Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS00535

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS00525 and ABCV34_RS00530 overlap by 4 nucleotidesABCV34_RS00530 and ABCV34_RS00535 are separated by 4 nucleotidesABCV34_RS00535 and ABCV34_RS00540 are separated by 14 nucleotidesABCV34_RS00540 and ABCV34_RS00545 are separated by 44 nucleotides ABCV34_RS00525: ABCV34_RS00525 - molybdate ABC transporter permease subunit, at 114,390 to 115,076 _RS00525 ABCV34_RS00530: ABCV34_RS00530 - ATP-binding cassette domain-containing protein, at 115,073 to 115,846 _RS00530 ABCV34_RS00535: ABCV34_RS00535 - TOBE domain-containing protein, at 115,851 to 116,720 _RS00535 ABCV34_RS00540: ABCV34_RS00540 - hypothetical protein, at 116,735 to 117,622 _RS00540 ABCV34_RS00545: ABCV34_RS00545 - molybdopterin adenylyltransferase, at 117,667 to 118,293 _RS00545 Position (kb) 115 116 117Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 114.896 kb on + strand, within ABCV34_RS00525at 114.897 kb on - strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.933 kb on + strand, within ABCV34_RS00525at 114.934 kb on - strand, within ABCV34_RS00525at 114.934 kb on - strand, within ABCV34_RS00525at 114.934 kb on - strand, within ABCV34_RS00525at 114.972 kb on - strand, within ABCV34_RS00525at 114.972 kb on - strand, within ABCV34_RS00525at 114.972 kb on - strand, within ABCV34_RS00525at 115.319 kb on + strand, within ABCV34_RS00530at 115.319 kb on + strand, within ABCV34_RS00530at 115.320 kb on - strand, within ABCV34_RS00530at 115.320 kb on - strand, within ABCV34_RS00530at 115.320 kb on - strand, within ABCV34_RS00530at 115.320 kb on - strand, within ABCV34_RS00530at 115.334 kb on + strand, within ABCV34_RS00530at 115.334 kb on + strand, within ABCV34_RS00530at 115.334 kb on + strand, within ABCV34_RS00530at 115.334 kb on + strand, within ABCV34_RS00530at 115.334 kb on + strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.335 kb on - strand, within ABCV34_RS00530at 115.350 kb on - strand, within ABCV34_RS00530at 115.350 kb on - strand, within ABCV34_RS00530at 115.354 kb on + strand, within ABCV34_RS00530at 115.354 kb on + strand, within ABCV34_RS00530at 115.354 kb on + strand, within ABCV34_RS00530at 115.354 kb on + strand, within ABCV34_RS00530at 115.354 kb on + strand, within ABCV34_RS00530at 115.355 kb on - strand, within ABCV34_RS00530at 115.765 kb on + strand, within ABCV34_RS00530at 116.413 kb on + strand, within ABCV34_RS00535at 116.414 kb on - strand, within ABCV34_RS00535at 116.545 kb on + strand, within ABCV34_RS00535at 116.545 kb on + strand, within ABCV34_RS00535at 116.546 kb on - strand, within ABCV34_RS00535at 116.546 kb on - strand, within ABCV34_RS00535at 116.546 kb on - strand, within ABCV34_RS00535at 116.546 kb on - strand, within ABCV34_RS00535at 116.546 kb on - strand, within ABCV34_RS00535at 116.546 kb on - strand, within ABCV34_RS00535at 116.919 kb on + strand, within ABCV34_RS00540at 116.919 kb on + strand, within ABCV34_RS00540at 116.920 kb on - strand, within ABCV34_RS00540at 116.920 kb on - strand, within ABCV34_RS00540at 116.961 kb on + strand, within ABCV34_RS00540at 116.961 kb on + strand, within ABCV34_RS00540at 