Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02750 and ABCV34_RS02755 are separated by 16 nucleotides ABCV34_RS02755 and ABCV34_RS02760 are separated by 173 nucleotides ABCV34_RS02760 and ABCV34_RS02765 are separated by 125 nucleotides
ABCV34_RS02750: ABCV34_RS02750 - class III extradiol dioxygenase family protein, at 615,441 to 616,292
_RS02750
ABCV34_RS02755: ABCV34_RS02755 - alpha/beta fold hydrolase, at 616,309 to 617,028
_RS02755
ABCV34_RS02760: ABCV34_RS02760 - MarR family transcriptional regulator, at 617,202 to 617,717
_RS02760
ABCV34_RS02765: ABCV34_RS02765 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 617,843 to 618,892
_RS02765
Position (kb) 617
618 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 616.209 kb on - strand at 616.237 kb on - strand at 616.237 kb on - strand at 616.427 kb on - strand, within ABCV34_RS02755 at 616.850 kb on - strand, within ABCV34_RS02755 at 616.971 kb on + strand at 617.028 kb on + strand at 617.028 kb on + strand at 617.028 kb on + strand at 617.028 kb on + strand at 617.028 kb on + strand at 617.028 kb on + strand at 617.028 kb on + strand at 617.028 kb on + strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.029 kb on - strand at 617.032 kb on + strand at 617.032 kb on + strand at 617.032 kb on + strand at 617.032 kb on + strand at 617.032 kb on + strand at 617.121 kb on + strand at 617.220 kb on + strand at 617.221 kb on - strand at 617.232 kb on + strand at 617.232 kb on + strand at 617.232 kb on + strand at 617.232 kb on + strand at 617.232 kb on + strand at 617.232 kb on + strand at 617.232 kb on + strand at 617.233 kb on - strand at 617.233 kb on - strand at 617.233 kb on - strand at 617.233 kb on - strand at 617.233 kb on - strand at 617.233 kb on - strand at 617.233 kb on - strand at 617.235 kb on - strand at 617.326 kb on - strand, within ABCV34_RS02760 at 617.326 kb on - strand, within ABCV34_RS02760 at 617.486 kb on + strand, within ABCV34_RS02760 at 617.486 kb on + strand, within ABCV34_RS02760 at 617.486 kb on + strand, within ABCV34_RS02760 at 617.701 kb on + strand at 617.701 kb on + strand at 617.701 kb on + strand at 617.701 kb on + strand at 617.701 kb on + strand at 617.702 kb on - strand at 617.702 kb on - strand at 617.702 kb on - strand at 617.702 kb on - strand at 617.702 kb on - strand at 617.715 kb on + strand at 617.716 kb on - strand at 617.754 kb on + strand at 617.754 kb on + strand at 617.754 kb on + strand at 617.755 kb on - strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.759 kb on + strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.760 kb on - strand at 617.785 kb on + strand at 617.864 kb on + strand at 617.864 kb on + strand at 617.864 kb on + strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.865 kb