Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS00580

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS00570 and ABCV34_RS00575 are separated by 22 nucleotidesABCV34_RS00575 and ABCV34_RS00580 overlap by 4 nucleotidesABCV34_RS00580 and ABCV34_RS00585 overlap by 4 nucleotides ABCV34_RS00570: ABCV34_RS00570 - L-threonylcarbamoyladenylate synthase, at 122,096 to 123,208 _RS00570 ABCV34_RS00575: ABCV34_RS00575 - ABC transporter ATP-binding protein, at 123,231 to 123,941 _RS00575 ABCV34_RS00580: ABCV34_RS00580 - ABC transporter ATP-binding protein, at 123,938 to 124,693 _RS00580 ABCV34_RS00585: ABCV34_RS00585 - branched-chain amino acid ABC transporter permease, at 124,690 to 125,598 _RS00585 Position (kb) 123 124 125Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 123.206 kb on + strandat 123.355 kb on + strand, within ABCV34_RS00575at 123.576 kb on + strand, within ABCV34_RS00575at 123.577 kb on - strand, within ABCV34_RS00575at 123.577 kb on - strand, within ABCV34_RS00575at 123.655 kb on - strand, within ABCV34_RS00575at 123.694 kb on + strand, within ABCV34_RS00575at 123.694 kb on + strand, within ABCV34_RS00575at 123.695 kb on - strand, within ABCV34_RS00575at 123.695 kb on - strand, within ABCV34_RS00575at 123.695 kb on - strand, within ABCV34_RS00575at 123.695 kb on - strand, within ABCV34_RS00575at 123.695 kb on - strand, within ABCV34_RS00575at 123.695 kb on - strand, within ABCV34_RS00575at 123.901 kb on + strandat 123.901 kb on + strandat 123.901 kb on + strandat 123.901 kb on + strandat 123.901 kb on + strandat 123.902 kb on - strandat 123.902 kb on - strandat 123.902 kb on - strandat 123.902 kb on - strandat 123.960 kb on + strandat 123.960 kb on + strandat 123.960 kb on + strandat 123.960 kb on + strandat 123.960 kb on + strandat 123.960 kb on + strandat 123.960 kb on + strandat 123.960 kb on + strandat 123.961 kb on - strandat 123.961 kb on - strandat 123.961 kb on - strandat 123.961 kb on - strandat 123.980 kb on - strandat 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.418 kb on + strand, within ABCV34_RS00580at 124.419 kb on - strand, within ABCV34_RS00580at 124.419 kb on - strand, within ABCV34_RS00580at 124.419 kb on - strand, within ABCV34_RS00580at 124.419 kb on - strand, within ABCV34_RS00580at 124.419 kb on - strand, within ABCV34_RS00580at 124.419 kb on - strand, within ABCV34_RS00580at 124.419 kb on - strand, within ABCV34_RS00580at 124.434 kb on + strand, within ABCV34_RS00580at 124.434 kb on + strand, within ABCV34_RS00580at 124.434 kb on + strand, within ABCV34_RS00580at 124.435 kb on - strand, within ABCV34_RS00580at 124.435 kb on - strand, within ABCV34_RS00580at 124.706 kb on + strandat 124.706 kb on + strandat 124.706 kb on + strandat 124.706 kb on + strandat 124.706 kb on + strandat 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 124.921 kb on + strand, within ABCV34_RS00585at 124.921 kb on + strand, within ABCV34_RS00585at 124.922 kb on - strand, within ABCV34_RS00585at 124.957 kb on + strand, within ABCV34_RS00585at 124.957 kb on + strand, within ABCV34_RS00585at 124.957 kb on + strand, within ABCV34_RS00585at 124.957 kb on + strand, within ABCV34_RS00585at 124.957 kb on + strand, within