116.961 kb on + strand, within ABCV34_RS00540at 116.961 kb on + strand, within ABCV34_RS00540at 116.961 kb on + strand, within ABCV34_RS00540at 116.962 kb on - strand, within ABCV34_RS00540at 116.962 kb on - strand, within ABCV34_RS00540at 116.962 kb on - strand, within ABCV34_RS00540at 117.114 kb on + strand, within ABCV34_RS00540at 117.297 kb on - strand, within ABCV34_RS00540at 117.348 kb on + strand, within ABCV34_RS00540at 117.349 kb on - strand, within ABCV34_RS00540at 117.360 kb on + strand, within ABCV34_RS00540at 117.361 kb on - strand, within ABCV34_RS00540at 117.361 kb on - strand, within ABCV34_RS00540at 117.361 kb on - strand, within ABCV34_RS00540at 117.361 kb on - strand, within ABCV34_RS00540at 117.361 kb on - strand, within ABCV34_RS00540at 117.396 kb on + strand, within ABCV34_RS00540at 117.396 kb on + strand, within ABCV34_RS00540at 117.396 kb on + strand, within ABCV34_RS00540at 117.396 kb on + strand, within ABCV34_RS00540at 117.396 kb on + strand, within ABCV34_RS00540at 117.396 kb on + strand, within ABCV34_RS00540at 117.396 kb on + strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.397 kb on - strand, within ABCV34_RS00540at 117.616 kb on + strandat 117.627 kb on + strandat 117.627 kb on + strandat 117.627 kb on + strandat 117.627 kb on + strandat 117.627 kb on + strandat 117.628 kb on - strandat 117.628 kb on - strandat 117.628 kb on - strandat 117.639 kb on + strandat 117.640 kb on - strandat 117.640 kb on - strandat 117.640 kb on - strandat 117.653 kb on + strandat 117.653 kb on + strandat 117.653 kb on + strandat 117.654 kb on - strandat 117.654 kb on - strandat 117.661 kb on + strandat 117.661 kb on + strandat 117.661 kb on + strandat 117.661 kb on + strandat 117.661 kb on + strandat 117.662 kb on - strandat 117.662 kb on - strandat 117.662 kb on - strandat 117.662 kb on - strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.667 kb on - strandat 117.667 kb on - strandat 117.667 kb on - strandat 117.667 kb on - strandat 117.667 kb on - strandat 117.675 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
remove
114,896 + ABCV34_RS00525 0.74 -1.4
114,897 - ABCV34_RS00525 0.74 -1.5
114,933 + ABCV34_RS00525 0.79 -1.7
114,933 + ABCV34_RS00525 0.79 +1.2
114,933 + ABCV34_RS00525 0.79 +0.1
114,933 + ABCV34_RS00525 0.79 -1.0
114,933 + ABCV34_RS00525 0.79 -3.6
114,933 + ABCV34_RS00525 0.79 -2.0
114,933 + ABCV34_RS00525 0.79 -1.3
114,933 + ABCV34_RS00525 0.79 -0.9
114,933 + ABCV34_RS00525 0.79 -0.2
114,933 + ABCV34_RS00525 0.79 +2.0
114,933 + ABCV34_RS00525 0.79 -0.7
114,934 - ABCV34_RS00525 0.79 -0.4
114,934 - ABCV34_RS00525 0.79 +2.0
114,934 - ABCV34_RS00525 0.79 -1.7
114,972 - ABCV34_RS00525 0.85 -2.6
114,972 - ABCV34_RS00525 0.85 -2.3
114,972 - ABCV34_RS00525 0.85 -1.4
115,319 + ABCV34_RS00530 0.32 -2.7
115,319 + ABCV34_RS00530 0.32 -2.7
115,320 - ABCV34_RS00530 0.32 -1.4
115,320 - ABCV34_RS00530 0.32 -1.6
115,320 - ABCV34_RS00530 0.32 -3.2
115,320 - ABCV34_RS00530 0.32 +2.2
115,334 + ABCV34_RS00530 0.34 +1.5
115,334 + ABCV34_RS00530 0.34 -1.4
115,334 + ABCV34_RS00530 0.34 -2.5
115,334 + ABCV34_RS00530 0.34 -3.9
115,334 + ABCV34_RS00530 0.34 +2.6
115,335 - ABCV34_RS00530 0.34 -3.3