on - strand at 617.868 kb on + strand at 617.869 kb on - strand at 617.869 kb on - strand at 617.875 kb on + strand at 617.875 kb on + strand at 617.875 kb on + strand at 617.875 kb on + strand at 617.875 kb on + strand at 617.875 kb on + strand at 617.875 kb on + strand at 617.875 kb on + strand at 617.876 kb on - strand at 617.876 kb on - strand at 617.876 kb on - strand at 617.876 kb on - strand at 617.876 kb on - strand at 617.939 kb on + strand at 617.940 kb on - strand at 618.033 kb on + strand, within ABCV34_RS02765 at 618.033 kb on + strand, within ABCV34_RS02765 at 618.033 kb on + strand, within ABCV34_RS02765 at 618.034 kb on - strand, within ABCV34_RS02765 at 618.034 kb on - strand, within ABCV34_RS02765 at 618.034 kb on - strand, within ABCV34_RS02765 at 618.034 kb on - strand, within ABCV34_RS02765 at 618.034 kb on - strand, within ABCV34_RS02765 at 618.034 kb on - strand, within ABCV34_RS02765 at 618.044 kb on + strand, within ABCV34_RS02765 at 618.045 kb on - strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.124 kb on + strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.125 kb on - strand, within ABCV34_RS02765 at 618.128 kb on + strand, within ABCV34_RS02765 at 618.128 kb on + strand, within ABCV34_RS02765 at 618.129 kb on - strand, within ABCV34_RS02765 at 618.254 kb on + strand, within ABCV34_RS02765 at 618.254 kb on + strand, within ABCV34_RS02765 at 618.259 kb on + strand, within ABCV34_RS02765 at 618.259 kb on + strand, within ABCV34_RS02765 at 618.259 kb on + strand, within ABCV34_RS02765 at 618.260 kb on - strand, within ABCV34_RS02765 at 618.260 kb on - strand, within ABCV34_RS02765 at 618.289 kb on + strand, within ABCV34_RS02765 at 618.317 kb on + strand, within ABCV34_RS02765 at 618.317 kb on + strand, within ABCV34_RS02765 at 618.317 kb on + strand, within ABCV34_RS02765 at 618.317 kb on + strand, within ABCV34_RS02765 at 618.317 kb on + strand, within ABCV34_RS02765 at 618.318 kb on - strand, within ABCV34_RS02765 at 618.318 kb on - strand, within ABCV34_RS02765 at 618.318 kb on - strand, within ABCV34_RS02765 at 618.318 kb on - strand, within ABCV34_RS02765 at 618.318 kb on - strand, within ABCV34_RS02765 at 618.318 kb on - strand, within ABCV34_RS02765 at 618.644 kb on + strand, within ABCV34_RS02765 at 618.644 kb on + strand, within ABCV34_RS02765 at 618.644 kb on + strand, within ABCV34_RS02765 at 618.644 kb on + strand, within ABCV34_RS02765 at 618.644 kb on + strand, within ABCV34_RS02765 at 618.645 kb on - strand, within ABCV34_RS02765 at 618.645 kb on - strand, within ABCV34_RS02765 at 618.645 kb on - strand, within ABCV34_RS02765 at 618.645 kb on - strand, within ABCV34_RS02765 at 618.645 kb on - strand, within ABCV34_RS02765 at 618.645 kb on - strand, within ABCV34_RS02765 at 618.700 kb on + strand, within ABCV34_RS02765 at 618.701 kb on - strand, within ABCV34_RS02765 at 618.701 kb on - strand, within ABCV34_RS02765
