Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01510

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01505 and ABCV34_RS01510 are separated by 115 nucleotidesABCV34_RS01510 and ABCV34_RS01515 overlap by 1 nucleotides ABCV34_RS01505: ABCV34_RS01505 - GntR family transcriptional regulator, at 320,546 to 321,217 _RS01505 ABCV34_RS01510: ABCV34_RS01510 - 5-oxoprolinase subunit PxpA, at 321,333 to 322,097 _RS01510 ABCV34_RS01515: ABCV34_RS01515 - urea amidolyase family protein, at 322,097 to 323,758 _RS01515 Position (kb) 321 322 323Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 320.377 kb on + strandat 320.378 kb on - strandat 320.378 kb on - strandat 320.418 kb on + strandat 320.418 kb on + strandat 320.441 kb on + strandat 320.441 kb on + strandat 320.442 kb on - strandat 320.442 kb on - strandat 320.449 kb on + strandat 320.449 kb on + strandat 320.463 kb on + strandat 320.467 kb on + strandat 320.468 kb on - strandat 320.468 kb on - strandat 320.524 kb on + strandat 320.525 kb on - strandat 320.525 kb on - strandat 320.525 kb on - strandat 320.565 kb on + strandat 320.565 kb on + strandat 320.566 kb on - strandat 320.566 kb on - strandat 320.566 kb on - strandat 320.566 kb on - strandat 320.566 kb on - strandat 320.566 kb on - strandat 320.596 kb on + strandat 320.602 kb on - strandat 320.632 kb on + strand, within ABCV34_RS01505at 320.648 kb on + strand, within ABCV34_RS01505at 320.648 kb on + strand, within ABCV34_RS01505at 320.648 kb on + strand, within ABCV34_RS01505at 320.649 kb on - strand, within ABCV34_RS01505at 320.649 kb on - strand, within ABCV34_RS01505at 320.649 kb on - strand, within ABCV34_RS01505at 320.649 kb on - strand, within ABCV34_RS01505at 320.649 kb on - strand, within ABCV34_RS01505at 320.694 kb on + strand, within ABCV34_RS01505at 320.695 kb on - strand, within ABCV34_RS01505at 320.952 kb on + strand, within ABCV34_RS01505at 321.202 kb on - strandat 321.322 kb on - strandat 321.467 kb on + strand, within ABCV34_RS01510at 321.467 kb on + strand, within ABCV34_RS01510at 321.468 kb on - strand, within ABCV34_RS01510at 321.468 kb on - strand, within ABCV34_RS01510at 321.591 kb on + strand, within ABCV34_RS01510at 321.591 kb on + strand, within ABCV34_RS01510at 321.591 kb on + strand, within ABCV34_RS01510at 321.591 kb on + strand, within ABCV34_RS01510at 321.592 kb on - strand, within ABCV34_RS01510at 321.592 kb on - strand, within ABCV34_RS01510at 321.645 kb on + strand, within ABCV34_RS01510at 321.669 kb on + strand, within ABCV34_RS01510at 321.669 kb on + strand, within ABCV34_RS01510at 321.669 kb on + strand, within ABCV34_RS01510at 321.669 kb on + strand, within ABCV34_RS01510at 321.669 kb on + strand, within ABCV34_RS01510at 321.670 kb on - strand, within ABCV34_RS01510at 321.670 kb on - strand, within ABCV34_RS01510at 321.670 kb on - strand, within ABCV34_RS01510at 321.834 kb on + strand, within ABCV34_RS01510at 321.834 kb on + strand, within ABCV34_RS01510at 321.834 kb on + strand, within ABCV34_RS01510at 321.834 kb on + strand, within ABCV34_RS01510at 321.834 kb on + strand, within ABCV34_RS01510at 321.834 kb on + strand, within ABCV34_RS01510at 321.834 kb on + strand, within ABCV34_RS01510at 321.835 kb on - strand, within ABCV34_RS01510at 321.835 kb on - strand, within ABCV34_RS01510at 321.835 kb on - strand, within ABCV34_RS01510at 321.835 kb on - strand, within ABCV34_RS01510at 321.835 kb on - strand, within ABCV34_RS01510at 321.836 kb on + strand, within ABCV34_RS01510at 321.837 kb on - strand, within ABCV34_RS01510at 322.019 kb on + strand, within ABCV34_RS01510at 322.397 kb on + strand, within ABCV34_RS01515at 322.397 kb on + strand, within ABCV34_RS01515at 322.397 kb on + strand, within ABCV34_RS01515at 322.397 kb on + strand, within ABCV34_RS01515at 322.397 kb on + strand, within ABCV34_RS01515at 322.398 kb on - strand, within ABCV34_RS01515at 322.398 kb on - strand, within ABCV34_RS01515at 322.398 kb on - strand, within ABCV34_RS01515at 322.398 kb on - strand, within ABCV34_RS01515at 322.554 kb on + strand, within ABCV34_RS01515