ABCV34_RS00585at 124.957 kb on + strand, within ABCV34_RS00585at 124.958 kb on - strand, within ABCV34_RS00585at 124.958 kb on - strand, within ABCV34_RS00585at 125.060 kb on + strand, within ABCV34_RS00585at 125.060 kb on + strand, within ABCV34_RS00585at 125.060 kb on + strand, within ABCV34_RS00585at 125.060 kb on + strand, within ABCV34_RS00585at 125.060 kb on + strand, within ABCV34_RS00585at 125.061 kb on - strand, within ABCV34_RS00585at 125.075 kb on + strand, within ABCV34_RS00585at 125.076 kb on - strand, within ABCV34_RS00585at 125.213 kb on + strand, within ABCV34_RS00585at 125.213 kb on + strand, within ABCV34_RS00585at 125.213 kb on + strand, within ABCV34_RS00585at 125.213 kb on + strand, within ABCV34_RS00585at 125.213 kb on + strand, within ABCV34_RS00585at 125.213 kb on + strand, within ABCV34_RS00585at 125.213 kb on + strand, within ABCV34_RS00585at 125.214 kb on - strand, within ABCV34_RS00585at 125.214 kb on - strand, within ABCV34_RS00585at 125.214 kb on - strand, within ABCV34_RS00585at 125.214 kb on - strand, within ABCV34_RS00585at 125.279 kb on + strand, within ABCV34_RS00585at 125.279 kb on + strand, within ABCV34_RS00585at 125.279 kb on + strand, within ABCV34_RS00585at 125.280 kb on - strand, within ABCV34_RS00585at 125.280 kb on - strand, within ABCV34_RS00585at 125.280 kb on - strand, within ABCV34_RS00585at 125.280 kb on - strand, within ABCV34_RS00585at 125.280 kb on - strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.285 kb on + strand, within ABCV34_RS00585at 125.286 kb on - strand, within ABCV34_RS00585at 125.286 kb on - strand, within ABCV34_RS00585at 125.286 kb on - strand, within ABCV34_RS00585at 125.286 kb on - strand, within ABCV34_RS00585at 125.286 kb on - strand, within ABCV34_RS00585at 125.286 kb on - strand, within ABCV34_RS00585at 125.286 kb on - strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.330 kb on + strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.331 kb on - strand, within ABCV34_RS00585at 125.333 kb on + strand, within ABCV34_RS00585at 125.334 kb on - strand, within ABCV34_RS00585at 125.334 kb on - strand, within ABCV34_RS00585at 125.334 kb on - strand, within ABCV34_RS00585at 125.334 kb on - strand, within ABCV34_RS00585at 125.334 kb on - strand, within ABCV34_RS00585at 125.372 kb on + strand, within ABCV34_RS00585at 125.372 kb on + strand, within ABCV34_RS00585at 125.372 kb on + strand, within ABCV34_RS00585at 125.372 kb on + strand, within ABCV34_RS00585at 125.372 kb on + strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.373 kb on - strand, within ABCV34_RS00585at 125.417 kb on + strand, within ABCV34_RS00585at 125.417 kb on + strand, within ABCV34_RS00585at 125.418 kb on - strand, within ABCV34_RS00585at 125.418 kb on - strand, within ABCV34_RS00585at 125.502 kb on - strand, within ABCV34_RS00585at 125.502 kb on - strand, within ABCV34_RS00585at 125.502 kb on - strand, within ABCV34_RS00585at 125.502 kb on - strand, within ABCV34_RS00585at 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.591 kb on + strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.592 kb on - strandat 125.622 kb on - strandat 125.622 kb on - strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.625 kb on - strandat 125.625 kb on - strandat 125.625 kb on - strandat 125.625 kb on - strandat 125.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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123,206 + +0.3
