.8
633,252 - ABCV34_RS02840 0.58 -1.8
633,252 - ABCV34_RS02840 0.58 -1.2
633,252 - ABCV34_RS02840 0.58 -1.4
633,252 - ABCV34_RS02840 0.58 -1.3
633,286 + ABCV34_RS02840 0.61 -0.8
633,286 + ABCV34_RS02840 0.61 -3.8
633,286 + ABCV34_RS02840 0.61 +0.3
633,286 + ABCV34_RS02840 0.61 +0.2
633,286 + ABCV34_RS02840 0.61 +0.1
633,286 + ABCV34_RS02840 0.61 -2.2
633,286 + ABCV34_RS02840 0.61 -3.7
633,286 + ABCV34_RS02840 0.61 +0.4
633,287 - ABCV34_RS02840 0.61 +1.7
633,287 - ABCV34_RS02840 0.61 -1.7
633,287 - ABCV34_RS02840 0.61 -1.3
633,287 - ABCV34_RS02840 0.61 -2.0
633,347 + ABCV34_RS02840 0.67 -2.4
633,347 + ABCV34_RS02840 0.67 +3.6
633,347 + ABCV34_RS02840 0.67 -2.1
633,348 - ABCV34_RS02840 0.67 -2.6
633,348 - ABCV34_RS02840 0.67 -2.8
633,365 + ABCV34_RS02840 0.69 -1.2
633,488 + ABCV34_RS02840 0.80 -2.6
633,488 + ABCV34_RS02840 0.80 -1.9
633,488 + ABCV34_RS02840 0.80 -0.0
633,489 - ABCV34_RS02840 0.80 -3.8
633,489 - ABCV34_RS02840 0.80 -2.8
633,489 - ABCV34_RS02840 0.80 -0.6
633,489 - ABCV34_RS02840 0.80 -2.5
633,530 + ABCV34_RS02840 0.84 -1.7
633,530 + ABCV34_RS02840 0.84 +0.1
633,531 - ABCV34_RS02840 0.85 -1.4
633,531 - ABCV34_RS02840 0.85 -2.8
633,558 - ABCV34_RS02840 0.87 -2.4
633,936 + ABCV34_RS02845 0.33 -1.1
633,936 + ABCV34_RS02845 0.33 -1.9
633,936 + ABCV34_RS02845 0.33 +1.4
633,936 + ABCV34_RS02845 0.33 -1.6
634,135 + ABCV34_RS02845 0.60 -1.7
634,332 + ABCV34_RS02845 0.86 -1.6
634,333 - ABCV34_RS02845 0.86 +3.2
634,333 - ABCV34_RS02845 0.86 -1.9
634,414 + -1.6
634,414 + -3.3
634,414 + -1.3
634,415 - -1.4
634,573 + ABCV34_RS02850 0.21 -1.3
634,574 - ABCV34_RS02850 0.22 +0.8
634,574 - ABCV34_RS02850 0.22 -2.4
634,574 - ABCV34_RS02850 0.22 -3.1
634,696 + ABCV34_RS02850 0.40 -0.1
634,696 + ABCV34_RS02850 0.40 -3.7
634,772 + ABCV34_RS02850 0.51 -0.5
635,063 + -4.1
635,064 - -0.6
635,074 + -1.5
635,309 + ABCV34_RS02855 0.14 -2.3
635,309 + ABCV34_RS02855 0.14 -3.3
635,309 + ABCV34_RS02855 0.14 +2.7
635,309 + ABCV34_RS02855 0.14 -1.7
635,309 + ABCV34_RS02855 0.14 +1.8
635,310 - ABCV34_RS02855 0.15 +1.4
635,310 - ABCV34_RS02855 0.15 -0.8
635,310 - ABCV34_RS02855 0.15 -0.6
635,310 - ABCV34_RS02855 0.15 -2.7
635,310 - ABCV34_RS02855 0.15 -1.3
635,310 - ABCV34_RS02855 0.15 -0.5

Or see this region's nucleotide sequence