Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02310

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02300 and ABCV34_RS02305 are separated by 6 nucleotidesABCV34_RS02305 and ABCV34_RS02310 are separated by 141 nucleotidesABCV34_RS02310 and ABCV34_RS02315 are separated by 79 nucleotides ABCV34_RS02300: ABCV34_RS02300 - threonine synthase, at 512,645 to 514,045 _RS02300 ABCV34_RS02305: ABCV34_RS02305 - Lrp/AsnC family transcriptional regulator, at 514,052 to 514,477 _RS02305 ABCV34_RS02310: ABCV34_RS02310 - ornithine cyclodeaminase, at 514,619 to 515,701 _RS02310 ABCV34_RS02315: ABCV34_RS02315 - arginase, at 515,781 to 516,698 _RS02315 Position (kb) 514 515 516Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.065 kb on + strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.066 kb on - strandat 514.127 kb on + strand, within ABCV34_RS02305at 514.128 kb on - strand, within ABCV34_RS02305at 514.128 kb on - strand, within ABCV34_RS02305at 514.128 kb on - strand, within ABCV34_RS02305at 514.130 kb on + strand, within ABCV34_RS02305at 514.130 kb on + strand, within ABCV34_RS02305at 514.130 kb on + strand, within ABCV34_RS02305at 514.130 kb on + strand, within ABCV34_RS02305at 514.130 kb on + strand, within ABCV34_RS02305at 514.130 kb on + strand, within ABCV34_RS02305at 514.131 kb on - strand, within ABCV34_RS02305at 514.131 kb on - strand, within ABCV34_RS02305at 514.131 kb on - strand, within ABCV34_RS02305at 514.131 kb on - strand, within ABCV34_RS02305at 514.131 kb on - strand, within ABCV34_RS02305at 514.131 kb on - strand, within ABCV34_RS02305at 514.329 kb on + strand, within ABCV34_RS02305at 514.329 kb on + strand, within ABCV34_RS02305at 514.330 kb on - strand, within ABCV34_RS02305at 514.442 kb on + strandat 514.529 kb on + strandat 514.557 kb on + strandat 514.557 kb on + strandat 514.558 kb on - strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.562 kb on - strandat 514.562 kb on - strandat 514.562 kb on - strandat 514.562 kb on - strandat 514.562 kb on - strandat 514.562 kb on - strandat 514.582 kb on + strandat 514.582 kb on + strandat 514.582 kb on + strandat 514.582 kb on + strandat 514.583 kb on - strandat 514.583 kb on - strandat 514.583 kb on - strandat 514.699 kb on + strandat 514.699 kb on + strandat 514.700 kb on - strandat 514.745 kb on + strand, within ABCV34_RS02310at 514.746 kb on - strand, within ABCV34_RS02310at 514.841 kb on + strand, within ABCV34_RS02310at 514.841 kb on + strand, within ABCV34_RS02310at 514.842 kb on - strand, within ABCV34_RS02310at 514.842 kb on - strand, within ABCV34_RS02310at 514.842 kb on - strand, within ABCV34_RS02310at 515.123 kb on + strand, within ABCV34_RS02310at 515.123 kb on + strand, within ABCV34_RS02310at 515.123 kb on + strand, within ABCV34_RS02310at 515.123 kb on + strand, within ABCV34_RS02310at 515.124 kb on - strand, within