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 616,209 - -3.0 616,237 - +0.9 616,237 - -1.3 616,427 - ABCV34_RS02755 0.16 -3.1 616,850 - ABCV34_RS02755 0.75 -1.6 616,971 + -2.4 617,028 + -3.0 617,028 + -0.1 617,028 + -1.7 617,028 + -3.0 617,028 + +0.8 617,028 + -1.9 617,028 + -0.2 617,028 + -0.4 617,029 - -0.7 617,029 - +0.0 617,029 - -2.7 617,029 - -1.7 617,029 - +0.4 617,029 - -1.4 617,029 - -2.4 617,029 - -3.1 617,029 - -1.3 617,029 - -3.5 617,029 - -3.8 617,029 - +0.2 617,029 - +2.2 617,029 - -2.5 617,029 - -0.3 617,029 - -1.8 617,032 + -1.9 617,032 + +4.1 617,032 + -1.4 617,032 + -3.9 617,032 + -2.0 617,121 + -0.9 617,220 + -0.6 617,221 - -0.6 617,232 + -0.1 617,232 + -4.2 617,232 + -0.1 617,232 + +0.0 617,232 + -1.2 617,232 + +0.1 617,232 + +0.0 617,233 - -2.1 617,233 - -2.9 617,233 - +1.2 617,233 - -1.3 617,233 - -0.3 617,233 - -1.4 617,233 - -3.0 617,235 - +0.2 617,326 - ABCV34_RS02760 0.24 +2.1 617,326 - ABCV34_RS02760 0.24 -0.2 617,486 + ABCV34_RS02760 0.55 +1.0 617,486 + ABCV34_RS02760 0.55 -0.0 617,486 + ABCV34_RS02760 0.55 +0.3 617,701 + -0.3 617,701 + -0.1 617,701 + -4.5 617,701 + -0.2 617,701 + -1.3 617,702 - -0.7 617,702 - +1.0 617,702 - -0.6 617,702 - -1.3 617,702 - -0.7 617,715 + +0.4 617,716 - -4.4 617,754 + -2.1 617,754 + -0.1 617,754 + -0.3 617,755 - -3.2 617,759 + -0.4 617,759 + +0.9 617,759 + -3.3 617,759 + +2.3 617,759 + -1.8 617,759 + -0.6 617,759 + -1.6 617,759 + -2.0 617,759 + +0.0 617,759 + -1.2 617,759 + +0.9 617,759 + -2.3 617,759 + -1.5 617,759 + +0.1 617,759 + -3.9 617,759 + +1.1 617,759 + -1.2 617,759 + -1.6 617,759 + +0.4 617,759 + +0.8 617,759 + -1.3 617,759 + -1.4 617,759 + -0.6 617,759 + -0.1 617,759 + -0.6 617,759 + +1.9 617,759 + -3.3 617,760 - -3.7 617,760 - -1.3 617,760 - -0.5 617,760 - +0.6 617,760 - -1.3 617,760 - -1.5 617,760 - -1.2 617,760 - +0.3 617,760 - -1.7 617,760 - +1.2 617,760 - -0.2 617,760 - -2.2 617,760 - -1.6 617,760 - -0.9 617,760 - -0.8 617,760 - -3.5 617,785 + -3.4 617,864 + -0.8 617,864 + -1.0 617,864 + -2.0 617,865 - +0.1 617,865 - -1.5 617,865 - -0.4 617,865 - -1.9 617,865 - -0.1 617,865 - -2.4 617,865 - -2.2 617,865 - +1.5 617,865 - -3.3 617,868 + -0.3 617,869 - -0.9 617,869 - -1.1 617,875 + -0.8 617,875 + -3.7 617,875 + +0.2 617,875 + +0.1 617,875 + -2.9 617,875 + -1.6 617,875 + -1.8 617,875 + +0.3 617,876 - -0.5 617,876 - -2.7 617,876 - -0.8 617,876 - -0.9 617,876 - -1.9 617,939 + +1.0 617,940 - -3.1 618,033 + ABCV34_RS02765 0.18 -0.3 618,033 + ABCV34_RS02765 0.18 -3.0 618,033 + ABCV34_RS02765 0.18 -2.4 618,034 - ABCV34_RS02765 0.18 -2.6 618,034 - ABCV34_RS02765 0.18 -1.1 618,034 - ABCV34_RS02765 0.18 +1.8 