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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320,377 + -1.7
320,378 - +2.4
320,378 - -2.9
320,418 + -1.9
320,418 + +0.5
320,441 + -1.5
320,441 + -1.2
320,442 - +0.3
320,442 - -2.0
320,449 + -2.9
320,449 + -0.5
320,463 + -1.3
320,467 + -1.2
320,468 - -1.2
320,468 - -2.5
320,524 + -1.7
320,525 - +3.0
320,525 - +0.4
320,525 - -1.8
320,565 + -1.2
320,565 + -2.6
320,566 - -0.0
320,566 - -1.8
320,566 - -3.6
320,566 - -0.0
320,566 - -1.3
320,566 - -0.1
320,596 + -2.7
320,602 - -0.8
320,632 + ABCV34_RS01505 0.13 -2.5
320,648 + ABCV34_RS01505 0.15 -2.0
320,648 + ABCV34_RS01505 0.15 +0.4
320,648 + ABCV34_RS01505 0.15 -0.3
320,649 - ABCV34_RS01505 0.15 +0.8
320,649 - ABCV34_RS01505 0.15 +0.7
320,649 - ABCV34_RS01505 0.15 -3.6
320,649 - ABCV34_RS01505 0.15 -2.0
320,649 - ABCV34_RS01505 0.15 -3.5
320,694 + ABCV34_RS01505 0.22 -0.3
320,695 - ABCV34_RS01505 0.22 +1.2
320,952 + ABCV34_RS01505 0.60 -1.3
321,202 - -3.9
321,322 - -0.3
321,467 + ABCV34_RS01510 0.18 +1.5
321,467 + ABCV34_RS01510 0.18 -1.0
321,468 - ABCV34_RS01510 0.18 -2.5
321,468 - ABCV34_RS01510 0.18 -2.8
321,591 + ABCV34_RS01510 0.34 -0.5
321,591 + ABCV34_RS01510 0.34 -2.7
321,591 + ABCV34_RS01510 0.34 -3.7
321,591 + ABCV34_RS01510 0.34 -1.9
321,592 - ABCV34_RS01510 0.34 +0.4
321,592 - ABCV34_RS01510 0.34 +0.3
321,645 + ABCV34_RS01510 0.41 -2.0
321,669 + ABCV34_RS01510 0.44 +1.0
321,669 + ABCV34_RS01510 0.44 -2.3
321,669 + ABCV34_RS01510 0.44 -0.4
321,669 + ABCV34_RS01510 0.44 +0.4
321,669 + ABCV34_RS01510 0.44 +1.7
321,670 - ABCV34_RS01510 0.44 -3.0
321,670 - ABCV34_RS01510 0.44 -2.2
321,670 - ABCV34_RS01510 0.44 +0.1
321,834 + ABCV34_RS01510 0.65 -2.7
321,834 + ABCV34_RS01510 0.65 -0.4
321,834 + ABCV34_RS01510 0.65 +0.6
321,834 + ABCV34_RS01510 0.65 -2.9
321,834 + ABCV34_RS01510 0.65 +4.2
321,834 + ABCV34_RS01510 0.65 -2.2
321,834 + ABCV34_RS01510 0.65 -2.9
321,835 - ABCV34_RS01510 0.66 -1.8
321,835 - ABCV34_RS01510 0.66 +0.4
321,835 - ABCV34_RS01510 0.66 +2.0
321,835 - ABCV34_RS01510 0.66 -1.3
321,835 - ABCV34_RS01510 0.66 -2.4
321,836 + ABCV34_RS01510 0.66 -3.1
321,837 - ABCV34_RS01510 0.66 +1.2
322,019 + ABCV34_RS01510 0.90 +0.3
322,397 + ABCV34_RS01515 0.18 -1.1
322,397 + ABCV34_RS01515 0.18 +2.6
322,397 + ABCV34_RS01515 0.18 +2.0
322,397 + ABCV34_RS01515 0.18 -0.6
322,397 + ABCV34_RS01515 0.18 -0.9
322,398 - ABCV34_RS01515 0.18 -0.3
322,398 - ABCV34_RS01515 0.18 +1.8
322,398 - ABCV34_RS01515 0.18 -1.2
322,398 - ABCV34_RS01515 0.18 +1.6
322,554 + ABCV34_RS01515 0.27 -0.5

Or see this region's nucleotide sequence