Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04730

Experiment: LB agar plate coculture with Mixed culture; Pseudomonas plecoglossicida TBS_049 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04729 and MPMX20_04730 are separated by 69 nucleotidesMPMX20_04730 and MPMX20_04731 are separated by 52 nucleotides MPMX20_04729: MPMX20_04729 - Nucleoid occlusion protein, at 76,852 to 78,849 _04729 MPMX20_04730: MPMX20_04730 - hypothetical protein, at 78,919 to 79,161 _04730 MPMX20_04731: MPMX20_04731 - Plasmid-derived single-stranded DNA-binding protein, at 79,214 to 79,771 _04731 Position (kb) 78 79 80Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 77.924 kb on + strand, within MPMX20_04729at 77.925 kb on - strand, within MPMX20_04729at 77.932 kb on - strand, within MPMX20_04729at 77.933 kb on - strand, within MPMX20_04729at 77.937 kb on - strand, within MPMX20_04729at 77.994 kb on - strand, within MPMX20_04729at 77.995 kb on + strand, within MPMX20_04729at 78.008 kb on - strand, within MPMX20_04729at 78.043 kb on + strand, within MPMX20_04729at 78.043 kb on + strand, within MPMX20_04729at 78.045 kb on + strand, within MPMX20_04729at 78.049 kb on - strand, within MPMX20_04729at 78.050 kb on + strand, within MPMX20_04729at 78.051 kb on - strand, within MPMX20_04729at 78.053 kb on - strand, within MPMX20_04729at 78.053 kb on - strand, within MPMX20_04729at 78.082 kb on + strand, within MPMX20_04729at 78.086 kb on + strand, within MPMX20_04729at 78.088 kb on + strand, within MPMX20_04729at 78.088 kb on + strand, within MPMX20_04729at 78.088 kb on + strand, within MPMX20_04729at 78.096 kb on - strand, within MPMX20_04729at 78.145 kb on + strand, within MPMX20_04729at 78.171 kb on + strand, within MPMX20_04729at 78.179 kb on - strand, within MPMX20_04729at 78.182 kb on + strand, within MPMX20_04729at 78.185 kb on - strand, within MPMX20_04729at 78.185 kb on - strand, within MPMX20_04729at 78.185 kb on - strand, within MPMX20_04729at 78.185 kb on - strand, within MPMX20_04729at 78.190 kb on - strand, within MPMX20_04729at 78.195 kb on + strand, within MPMX20_04729at 78.207 kb on + strand, within MPMX20_04729at 78.207 kb on + strand, within MPMX20_04729at 78.215 kb on - strand, within MPMX20_04729at 78.215 kb on - strand, within MPMX20_04729at 78.251 kb on + strand, within MPMX20_04729at 78.257 kb on - strand, within MPMX20_04729at 78.259 kb on - strand, within MPMX20_04729at 78.261 kb on + strand, within MPMX20_04729at 78.261 kb on + strand, within MPMX20_04729at 78.261 kb on + strand, within MPMX20_04729at 78.269 kb on - strand, within MPMX20_04729at 78.269 kb on - strand, within MPMX20_04729at 78.269 kb on - strand, within MPMX20_04729at 78.269 kb on - strand, within MPMX20_04729at 78.350 kb on + strand, within MPMX20_04729at 78.353 kb on + strand, within MPMX20_04729at 78.383 kb on + strand, within MPMX20_04729at 78.383 kb on + strand, within MPMX20_04729at 78.383 kb on + strand, within MPMX20_04729at 78.391 kb on - strand, within MPMX20_04729at 78.391 kb on - strand, within MPMX20_04729at 78.391 kb on - strand, within MPMX20_04729at 78.391 kb on - strand, within MPMX20_04729at 78.391 kb on - strand, within MPMX20_04729at 78.391 kb on - strand, within MPMX20_04729at 78.391 kb on - strand, within MPMX20_04729at 78.393 kb on + strand, within MPMX20_04729at 78.400 kb on - strand, within MPMX20_04729at 78.421 kb on - strand, within MPMX20_04729at 78.469 kb on + strand, within MPMX20_04729at 78.550 kb on + strand, within MPMX20_04729at 78.565 kb on - strand, within MPMX20_04729at 78.589 kb on + strand, within MPMX20_04729at 78.650 kb on + strandat 78.657 kb on - strandat 78.673 kb on - strandat 78.692 kb on + strandat 78.692 kb on + strandat 78.700 kb on - strandat 78.705 kb on + strandat 78.710 kb on + strandat 78.710 kb on + strandat 78.710 kb on + strandat 78.718 kb on - strandat 78.718 kb on - strandat 78.764 kb on + strandat 78.772 kb on - strandat 78.772 kb on - strandat 78.828 kb on - strandat 78.843 kb on + strandat 78.851 kb on + strandat 78.851 kb on + strandat 78.859 kb on - strandat 78.859 kb on - strandat 78.873 kb on - strandat 78.885 kb on - strandat 78.887 kb on - strandat 78.887 kb on - strandat 78.887 kb on - strandat 78.914 kb on + strandat 78.946 kb on - strand, within MPMX20_04730at 78.998 kb on + strand, within MPMX20_04730at 79.078 kb on - strand, within MPMX20_04730at 79.080 kb on + strand, within MPMX20_04730at 79.091 kb on + strand, within MPMX20_04730at 79.091 kb on + strand, within MPMX20_04730at 79.091 kb on + strand, within MPMX20_04730at 79.091 kb on + strand, within MPMX20_04730at 79.091 kb on + strand, within MPMX20_04730at 79.099 kb on - strand, within MPMX20_04730at 79.099 kb on - strand, within MPMX20_04730at 79.099 kb on - strand, within MPMX20_04730at 79.099 kb on - strand, within MPMX20_04730at 79.138 kb on - strandat 79.143 kb on + strandat 79.143 kb on + strandat 79.143 kb on + strandat 79.143 kb on + strandat 79.151 kb on - strandat 79.212 kb on + strandat 79.212 kb on + strandat 79.212 kb on + strandat 79.212 kb on + strandat 79.212 kb on + strandat 79.220 kb on - strandat 79.220 kb on - strandat 79.220 kb on - strandat 79.227 kb on + strandat 79.289 kb on + strand, within MPMX20_04731at 79.318 kb on - strand, within MPMX20_04731at 79.387 kb on + strand, within MPMX20_04731at 79.396 kb on - strand, within MPMX20_04731at 79.401 kb on + strand, within MPMX20_04731at 79.401 kb on + strand, within MPMX20_04731at 79.403 kb on - strand, within MPMX20_04731at 79.431 kb on + strand, within MPMX20_04731at 79.431 kb on + strand, within MPMX20_04731at 79.446 kb on + strand, within MPMX20_04731at 79.446 kb on + strand, within MPMX20_04731at 79.459 kb on - strand, within MPMX20_04731at 79.528 kb on - strand, within MPMX20_04731at 79.541 