618,034 - ABCV34_RS02765 0.18 +0.1 618,034 - ABCV34_RS02765 0.18 -1.8 618,034 - ABCV34_RS02765 0.18 -1.8 618,044 + ABCV34_RS02765 0.19 +1.1 618,045 - ABCV34_RS02765 0.19 -2.4 618,124 + ABCV34_RS02765 0.27 -1.8 618,124 + ABCV34_RS02765 0.27 -1.0 618,124 + ABCV34_RS02765 0.27 -2.0 618,124 + ABCV34_RS02765 0.27 +2.4 618,124 + ABCV34_RS02765 0.27 -3.8 618,124 + ABCV34_RS02765 0.27 -2.3 618,124 + ABCV34_RS02765 0.27 -1.7 618,124 + ABCV34_RS02765 0.27 -4.4 618,124 + ABCV34_RS02765 0.27 -4.4 618,124 + ABCV34_RS02765 0.27 -1.4 618,124 + ABCV34_RS02765 0.27 -3.3 618,124 + ABCV34_RS02765 0.27 -1.4 618,124 + ABCV34_RS02765 0.27 +1.0 618,124 + ABCV34_RS02765 0.27 -1.8 618,124 + ABCV34_RS02765 0.27 -1.5 618,125 - ABCV34_RS02765 0.27 -2.7 618,125 - ABCV34_RS02765 0.27 -1.7 618,125 - ABCV34_RS02765 0.27 -2.1 618,125 - ABCV34_RS02765 0.27 -2.9 618,125 - ABCV34_RS02765 0.27 -4.0 618,125 - ABCV34_RS02765 0.27 -4.3 618,125 - ABCV34_RS02765 0.27 -3.4 618,125 - ABCV34_RS02765 0.27 -3.9 618,125 - ABCV34_RS02765 0.27 -2.4 618,125 - ABCV34_RS02765 0.27 -3.7 618,125 - ABCV34_RS02765 0.27 -2.6 618,125 - ABCV34_RS02765 0.27 -2.7 618,125 - ABCV34_RS02765 0.27 -0.3 618,125 - ABCV34_RS02765 0.27 -0.6 618,125 - ABCV34_RS02765 0.27 -2.4 618,125 - ABCV34_RS02765 0.27 -3.3 618,125 - ABCV34_RS02765 0.27 -2.3 618,125 - ABCV34_RS02765 0.27 +0.4 618,125 - ABCV34_RS02765 0.27 +2.7 618,125 - ABCV34_RS02765 0.27 +0.2 618,125 - ABCV34_RS02765 0.27 -3.1 618,125 - ABCV34_RS02765 0.27 -0.8 618,128 + ABCV34_RS02765 0.27 +0.1 618,128 + ABCV34_RS02765 0.27 -3.2 618,129 - ABCV34_RS02765 0.27 -1.2 618,254 + ABCV34_RS02765 0.39 -0.8 618,254 + ABCV34_RS02765 0.39 -1.7 618,259 + ABCV34_RS02765 0.40 -0.7 618,259 + ABCV34_RS02765 0.40 -4.1 618,259 + ABCV34_RS02765 0.40 -2.6 618,260 - ABCV34_RS02765 0.40 -3.0 618,260 - ABCV34_RS02765 0.40 -0.6 618,289 + ABCV34_RS02765 0.42 -2.5 618,317 + ABCV34_RS02765 0.45 +0.4 618,317 + ABCV34_RS02765 0.45 -4.6 618,317 + ABCV34_RS02765 0.45 -1.6 618,317 + ABCV34_RS02765 0.45 -0.3 618,317 + ABCV34_RS02765 0.45 -1.0 618,318 - ABCV34_RS02765 0.45 -3.1 618,318 - ABCV34_RS02765 0.45 -1.5 618,318 - ABCV34_RS02765 0.45 -2.6 618,318 - ABCV34_RS02765 0.45 -2.0 618,318 - ABCV34_RS02765 0.45 +0.5 618,318 - ABCV34_RS02765 0.45 +1.1 618,644 + ABCV34_RS02765 0.76 -2.3 618,644 + ABCV34_RS02765 0.76 -1.1 618,644 + ABCV34_RS02765 0.76 -1.0 618,644 + ABCV34_RS02765 0.76 +1.1 618,644 + ABCV34_RS02765 0.76 -2.2 618,645 - ABCV34_RS02765 0.76 -2.2 618,645 - ABCV34_RS02765 0.76 +0.4 618,645 - ABCV34_RS02765 0.76 -1.9 618,645 - ABCV34_RS02765 0.76 -0.9 618,645 - ABCV34_RS02765 0.76 +1.3 618,645 - ABCV34_RS02765 0.76 -1.4 618,700 + ABCV34_RS02765 0.82 -4.5 618,701 - ABCV34_RS02765 0.82 -1.9 618,701 - ABCV34_RS02765 0.82 -1.3
Or see this region's nucleotide sequence