ABCV34_RS02310at 515.124 kb on - strand, within ABCV34_RS02310at 515.124 kb on - strand, within ABCV34_RS02310at 515.124 kb on - strand, within ABCV34_RS02310at 515.245 kb on + strand, within ABCV34_RS02310at 515.246 kb on - strand, within ABCV34_RS02310at 515.246 kb on - strand, within ABCV34_RS02310at 515.246 kb on - strand, within ABCV34_RS02310at 515.246 kb on - strand, within ABCV34_RS02310at 515.246 kb on - strand, within ABCV34_RS02310at 515.246 kb on - strand, within ABCV34_RS02310at 515.267 kb on + strand, within ABCV34_RS02310at 515.526 kb on + strand, within ABCV34_RS02310at 515.526 kb on + strand, within ABCV34_RS02310at 515.527 kb on - strand, within ABCV34_RS02310at 515.558 kb on + strand, within ABCV34_RS02310at 515.559 kb on - strand, within ABCV34_RS02310at 515.559 kb on - strand, within ABCV34_RS02310at 515.559 kb on - strand, within ABCV34_RS02310at 515.602 kb on + strandat 515.654 kb on + strandat 515.654 kb on + strandat 515.654 kb on + strandat 515.654 kb on + strandat 515.655 kb on - strandat 515.655 kb on - strandat 515.655 kb on - strandat 515.655 kb on - strandat 515.655 kb on - strandat 515.702 kb on + strandat 515.702 kb on + strandat 515.703 kb on - strandat 515.703 kb on - strandat 515.703 kb on - strandat 515.703 kb on - strandat 515.703 kb on - strandat 516.162 kb on - strand, within ABCV34_RS02315at 516.308 kb on + strand, within ABCV34_RS02315at 516.314 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.366 kb on + strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.367 kb on - strand, within ABCV34_RS02315at 516.446 kb on + strand, within ABCV34_RS02315at 516.486 kb on + strand, within ABCV34_RS02315at 516.487 kb on - strand, within ABCV34_RS02315

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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514,065 + -1.3
514,065 + -1.3
514,065 + -1.6
514,065 + -2.8
514,065 + -2.2
514,065 + -3.3
514,065 + -0.2
514,065 + -2.5
514,065 + -0.2
514,065 + -3.9
514,065 + -1.6
514,066 - +0.5
514,066 - -1.5
514,066 - -0.9
514,066 - +0.2
514,066 - -0.3
514,066 - -0.3
514,066 - -4.2
514,066 - -2.2
514,066 - -2.0
514,127 + ABCV34_RS02305 0.18 -1.6
514,128 - ABCV34_RS02305 0.18 -3.0
514,128 - ABCV34_RS02305 0.18 -1.7
514,128 - ABCV34_RS02305 0.18 -1.3
514,130 + ABCV34_RS02305 0.18 +0.6
514,130 + ABCV34_RS02305 0.18 -2.9
514,130 + ABCV34_RS02305 0.18 -2.8
514,130 + ABCV34_RS02305 0.18 -1.6
514,130 + ABCV34_RS02305 0.18 -1.3
514,130 + ABCV34_RS02305 0.18 +0.8
514,131 - ABCV34_RS02305 0.19 -1.0
514,131 - ABCV34_RS02305 0.19 -1.7
514,131 - ABCV34_RS02305 0.19 -2.8
514,131 - ABCV34_RS02305 0.19 -0.6
514,131 - ABCV34_RS02305 0.19 -0.6
514,131 - ABCV34_RS02305 0.19 -0.1
514,329 + ABCV34_RS02305 0.65 -1.0
514,329 + ABCV34_RS02305 0.65 -1.1
514,330 - ABCV34_RS02305 0.65 -1.4
514,442 + -2.8
514,529 + -1.9
514,557 + -1.3
514,557 + -3.3
514,558 - -4.3