123,355 + ABCV34_RS00575 0.17 -0.6
123,576 + ABCV34_RS00575 0.49 -0.5
123,577 - ABCV34_RS00575 0.49 -3.2
123,577 - ABCV34_RS00575 0.49 -2.1
123,655 - ABCV34_RS00575 0.60 -2.0
123,694 + ABCV34_RS00575 0.65 -1.8
123,694 + ABCV34_RS00575 0.65 -1.4
123,695 - ABCV34_RS00575 0.65 -3.4
123,695 - ABCV34_RS00575 0.65 -1.4
123,695 - ABCV34_RS00575 0.65 -0.4
123,695 - ABCV34_RS00575 0.65 -5.6
123,695 - ABCV34_RS00575 0.65 -0.5
123,695 - ABCV34_RS00575 0.65 -3.6
123,901 + -2.2
123,901 + -1.7
123,901 + +0.2
123,901 + +1.2
123,901 + -1.4
123,902 - +0.5
123,902 - -1.7
123,902 - -3.7
123,902 - -1.5
123,960 + -0.5
123,960 + +0.6
123,960 + +0.3
123,960 + -2.4
123,960 + -2.6
123,960 + -4.3
123,960 + -1.8
123,960 + -1.2
123,961 - -0.4
123,961 - -0.3
123,961 - -1.8
123,961 - -1.9
123,980 - -4.1
124,418 + ABCV34_RS00580 0.63 +0.4
124,418 + ABCV34_RS00580 0.63 -1.9
124,418 + ABCV34_RS00580 0.63 -1.1
124,418 + ABCV34_RS00580 0.63 -0.8
124,418 + ABCV34_RS00580 0.63 +0.1
124,418 + ABCV34_RS00580 0.63 +0.2
124,418 + ABCV34_RS00580 0.63 -2.9
124,418 + ABCV34_RS00580 0.63 +2.6
124,418 + ABCV34_RS00580 0.63 -2.8
124,419 - ABCV34_RS00580 0.64 -0.6
124,419 - ABCV34_RS00580 0.64 -0.2
124,419 - ABCV34_RS00580 0.64 -0.3
124,419 - ABCV34_RS00580 0.64 -2.3
124,419 - ABCV34_RS00580 0.64 -2.4
124,419 - ABCV34_RS00580 0.64 -0.9
124,419 - ABCV34_RS00580 0.64 -0.7
124,434 + ABCV34_RS00580 0.66 -0.4
124,434 + ABCV34_RS00580 0.66 -1.8
124,434 + ABCV34_RS00580 0.66 -1.0
124,435 - ABCV34_RS00580 0.66 -3.4
124,435 - ABCV34_RS00580 0.66 +0.5
124,706 + +2.4
124,706 + -2.5
124,706 + -1.8
124,706 + +0.1
124,706 + -0.7
124,707 - -1.7
124,707 - -0.1
124,707 - -0.2
124,707 - +1.2
124,707 - -0.4
124,707 - -1.4
124,707 - -1.2
124,707 - -2.2
124,921 + ABCV34_RS00585 0.25 -3.5
124,921 + ABCV34_RS00585 0.25 -2.4
124,922 - ABCV34_RS00585 0.26 +0.2
124,957 + ABCV34_RS00585 0.29 -0.5
124,957 + ABCV34_RS00585 0.29 -4.5
124,957 + ABCV34_RS00585 0.29 -1.7
124,957 + ABCV34_RS00585 0.29 -4.0
124,957 + ABCV34_RS00585 0.29 +2.6
124,957 + ABCV34_RS00585 0.29 -1.6
124,958 - ABCV34_RS00585 0.29 -1.0
124,958 - ABCV34_RS00585 0.29 +0.1
125,060 + ABCV34_RS00585 0.41 -0.1
125,060 + ABCV34_RS00585 0.41 +0.3
125,060 + ABCV34_RS00585 0.41 +1.7
125,060 + ABCV34_RS00585 0.41 -3.1
125,060 + ABCV34_RS00585 0.41 -1.2
125,061 - ABCV34_RS00585 0.41 +0.9
125,075 + ABCV34_RS00585 0.42 +0.5
125,076 - ABCV34_RS00585 0.42 -0.6
125,213 + ABCV34_RS00585 0.58 +0.3
125,213 + ABCV34_RS00585 0.58 +0.1
125,213 + ABCV34_RS00585 0.58 +0.2
125,213 + ABCV34_RS00585 0.58 -1.9
125,213 + ABCV34_RS00585 0.58 -2.6
125,213 + ABCV34_RS00585 0.58 -1.2
125,213 + ABCV34_RS00585 0.58 -0.6
125,214 - ABCV34_RS00585 0.58 +0.4
125,214 - ABCV34_RS00585 0.58 -4.5
125,214 - ABCV34_RS00585 0.58 -1.4
125,214 - ABCV34_RS00585 0.58 -0.6
125,279 + ABCV34_RS00585 0.65 -0.2
125,279 + ABCV34_RS00585 0.65 -2.8
125,279 + ABCV34_RS00585 0.65 +0.3
125,280 - ABCV34_RS00585 0.65 -2.6
125,280 - ABCV34_RS00585 0.65 -1.9
125,280 - ABCV34_RS00585 0.65 -0.4