115,335 - ABCV34_RS00530 0.34 +3.0
115,335 - ABCV34_RS00530 0.34 -1.6
115,335 - ABCV34_RS00530 0.34 +0.1
115,335 - ABCV34_RS00530 0.34 -0.1
115,335 - ABCV34_RS00530 0.34 +0.3
115,335 - ABCV34_RS00530 0.34 -3.0
115,335 - ABCV34_RS00530 0.34 -2.0
115,335 - ABCV34_RS00530 0.34 -2.8
115,335 - ABCV34_RS00530 0.34 -2.0
115,335 - ABCV34_RS00530 0.34 -0.5
115,335 - ABCV34_RS00530 0.34 -1.7
115,350 - ABCV34_RS00530 0.36 +0.9
115,350 - ABCV34_RS00530 0.36 -1.9
115,354 + ABCV34_RS00530 0.36 -1.6
115,354 + ABCV34_RS00530 0.36 +1.0
115,354 + ABCV34_RS00530 0.36 +0.3
115,354 + ABCV34_RS00530 0.36 +0.5
115,354 + ABCV34_RS00530 0.36 +0.4
115,355 - ABCV34_RS00530 0.36 +0.5
115,765 + ABCV34_RS00530 0.89 -0.3
116,413 + ABCV34_RS00535 0.65 -2.0
116,414 - ABCV34_RS00535 0.65 -1.7
116,545 + ABCV34_RS00535 0.80 +0.7
116,545 + ABCV34_RS00535 0.80 +0.2
116,546 - ABCV34_RS00535 0.80 -1.6
116,546 - ABCV34_RS00535 0.80 -2.7
116,546 - ABCV34_RS00535 0.80 +2.0
116,546 - ABCV34_RS00535 0.80 -0.1
116,546 - ABCV34_RS00535 0.80 +1.8
116,546 - ABCV34_RS00535 0.80 -2.2
116,919 + ABCV34_RS00540 0.21 +0.4
116,919 + ABCV34_RS00540 0.21 -1.1
116,920 - ABCV34_RS00540 0.21 -2.7
116,920 - ABCV34_RS00540 0.21 +0.3
116,961 + ABCV34_RS00540 0.25 -4.3
116,961 + ABCV34_RS00540 0.25 -0.7
116,961 + ABCV34_RS00540 0.25 -3.1
116,961 + ABCV34_RS00540 0.25 -1.4
116,961 + ABCV34_RS00540 0.25 +3.7
116,962 - ABCV34_RS00540 0.26 -0.3
116,962 - ABCV34_RS00540 0.26 -2.2
116,962 - ABCV34_RS00540 0.26 -2.8
117,114 + ABCV34_RS00540 0.43 +0.1
117,297 - ABCV34_RS00540 0.63 +1.5
117,348 + ABCV34_RS00540 0.69 +1.0
117,349 - ABCV34_RS00540 0.69 -2.4
117,360 + ABCV34_RS00540 0.70 +0.3
117,361 - ABCV34_RS00540 0.70 -1.9
117,361 - ABCV34_RS00540 0.70 -0.4
117,361 - ABCV34_RS00540 0.70 -1.2
117,361 - ABCV34_RS00540 0.70 -0.5
117,361 - ABCV34_RS00540 0.70 -0.1
117,396 + ABCV34_RS00540 0.74 -2.1
117,396 + ABCV34_RS00540 0.74 +0.2
117,396 + ABCV34_RS00540 0.74 -1.8
117,396 + ABCV34_RS00540 0.74 -2.9
117,396 + ABCV34_RS00540 0.74 -0.3
117,396 + ABCV34_RS00540 0.74 -2.0
117,396 + ABCV34_RS00540 0.74 -0.6
117,397 - ABCV34_RS00540 0.75 -1.0
117,397 - ABCV34_RS00540 0.75 +0.4
117,397 - ABCV34_RS00540 0.75 -0.8
117,397 - ABCV34_RS00540 0.75 -1.1
117,397 - ABCV34_RS00540 0.75 -1.8
117,397 - ABCV34_RS00540 0.75 -1.0
117,397 - ABCV34_RS00540 0.75 -2.0
117,397 - ABCV34_RS00540 0.75 -1.9
117,397 - ABCV34_RS00540 0.75 -4.3
117,397 - ABCV34_RS00540 0.75 -0.6
117,397 - ABCV34_RS00540 0.75 -2.4
117,397 - ABCV34_RS00540 0.75 -0.6
117,397 - ABCV34_RS00540 0.75 +0.9
117,616 + -3.6
117,627 + +1.0
117,627 + -2.8
117,627 + -0.3
117,627 + -4.6
117,627 + +0.7
117,628 - -5.3
117,628 - -2.7
117,628 - -2.9
117,639 + +1.1
117,640 - -3.1
117,640 - +0.8
117,640 - -1.7
117,653 + -1.0
117,653 + -0.8
117,653 + -3.2
117,654 - -1.7
117,654 - -3.6
117,661 + -2.5
117,661 + -2.4
117,661 + +1.2
117,661 + -0.6
117,661 + +1.7
117,662 - -2.6
117,662 - -1.5
117,662 - -1.7
117,662 - -1.4
117,666 + -1.2
117,666 + -0.0
117,666 + -1.4
117,666 + -1.1
117,666 + -0.4
117,666 + -2.2
117,666 + -2.9
117,666 + -2.8
117,666 + +2.1
117,666 + -2.2
117,667 - -1.5
117,667 - -0.1
117,667 - -3.3
117,667 - -0.1
117,667 - -3.9
117,675 + -2.0

Or see this region's nucleotide sequence