Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS00190

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
31,547	+				-1.7
31,589	+				-3.2
31,589	+				-1.7
31,590	-				-2.7
31,592	-				-1.9
31,651	+		ABCV34_RS00185	0.13	+1.1
31,652	-		ABCV34_RS00185	0.13	+2.3
31,668	+		ABCV34_RS00185	0.15	-0.1
31,669	-		ABCV34_RS00185	0.15	+0.4
31,669	-		ABCV34_RS00185	0.15	+0.2
31,669	-		ABCV34_RS00185	0.15	-1.8
31,669	-		ABCV34_RS00185	0.15	-1.2
31,669	-		ABCV34_RS00185	0.15	-0.4
31,669	-		ABCV34_RS00185	0.15	-0.6
31,785	+		ABCV34_RS00185	0.32	-2.3
31,785	+		ABCV34_RS00185	0.32	-1.7
31,785	+		ABCV34_RS00185	0.32	-0.7
31,785	+		ABCV34_RS00185	0.32	-1.3
31,785	+		ABCV34_RS00185	0.32	-4.2
31,785	+		ABCV34_RS00185	0.32	-4.5
31,785	+		ABCV34_RS00185	0.32	-2.8
31,785	+		ABCV34_RS00185	0.32	-1.6
31,785	+		ABCV34_RS00185	0.32	-0.1
31,785	+		ABCV34_RS00185	0.32	+0.8
31,785	+		ABCV34_RS00185	0.32	-2.8
31,785	+		ABCV34_RS00185	0.32	-1.6
31,785	+		ABCV34_RS00185	0.32	-0.8
31,786	-		ABCV34_RS00185	0.32	-2.6
31,786	-		ABCV34_RS00185	0.32	-1.6
31,786	-		ABCV34_RS00185	0.32	-1.7
31,786	-		ABCV34_RS00185	0.32	+0.4
31,786	-		ABCV34_RS00185	0.32	-4.1
31,786	-		ABCV34_RS00185	0.32	-0.0
31,832	+		ABCV34_RS00185	0.38	-1.1
31,832	+		ABCV34_RS00185	0.38	-2.7
31,832	+		ABCV34_RS00185	0.38	-3.7
31,832	+		ABCV34_RS00185	0.38	-3.5
31,832	+		ABCV34_RS00185	0.38	+0.2
31,832	+		ABCV34_RS00185	0.38	-1.0
31,832	+		ABCV34_RS00185	0.38	-0.6
31,832	+		ABCV34_RS00185	0.38	-0.3
31,833	-		ABCV34_RS00185	0.38	+0.5
31,833	-		ABCV34_RS00185	0.38	+1.4
31,833	-		ABCV34_RS00185	0.38	-0.6
31,940	+		ABCV34_RS00185	0.54	-0.1
31,940	+		ABCV34_RS00185	0.54	+2.7
31,941	-		ABCV34_RS00185	0.54	-0.0
31,946	+		ABCV34_RS00185	0.54	-2.8
31,946	+		ABCV34_RS00185	0.54	+1.4
31,946	+		ABCV34_RS00185	0.54	-0.6
31,947	-		ABCV34_RS00185	0.55	-2.0
31,947	-		ABCV34_RS00185	0.55	-3.5
31,947	-		ABCV34_RS00185	0.55	-1.3
31,947	-		ABCV34_RS00185	0.55	-0.8
31,947	-		ABCV34_RS00185	0.55	-3.8
31,947	-		ABCV34_RS00185	0.55	-4.5
32,099	+		ABCV34_RS00185	0.76	-0.4
32,099	+		ABCV34_RS00185	0.76	+0.6
32,099	+		ABCV34_RS00185	0.76	-2.0
32,099	+		ABCV34_RS00185	0.76	-2.0
32,100	-		ABCV34_RS00185	0.76	+0.2
32,100	-		ABCV34_RS00185	0.76	-1.4
32,204	-				-2.7