kb on + strand, within MPMX20_04731at 79.558 kb on + strand, within MPMX20_04731at 79.581 kb on + strand, within MPMX20_04731at 79.583 kb on - strand, within MPMX20_04731at 79.594 kb on + strand, within MPMX20_04731at 79.595 kb on - strand, within MPMX20_04731at 79.635 kb on - strand, within MPMX20_04731at 79.661 kb on - strand, within MPMX20_04731at 79.662 kb on - strand, within MPMX20_04731at 79.662 kb on - strand, within MPMX20_04731at 79.687 kb on - strand, within MPMX20_04731at 79.691 kb on + strand, within MPMX20_04731at 79.701 kb on - strand, within MPMX20_04731at 79.747 kb on - strandat 79.767 kb on + strandat 79.767 kb on + strandat 79.821 kb on - strandat 79.822 kb on - strandat 79.836 kb on + strandat 79.844 kb on - strandat 79.900 kb on - strandat 79.900 kb on - strandat 79.915 kb on + strandat 79.915 kb on + strandat 79.922 kb on - strandat 79.923 kb on - strandat 79.923 kb on - strandat 79.923 kb on - strandat 79.923 kb on - strandat 79.923 kb on - strandat 79.943 kb on + strandat 79.968 kb on + strandat 79.973 kb on + strandat 79.973 kb on + strandat 79.976 kb on - strandat 79.983 kb on + strandat 80.096 kb on + strandat 80.106 kb on + strandat 80.147 kb on + strandat 80.155 kb on - strandat 80.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Pseudomonas plecoglossicida TBS_049 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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77,924 + MPMX20_04729 0.54 -2.4
77,925 - MPMX20_04729 0.54 -1.8
77,932 - MPMX20_04729 0.54 +0.3
77,933 - MPMX20_04729 0.54 +0.1
77,937 - MPMX20_04729 0.54 -0.1
77,994 - MPMX20_04729 0.57 -1.1
77,995 + MPMX20_04729 0.57 -1.8
78,008 - MPMX20_04729 0.58 -1.3
78,043 + MPMX20_04729 0.60 +0.6
78,043 + MPMX20_04729 0.60 -0.2
78,045 + MPMX20_04729 0.60 +1.3
78,049 - MPMX20_04729 0.60 +1.3
78,050 + MPMX20_04729 0.60 +0.9
78,051 - MPMX20_04729 0.60 +0.6
78,053 - MPMX20_04729 0.60 +0.6
78,053 - MPMX20_04729 0.60 +0.3
78,082 + MPMX20_04729 0.62 -0.4
78,086 + MPMX20_04729 0.62 +0.3
78,088 + MPMX20_04729 0.62 -0.8
78,088 + MPMX20_04729 0.62 +0.2
78,088 + MPMX20_04729 0.62 +0.9
78,096 - MPMX20_04729 0.62 -0.6
78,145 + MPMX20_04729 0.65 -0.9
78,171 + MPMX20_04729 0.66 -0.3
78,179 - MPMX20_04729 0.66 +1.7
78,182 + MPMX20_04729 0.67 -1.0
78,185 - MPMX20_04729 0.67 -2.6
78,185 - MPMX20_04729 0.67 +1.0
78,185 - MPMX20_04729 0.67 +0.3
78,185 - MPMX20_04729 0.67 +0.5
78,190 - MPMX20_04729 0.67 +1.2
78,195 + MPMX20_04729 0.67 -1.1
78,207 + MPMX20_04729 0.68 +0.9
78,207 + MPMX20_04729 0.68 +1.7
78,215 - MPMX20_04729 0.68 +0.1
78,215 - MPMX20_04729 0.68 -0.8
78,251 + MPMX20_04729 0.70 -0.8
78,257 - MPMX20_04729 0.70 -2.3
78,259 - MPMX20_04729 0.70 +1.2
78,261 + MPMX20_04729 0.71 -1.0
78,261 + MPMX20_04729 0.71 +0.4
78,261 + MPMX20_04729 0.71 +0.5
78,269 - MPMX20_04729 0.71 -0.5
78,269 - MPMX20_04729 0.71 +1.0
78,269 - MPMX20_04729 0.71 +0.5
78,269 - MPMX20_04729 0.71 -0.6