514,561 + -1.3
514,561 + -2.2
514,561 + -0.9
514,561 + -2.6
514,562 - -2.3
514,562 - -1.8
514,562 - -1.6
514,562 - -1.6
514,562 - -1.3
514,562 - -0.4
514,582 + -2.4
514,582 + -1.9
514,582 + +0.5
514,582 + -0.3
514,583 - +1.0
514,583 - -0.4
514,583 - -0.6
514,699 + -2.9
514,699 + +0.2
514,700 - -1.1
514,745 + ABCV34_RS02310 0.12 +0.3
514,746 - ABCV34_RS02310 0.12 +1.8
514,841 + ABCV34_RS02310 0.20 +2.0
514,841 + ABCV34_RS02310 0.20 -3.1
514,842 - ABCV34_RS02310 0.21 -1.7
514,842 - ABCV34_RS02310 0.21 -2.7
514,842 - ABCV34_RS02310 0.21 -1.3
515,123 + ABCV34_RS02310 0.47 -0.1
515,123 + ABCV34_RS02310 0.47 -0.4
515,123 + ABCV34_RS02310 0.47 -1.9
515,123 + ABCV34_RS02310 0.47 -1.1
515,124 - ABCV34_RS02310 0.47 +0.4
515,124 - ABCV34_RS02310 0.47 -2.9
515,124 - ABCV34_RS02310 0.47 +0.8
515,124 - ABCV34_RS02310 0.47 -1.5
515,245 + ABCV34_RS02310 0.58 +1.4
515,246 - ABCV34_RS02310 0.58 -0.4
515,246 - ABCV34_RS02310 0.58 -4.3
515,246 - ABCV34_RS02310 0.58 -2.7
515,246 - ABCV34_RS02310 0.58 -1.8
515,246 - ABCV34_RS02310 0.58 -0.2
515,246 - ABCV34_RS02310 0.58 -2.7
515,267 + ABCV34_RS02310 0.60 +1.0
515,526 + ABCV34_RS02310 0.84 +0.6
515,526 + ABCV34_RS02310 0.84 -0.8
515,527 - ABCV34_RS02310 0.84 -1.1
515,558 + ABCV34_RS02310 0.87 -1.6
515,559 - ABCV34_RS02310 0.87 -0.9
515,559 - ABCV34_RS02310 0.87 -0.6
515,559 - ABCV34_RS02310 0.87 -0.9
515,602 + -1.5
515,654 + -0.4
515,654 + -2.4
515,654 + -4.0
515,654 + -2.3
515,655 - -0.8
515,655 - +0.5
515,655 - -0.3
515,655 - -0.5
515,655 - -5.1
515,702 + +0.1
515,702 + +1.5
515,703 - -0.2
515,703 - -0.4
515,703 - -1.9
515,703 - +2.0
515,703 - +0.9
516,162 - ABCV34_RS02315 0.42 -0.0
516,308 + ABCV34_RS02315 0.57 -1.2
516,314 + ABCV34_RS02315 0.58 -1.2
516,366 + ABCV34_RS02315 0.64 +0.0
516,366 + ABCV34_RS02315 0.64 +0.1
516,366 + ABCV34_RS02315 0.64 -4.2
516,366 + ABCV34_RS02315 0.64 +0.3
516,366 + ABCV34_RS02315 0.64 -0.1
516,366 + ABCV34_RS02315 0.64 -0.6
516,366 + ABCV34_RS02315 0.64 +1.3
516,366 + ABCV34_RS02315 0.64 -4.6
516,366 + ABCV34_RS02315 0.64 +1.0
516,366 + ABCV34_RS02315 0.64 -3.5
516,366 + ABCV34_RS02315 0.64 -1.2
516,366 + ABCV34_RS02315 0.64 -0.8
516,367 - ABCV34_RS02315 0.64 -1.1
516,367 - ABCV34_RS02315 0.64 -2.2
516,367 - ABCV34_RS02315 0.64 -3.7
516,367 - ABCV34_RS02315 0.64 -0.8
516,367 - ABCV34_RS02315 0.64 -0.2
516,367 - ABCV34_RS02315 0.64 -0.6
516,367 - ABCV34_RS02315 0.64 +1.0
516,367 - ABCV34_RS02315 0.64 +0.6
516,367 - ABCV34_RS02315 0.64 -2.1
516,367 - ABCV34_RS02315 0.64 -0.8
516,367 - ABCV34_RS02315 0.64 -3.5
516,367 - ABCV34_RS02315 0.64 -4.5
516,367 - ABCV34_RS02315 0.64 -4.1
516,367 - ABCV34_RS02315 0.64 -2.8
516,367 - ABCV34_RS02315 0.64 -2.3
516,367 - ABCV34_RS02315 0.64 -0.6
516,367 - ABCV34_RS02315 0.64 -2.5
516,446 + ABCV34_RS02315 0.72 -2.3
516,486 + ABCV34_RS02315 0.77 +0.4
516,487 - ABCV34_RS02315 0.77 -0.3

Or see this region's nucleotide sequence