32,207	+				-4.2
32,207	+				+2.7
32,207	+				-2.1
32,208	-				-3.1
32,208	-				-2.2
32,208	-				-1.0
32,208	-				-1.4
32,208	-				-2.4
32,284	+				-1.2
32,284	+				+0.0
32,284	+				-3.7
32,285	-				-4.4
32,285	-				-4.7
32,285	-				-1.2
32,285	-				-2.2
32,285	-				+1.7
32,288	+				-0.1
32,288	+				-1.7
32,288	+				-1.2
32,288	+				-0.6
32,288	+				-4.0
32,289	-				-5.4
32,289	-				-2.4
32,289	-				-1.5
32,289	-				-1.4
32,289	-				-0.5
32,289	-				-0.1
32,289	-				-2.1
32,289	-				-3.9
32,289	-				+1.4
32,289	-				-1.8
32,426	+		ABCV34_RS00190	0.16	-1.4
32,426	+		ABCV34_RS00190	0.16	-0.2
32,426	+		ABCV34_RS00190	0.16	+1.0
32,426	+		ABCV34_RS00190	0.16	+0.2
32,427	-		ABCV34_RS00190	0.16	-0.3
32,427	-		ABCV34_RS00190	0.16	+0.5
32,575	+		ABCV34_RS00190	0.31	-1.4
32,575	+		ABCV34_RS00190	0.31	-0.3
32,575	+		ABCV34_RS00190	0.31	-0.2
32,575	+		ABCV34_RS00190	0.31	-3.6
32,575	+		ABCV34_RS00190	0.31	-0.1
32,576	-		ABCV34_RS00190	0.31	+0.8
32,576	-		ABCV34_RS00190	0.31	-0.9
32,620	+		ABCV34_RS00190	0.35	-1.6
32,620	+		ABCV34_RS00190	0.35	+1.3
32,621	-		ABCV34_RS00190	0.35	-1.4
32,629	+		ABCV34_RS00190	0.36	-2.1
32,629	+		ABCV34_RS00190	0.36	-4.0
32,629	+		ABCV34_RS00190	0.36	-2.3
32,629	+		ABCV34_RS00190	0.36	+0.4
32,630	-		ABCV34_RS00190	0.36	-0.8
32,630	-		ABCV34_RS00190	0.36	-0.0
32,630	-		ABCV34_RS00190	0.36	-3.4
32,630	-		ABCV34_RS00190	0.36	-1.0
32,630	-		ABCV34_RS00190	0.36	-2.2
32,630	-		ABCV34_RS00190	0.36	-4.0
32,630	-		ABCV34_RS00190	0.36	+1.1
32,830	+		ABCV34_RS00190	0.56	-1.4
32,830	+		ABCV34_RS00190	0.56	-0.3
32,830	+		ABCV34_RS00190	0.56	-1.8
32,831	-		ABCV34_RS00190	0.56	-1.8
32,831	-		ABCV34_RS00190	0.56	-3.2
32,831	-		ABCV34_RS00190	0.56	-0.3
32,831	-		ABCV34_RS00190	0.56	-1.3
32,831	-		ABCV34_RS00190	0.56	-0.5
32,940	-		ABCV34_RS00190	0.67	-2.3
32,963	+		ABCV34_RS00190	0.69	+2.0
33,055	+		ABCV34_RS00190	0.78	-1.8
33,055	+		ABCV34_RS00190	0.78	-2.5
33,055	+		ABCV34_RS00190	0.78	-0.8
33,055	+		ABCV34_RS00190	0.78	+1.5
33,055	+		ABCV34_RS00190	0.78	-0.6
33,055	+		ABCV34_RS00190	0.78	-0.6
33,055	+		ABCV34_RS00190	0.78	+0.7
33,055	+		ABCV34_RS00190	0.78	-0.2
33,055	+		ABCV34_RS00190	0.78	+1.2
33,055	+		ABCV34_RS00190	0.78	-1.9
33,055	+		ABCV34_RS00190	0.78	-1.1