125,280 - ABCV34_RS00585 0.65 -1.7
125,280 - ABCV34_RS00585 0.65 -2.7
125,285 + ABCV34_RS00585 0.65 -1.4
125,285 + ABCV34_RS00585 0.65 +0.0
125,285 + ABCV34_RS00585 0.65 -1.4
125,285 + ABCV34_RS00585 0.65 -2.6
125,285 + ABCV34_RS00585 0.65 -2.1
125,285 + ABCV34_RS00585 0.65 -0.3
125,285 + ABCV34_RS00585 0.65 -1.7
125,285 + ABCV34_RS00585 0.65 -1.6
125,285 + ABCV34_RS00585 0.65 +1.0
125,285 + ABCV34_RS00585 0.65 -0.4
125,285 + ABCV34_RS00585 0.65 -1.4
125,285 + ABCV34_RS00585 0.65 -0.8
125,285 + ABCV34_RS00585 0.65 -1.4
125,285 + ABCV34_RS00585 0.65 +0.6
125,285 + ABCV34_RS00585 0.65 -2.9
125,285 + ABCV34_RS00585 0.65 -4.1
125,285 + ABCV34_RS00585 0.65 -2.1
125,286 - ABCV34_RS00585 0.66 -0.1
125,286 - ABCV34_RS00585 0.66 +1.4
125,286 - ABCV34_RS00585 0.66 -4.4
125,286 - ABCV34_RS00585 0.66 -0.8
125,286 - ABCV34_RS00585 0.66 -3.5
125,286 - ABCV34_RS00585 0.66 +2.0
125,286 - ABCV34_RS00585 0.66 -2.4
125,330 + ABCV34_RS00585 0.70 +0.9
125,330 + ABCV34_RS00585 0.70 +0.8
125,330 + ABCV34_RS00585 0.70 -1.4
125,330 + ABCV34_RS00585 0.70 -0.0
125,330 + ABCV34_RS00585 0.70 -2.6
125,330 + ABCV34_RS00585 0.70 -2.9
125,330 + ABCV34_RS00585 0.70 -0.6
125,330 + ABCV34_RS00585 0.70 -1.7
125,330 + ABCV34_RS00585 0.70 -0.9
125,330 + ABCV34_RS00585 0.70 -2.3
125,331 - ABCV34_RS00585 0.71 -1.5
125,331 - ABCV34_RS00585 0.71 -1.0
125,331 - ABCV34_RS00585 0.71 +0.7
125,331 - ABCV34_RS00585 0.71 -1.6
125,331 - ABCV34_RS00585 0.71 -1.5
125,331 - ABCV34_RS00585 0.71 -0.3
125,331 - ABCV34_RS00585 0.71 -1.5
125,331 - ABCV34_RS00585 0.71 -2.6
125,331 - ABCV34_RS00585 0.71 +0.8
125,331 - ABCV34_RS00585 0.71 +1.5
125,333 + ABCV34_RS00585 0.71 -1.1
125,334 - ABCV34_RS00585 0.71 -1.5
125,334 - ABCV34_RS00585 0.71 -1.7
125,334 - ABCV34_RS00585 0.71 +1.9
125,334 - ABCV34_RS00585 0.71 -2.4
125,334 - ABCV34_RS00585 0.71 -2.9
125,372 + ABCV34_RS00585 0.75 -1.9
125,372 + ABCV34_RS00585 0.75 +0.3
125,372 + ABCV34_RS00585 0.75 -0.6
125,372 + ABCV34_RS00585 0.75 -0.4
125,372 + ABCV34_RS00585 0.75 -1.4
125,373 - ABCV34_RS00585 0.75 -2.6
125,373 - ABCV34_RS00585 0.75 -0.5
125,373 - ABCV34_RS00585 0.75 -1.6
125,373 - ABCV34_RS00585 0.75 -3.5
125,373 - ABCV34_RS00585 0.75 -0.5
125,373 - ABCV34_RS00585 0.75 +0.3
125,373 - ABCV34_RS00585 0.75 -1.8
125,373 - ABCV34_RS00585 0.75 -1.5
125,373 - ABCV34_RS00585 0.75 -0.4
125,417 + ABCV34_RS00585 0.80 -2.2
125,417 + ABCV34_RS00585 0.80 -1.7
125,418 - ABCV34_RS00585 0.80 -1.9
125,418 - ABCV34_RS00585 0.80 -1.6
125,502 - ABCV34_RS00585 0.89 -2.0
125,502 - ABCV34_RS00585 0.89 -2.8
125,502 - ABCV34_RS00585 0.89 -2.2
125,502 - ABCV34_RS00585 0.89 -1.7
125,591 + -1.4
125,591 + -3.3
125,591 + -2.4
125,591 + -3.2
125,591 + -4.2
125,591 + -1.5
125,591 + +0.3
125,591 + -2.1
125,591 + -1.8
125,591 + +1.2
125,591 + -0.2
125,592 - -2.9
125,592 - -0.5
125,592 - -2.6
125,592 - -2.3
125,592 - -1.4
125,592 - -4.7
125,592 - -2.7
125,592 - -2.5
125,592 - -0.3
125,592 - +0.8
125,622 - -4.3
125,622 - -4.7
125,624 + -1.9
125,624 + -3.1
125,624 + -1.5
125,624 + -1.7
125,624 + -0.7
125,624 + -2.7
125,624 + -1.6
125,624 + -2.0
125,624 + -0.9
125,625 - -0.1
125,625 - +1.0
125,625 - -2.2
125,625 - -1.3
125,635 + -2.1

Or see this region's nucleotide sequence