78,350 + MPMX20_04729 0.75 -1.5
78,353 + MPMX20_04729 0.75 +3.7
78,383 + MPMX20_04729 0.77 +0.6
78,383 + MPMX20_04729 0.77 +0.6
78,383 + MPMX20_04729 0.77 +0.6
78,391 - MPMX20_04729 0.77 -2.0
78,391 - MPMX20_04729 0.77 -3.1
78,391 - MPMX20_04729 0.77 +1.4
78,391 - MPMX20_04729 0.77 -1.1
78,391 - MPMX20_04729 0.77 +1.0
78,391 - MPMX20_04729 0.77 +1.5
78,391 - MPMX20_04729 0.77 -2.6
78,393 + MPMX20_04729 0.77 -1.0
78,400 - MPMX20_04729 0.77 -2.4
78,421 - MPMX20_04729 0.79 +1.3
78,469 + MPMX20_04729 0.81 +0.8
78,550 + MPMX20_04729 0.85 +0.6
78,565 - MPMX20_04729 0.86 -0.4
78,589 + MPMX20_04729 0.87 +0.7
78,650 + +0.2
78,657 - +0.5
78,673 - -1.5
78,692 + +0.6
78,692 + +0.1
78,700 - -0.0
78,705 + +1.5
78,710 + -0.5
78,710 + -1.6
78,710 + -0.7
78,718 - -0.4
78,718 - +0.0
78,764 + -0.2
78,772 - +0.6
78,772 - +0.5
78,828 - -0.4
78,843 + +0.7
78,851 + -2.3
78,851 + -0.4
78,859 - -1.3
78,859 - -3.0
78,873 - -2.5
78,885 - -1.9
78,887 - -2.1
78,887 - -1.5
78,887 - -4.0
78,914 + -2.3
78,946 - MPMX20_04730 0.11 -2.5
78,998 + MPMX20_04730 0.33 +0.5
79,078 - MPMX20_04730 0.65 -4.3
79,080 + MPMX20_04730 0.66 -0.4
79,091 + MPMX20_04730 0.71 -0.8
79,091 + MPMX20_04730 0.71 +1.0
79,091 + MPMX20_04730 0.71 -1.0
79,091 + MPMX20_04730 0.71 +0.6
79,091 + MPMX20_04730 0.71 -0.9
79,099 - MPMX20_04730 0.74 -5.2
79,099 - MPMX20_04730 0.74 -4.2
79,099 - MPMX20_04730 0.74 -3.6
79,099 - MPMX20_04730 0.74 -3.1
79,138 - -4.0
79,143 + -1.6
79,143 + -1.7
79,143 + +0.8
79,143 + +0.0
79,151 - -3.1
79,212 + -1.5
79,212 + -0.3
79,212 + -2.4
79,212 + +0.4
79,212 + -2.3
79,220 - -5.0
79,220 - -5.2
79,220 - -2.3
79,227 + -1.3
79,289 + MPMX20_04731 0.13 -1.6
79,318 - MPMX20_04731 0.19 -5.7
79,387 + MPMX20_04731 0.31 -1.9
79,396 - MPMX20_04731 0.33 -1.0
79,401 + MPMX20_04731 0.34 +0.6
79,401 + MPMX20_04731 0.34 -1.5
79,403 - MPMX20_04731 0.34 -1.4
79,431 + MPMX20_04731 0.39 +1.6
79,431 + MPMX20_04731 0.39 -1.4
79,446 + MPMX20_04731 0.42 -0.5
79,446 + MPMX20_04731 0.42 +1.1
79,459 - MPMX20_04731 0.44 -2.8
79,528 - MPMX20_04731 0.56 -4.5
79,541 + MPMX20_04731 0.59 +1.4
79,558 + MPMX20_04731 0.62 -0.3
79,581 + MPMX20_04731 0.66 -2.5
79,583 - MPMX20_04731 0.66 -2.1
79,594 + MPMX20_04731 0.68 -0.1
79,595 - MPMX20_04731 0.68 -4.2
79,635 - MPMX20_04731 0.75 -1.6
79,661 - MPMX20_04731 0.80 -1.2
79,662 - MPMX20_04731 0.80 -0.7
79,662 - MPMX20_04731 0.80 -2.7
79,687 - MPMX20_04731 0.85 -3.8
79,691 + MPMX20_04731 0.85 -2.3
79,701 - MPMX20_04731 0.87 -3.4
79,747 - -0.4
79,767 + -1.2
79,767 + +0.5
79,821 - -4.4
79,822 - -0.7
79,836 + -0.1
79,844 - -2.4
79,900 - -6.0
79,900 - -2.8
79,915 + +0.1
79,915 + -0.3
79,922 - -1.8
79,923 - -2.7
79,923 - -6.2
79,923 - -3.8
79,923 - -4.2
79,923 - -2.3
79,943 + +0.2
79,968 + -2.7
79,973 + -0.7
79,973 + -2.5
79,976 - -4.9
79,983 + +1.9
80,096 + -0.9
80,106 + +0.1
80,147 + -0.2
80,155 - -1.2
80,155 - -2.0

Or see this region's nucleotide sequence