33,055	+		ABCV34_RS00190	0.78	-4.0
33,055	+		ABCV34_RS00190	0.78	-1.8
33,055	+		ABCV34_RS00190	0.78	+0.5
33,055	+		ABCV34_RS00190	0.78	-1.8
33,056	-		ABCV34_RS00190	0.78	-0.6
33,056	-		ABCV34_RS00190	0.78	-1.4
33,056	-		ABCV34_RS00190	0.78	-1.6
33,056	-		ABCV34_RS00190	0.78	-0.8
33,056	-		ABCV34_RS00190	0.78	-2.7
33,056	-		ABCV34_RS00190	0.78	+1.6
33,056	-		ABCV34_RS00190	0.78	-0.1
33,056	-		ABCV34_RS00190	0.78	+0.0
33,056	-		ABCV34_RS00190	0.78	+3.0
33,056	-		ABCV34_RS00190	0.78	-1.5
33,056	-		ABCV34_RS00190	0.78	-3.2
33,056	-		ABCV34_RS00190	0.78	-3.8
33,056	-		ABCV34_RS00190	0.78	-1.5
33,056	-		ABCV34_RS00190	0.78	-2.8
33,056	-		ABCV34_RS00190	0.78	-1.5
33,056	-		ABCV34_RS00190	0.78	+0.5
33,057	+		ABCV34_RS00190	0.78	-0.7
33,142	+		ABCV34_RS00190	0.87	-0.7
33,142	+		ABCV34_RS00190	0.87	+1.3
33,142	+		ABCV34_RS00190	0.87	+0.1
33,142	+		ABCV34_RS00190	0.87	-0.6
33,143	-		ABCV34_RS00190	0.87	-1.7
33,160	+		ABCV34_RS00190	0.88	-2.7
33,161	-		ABCV34_RS00190	0.89	+1.1
33,161	-		ABCV34_RS00190	0.89	+1.6
33,161	-		ABCV34_RS00190	0.89	-1.4
33,161	-		ABCV34_RS00190	0.89	-3.4
33,161	-		ABCV34_RS00190	0.89	-3.8
33,163	+		ABCV34_RS00190	0.89	-2.9
33,163	+		ABCV34_RS00190	0.89	-1.4
33,163	+		ABCV34_RS00190	0.89	-1.7
33,164	-		ABCV34_RS00190	0.89	-1.8
33,164	-		ABCV34_RS00190	0.89	-0.6
33,164	-		ABCV34_RS00190	0.89	-1.5
33,164	-		ABCV34_RS00190	0.89	-3.8
33,164	-		ABCV34_RS00190	0.89	-2.5
33,164	-		ABCV34_RS00190	0.89	-0.8
33,164	-		ABCV34_RS00190	0.89	-2.0
33,164	-		ABCV34_RS00190	0.89	-0.0
33,180	-				-0.9
33,197	+				-1.2
33,197	+				+0.2
33,197	+				-1.4
33,197	+				+0.8
33,446	+		ABCV34_RS00195	0.13	-0.6
33,446	+		ABCV34_RS00195	0.13	-2.0
33,447	-		ABCV34_RS00195	0.13	-1.4
33,447	-		ABCV34_RS00195	0.13	-1.8
33,447	-		ABCV34_RS00195	0.13	-0.6
33,501	+		ABCV34_RS00195	0.17	-2.6
33,501	+		ABCV34_RS00195	0.17	-3.7
33,501	+		ABCV34_RS00195	0.17	-0.8
33,501	+		ABCV34_RS00195	0.17	-3.3
33,501	+		ABCV34_RS00195	0.17	+2.0
33,501	+		ABCV34_RS00195	0.17	-2.7
33,501	+		ABCV34_RS00195	0.17	-3.8
33,501	+		ABCV34_RS00195	0.17	-3.7
33,502	-		ABCV34_RS00195	0.17	-2.1
33,502	-		ABCV34_RS00195	0.17	-1.0
33,502	-		ABCV34_RS00195	0.17	-0.5
33,502	-		ABCV34_RS00195	0.17	-2.7
33,502	-		ABCV34_RS00195	0.17	-3.0
