Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02145 and ABCV34_RS02150 are separated by 135 nucleotides ABCV34_RS02150 and ABCV34_RS02155 are separated by 146 nucleotides
ABCV34_RS02145: ABCV34_RS02145 - DMT family transporter, at 482,210 to 483,124
_RS02145
ABCV34_RS02150: ABCV34_RS02150 - helix-turn-helix domain-containing protein, at 483,260 to 483,934
_RS02150
ABCV34_RS02155: ABCV34_RS02155 - catalase, at 484,081 to 485,517
_RS02155
Position (kb) 483
484 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 482.271 kb on + strand at 482.271 kb on + strand at 482.297 kb on + strand at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.401 kb on - strand, within ABCV34_RS02145 at 482.583 kb on + strand, within ABCV34_RS02145 at 482.583 kb on + strand, within ABCV34_RS02145 at 482.583 kb on + strand, within ABCV34_RS02145 at 482.584 kb on - strand, within ABCV34_RS02145 at 482.593 kb on - strand, within ABCV34_RS02145 at 482.673 kb on - strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.978 kb on + strand, within ABCV34_RS02145 at 482.986 kb on - strand, within ABCV34_RS02145 at 483.178 kb on - strand at 483.192 kb on + strand at 483.192 kb on + strand at 483.193 kb on - strand at 483.193 kb on - strand at 483.193 kb on - strand at 483.426 kb on + strand, within ABCV34_RS02150 at 483.426 kb on + strand, within ABCV34_RS02150 at 483.426 kb on + strand, within ABCV34_RS02150 at 483.427 kb on - strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.564 kb on - strand, within ABCV34_RS02150 at 483.564 kb on - strand, within ABCV34_RS02150 at 483.564 kb on - strand, within ABCV34_RS02150 at 483.750 kb on + strand, within ABCV34_RS02150 at 483.750 kb on + strand, within ABCV34_RS02150 at 483.750 kb on + strand, within ABCV34_RS02150 at 483.897 kb on + strand at 483.897 kb on + strand at 483.898 kb on - strand at 483.898 kb on - strand at 483.898 kb on - strand at 483.898 kb on - strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.902 kb on - strand at 483.902 kb on - strand at 483.902 kb on - strand at 483.936 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.973 kb on + strand at 484.395 kb on + strand, within ABCV34_RS02155 at 484.395 kb on + strand, within ABCV34_RS02155 at 484.420 kb on + strand, within ABCV34_RS02155 at 484.420 kb on + strand, within ABCV34_RS02155 at 484.420 kb on + strand, within ABCV34_RS02155 at 484.421 kb on - strand, within ABCV34_RS02155 at 484.421 kb on - strand, within ABCV34_RS02155 at 484.421 kb on - strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.459 kb on - strand, within ABCV34_RS02155 at 484.459 kb on - strand, within ABCV34_RS02155 at 484.807 kb on + strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.885 kb on + strand, within ABCV34_RS02155 at 484.885 kb on + strand, within ABCV34_RS02155
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 482,271 + +0.1 482,271 + -1.0 482,297 + -2.5 482,400 + ABCV34_RS02145 0.21 -1.2 482,400 + ABCV34_RS02145 0.21 -0.6 482,400 + ABCV34_RS02145 0.21 -1.9 482,400 + ABCV34_RS02145 0.21 -0.8 482,400 + ABCV34_RS02145 0.21 +0.3 482,400 + ABCV34_RS02145 0.21 -1.0 482,400 + ABCV34_RS02145 0.21 +0.9 482,401 - ABCV34_RS02145 0.21 -2.5 482,583 + ABCV34_RS02145 0.41 -2.7 482,583 + ABCV34_RS02145 0.41 -3.5 482,583 + ABCV34_RS02145 0.41 -1.3 482,584 - ABCV34_RS02145 0.41 +1.8 482,593 - ABCV34_RS02145 0.42 -1.0 482,673 - ABCV34_RS02145 0.51 -0.8 482,838 + ABCV34_RS02145 0.69 -1.0 482,838 + ABCV34_RS02145 0.69 -1.3 482,838 + ABCV34_RS02145 0.69 -0.0 482,838 + ABCV34_RS02145 0.69 -1.1 482,934 + ABCV34_RS02145 0.79 -2.3 482,934 + ABCV34_RS02145 0.79 -2.2 482,934 + ABCV34_RS02145 0.79 -0.9 482,934 + ABCV34_RS02145 0.79 +0.9 482,934 + ABCV34_RS02145 0.79 -1.5 482,934 + ABCV34_RS02145 0.79 -0.5 482,934 + ABCV34_RS02145 0.79 -1.8 482,934 + ABCV34_RS02145 0.79 +2.8 482,934 + ABCV34_RS02145 0.79 -1.6 482,934 + ABCV34_RS02145 0.79 -1.0 482,934 + ABCV34_RS02145 0.79 -4.2 482,935 - ABCV34_RS02145 0.79 -1.5 482,935 - ABCV34_RS02145 0.79 -4.3 482,935 - ABCV34_RS02145 0.79 -0.4 482,935 - ABCV34_RS02145 0.79 -1.0 482,935 - ABCV34_RS02145 0.79 -2.9 482,935 - ABCV34_RS02145 0.79 -3.7 482,935 - ABCV34_RS02145 0.79 +1.5 482,935 - ABCV34_RS02145 0.79 -1.2 482,978 + ABCV34_RS02145 0.84 -0.6 482,986 - ABCV34_RS02145 0.85 -0.6 483,178 - -0.9 483,192 + -0.8 483,192 + +0.6 483,193 - -1.7 483,193 - -1.2 483,193 - -2.5 483,426 + ABCV34_RS02150 0.25 +0.7 483,426 + ABCV34_RS02150 0.25 -1.0 483,426 + ABCV34_RS02150 0.25 +0.9 483,427 - ABCV34_RS02150 0.25 -0.8 483,563 + ABCV34_RS02150 0.45 -3.0 483,563 + ABCV34_RS02150 0.45 +2.5 483,563 + ABCV34_RS02150 0.45 -1.7 483,563 + ABCV34_RS02150 0.45 -1.5 483,563 + ABCV34_RS02150 0.45 -0.2 483,564 - ABCV34_RS02150 0.45 +0.8 483,564 - ABCV34_RS02150 0.45 -0.4 483,564 - ABCV34_RS02150 0.45 -3.6 483,750 + ABCV34_RS02150 0.73 -1.9 483,750 + ABCV34_RS02150 0.73 -3.6 483,750 + ABCV34_RS02150 0.73 -2.4 483,897 + -0.8 483,897 + -0.6 483,898 - -0.7 483,898 - -3.1 483,898 - -2.1 483,898 - -0.3 483,901 + -1.3 483,901 + -0.1 483,901 + -2.0 483,901 + -2.7 483,901 + -0.6 483,901 + -0.1 483,901 + -3.1 483,901 + -2.0 483,901 + -3.4 483,902 - -0.6 483,902 - -1.5 483,902 - -0.3 483,936 + -1.3 483,937 + -2.8 483,937 + -2.1 483,937 + -2.3 483,937 + -0.5 483,937 + -0.8 483,937 + -0.6 483,937 + +0.6 483,937 + -0.6 483,937 + -1.0 483,938 - -2.3 483,938 - -0.8 483,938 - -2.7 483,938 - +0.6 483,938 - +0.1 483,938 - -0.6 483,938 - -0.9 483,938 - -1.1 483,938 - +1.3 483,938 - -0.2 483,938 - +0.2 483,938 - -1.3 483,938 - -3.1 483,938 - -1.7 483,938 - +3.2 483,973 + -0.8 484,395 + ABCV34_RS02155 0.22 -1.2 484,395 + ABCV34_RS02155 0.22 -2.8 484,420 + ABCV34_RS02155 0.24 -3.5 484,420 + ABCV34_RS02155 0.24 +2.5 484,420 + ABCV34_RS02155 0.24 +2.2 484,421 - ABCV34_RS02155 0.24 -0.4 484,421 - ABCV34_RS02155 0.24 -4.0 484,421 - ABCV34_RS02155 0.24 -3.7 484,434 + ABCV34_RS02155 0.25 -0.2 484,434 + ABCV34_RS02155 0.25 -3.5 484,434 + ABCV34_RS02155 0.25 -1.5 484,434 + ABCV34_RS02155 0.25 -1.0 484,434 + ABCV34_RS02155 0.25 +2.1 484,435 - ABCV34_RS02155 0.25 -2.2 484,435 - ABCV34_RS02155 0.25 -2.9 484,435 - ABCV34_RS02155 0.25 -2.6 484,435 - ABCV34_RS02155 0.25 -0.6 484,435 - ABCV34_RS02155 0.25 -3.5 484,435 - ABCV34_RS02155 0.25 -1.1 484,458 + ABCV34_RS02155 0.26 -2.7 484,458 + ABCV34_RS02155 0.26 -4.6 484,458 + ABCV34_RS02155 0.26 -3.3 484,458 + ABCV34_RS02155 0.26 -0.3 484,459 - ABCV34_RS02155 0.26 -1.5 484,459 - ABCV34_RS02155 0.26 -3.6 484,807 + ABCV34_RS02155 0.51 -1.7 484,808 - ABCV34_RS02155 0.51 -2.0 484,808 - ABCV34_RS02155 0.51 -3.0 484,808 - ABCV34_RS02155 0.51 -1.2 484,885 + ABCV34_RS02155 0.56 -1.0 484,885 + ABCV34_RS02155 0.56 -1.3
Or see this region's nucleotide sequence