33,502	-		ABCV34_RS00195	0.17	+0.3
33,502	-		ABCV34_RS00195	0.17	-1.6
33,502	-		ABCV34_RS00195	0.17	-2.3
33,502	-		ABCV34_RS00195	0.17	+0.1
33,502	-		ABCV34_RS00195	0.17	+1.0
33,555	+		ABCV34_RS00195	0.21	-0.7
33,663	+		ABCV34_RS00195	0.29	-1.0
33,670	-		ABCV34_RS00195	0.30	-4.1
33,785	+		ABCV34_RS00195	0.39	-1.0
33,812	-		ABCV34_RS00195	0.41	-1.8
33,834	-		ABCV34_RS00195	0.42	-2.4
33,901	+		ABCV34_RS00195	0.47	-4.0
33,901	+		ABCV34_RS00195	0.47	+2.0
33,951	-		ABCV34_RS00195	0.51	-1.7
33,962	+		ABCV34_RS00195	0.52	-1.0
33,963	-		ABCV34_RS00195	0.52	-2.2
33,963	-		ABCV34_RS00195	0.52	-0.4
33,996	+		ABCV34_RS00195	0.55	-0.4
34,095	+		ABCV34_RS00195	0.62	-1.1
34,095	+		ABCV34_RS00195	0.62	-4.2
34,096	-		ABCV34_RS00195	0.62	+0.5
34,116	+		ABCV34_RS00195	0.64	-2.1
34,116	+		ABCV34_RS00195	0.64	-3.3
34,116	+		ABCV34_RS00195	0.64	-4.1
34,116	+		ABCV34_RS00195	0.64	-0.2
34,116	+		ABCV34_RS00195	0.64	-0.4
34,116	+		ABCV34_RS00195	0.64	-2.4
34,116	+		ABCV34_RS00195	0.64	-2.5
34,116	+		ABCV34_RS00195	0.64	-1.5
34,116	+		ABCV34_RS00195	0.64	-2.9
34,116	+		ABCV34_RS00195	0.64	-0.8
34,117	-		ABCV34_RS00195	0.64	-2.4
34,117	-		ABCV34_RS00195	0.64	-3.3
34,117	-		ABCV34_RS00195	0.64	-1.0
34,117	-		ABCV34_RS00195	0.64	+0.1
34,117	-		ABCV34_RS00195	0.64	-1.8
34,117	-		ABCV34_RS00195	0.64	-1.5
34,117	-		ABCV34_RS00195	0.64	-4.6
34,117	-		ABCV34_RS00195	0.64	-1.5
34,117	-		ABCV34_RS00195	0.64	+3.1
34,117	-		ABCV34_RS00195	0.64	-2.4
34,117	-		ABCV34_RS00195	0.64	+0.0
34,117	-		ABCV34_RS00195	0.64	-2.5
34,117	-		ABCV34_RS00195	0.64	-3.5
34,117	-		ABCV34_RS00195	0.64	-2.9
34,117	-		ABCV34_RS00195	0.64	+0.0
34,117	-		ABCV34_RS00195	0.64	-3.2
34,155	+		ABCV34_RS00195	0.67	-1.8
34,155	+		ABCV34_RS00195	0.67	-0.2
34,155	+		ABCV34_RS00195	0.67	+2.1
34,155	+		ABCV34_RS00195	0.67	-3.4
34,155	+		ABCV34_RS00195	0.67	-2.8
34,155	+		ABCV34_RS00195	0.67	-1.7
34,155	+		ABCV34_RS00195	0.67	+1.1
34,156	-		ABCV34_RS00195	0.67	+0.0
34,156	-		ABCV34_RS00195	0.67	-0.8
34,156	-		ABCV34_RS00195	0.67	-4.1
34,156	-		ABCV34_RS00195	0.67	-1.8
34,156	-		ABCV34_RS00195	0.67	-0.6
34,156	-		ABCV34_RS00195	0.67	-0.4
34,174	-		ABCV34_RS00195	0.68	-1.7
34,174	-		ABCV34_RS00195	0.68	-4.3
34,273	-		ABCV34_RS00195	0.76	-0.9