Experiment: LB agar plate coculture with Mixed culture; Pseudomonas plecoglossicida TBS_049 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03454 and MPMX20_03455 are separated by 45 nucleotides MPMX20_03455 and MPMX20_03456 overlap by 4 nucleotides
MPMX20_03454: MPMX20_03454 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,642,710 to 3,644,065
_03454
MPMX20_03455: MPMX20_03455 - hypothetical protein, at 3,644,111 to 3,644,434
_03455
MPMX20_03456: MPMX20_03456 - Alpha-ketoglutarate permease, at 3,644,431 to 3,645,726
_03456
Position (kb)
3644
3645 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3644.067 kb on + strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.123 kb on + strand at 3644.173 kb on - strand, within MPMX20_03455 at 3644.188 kb on + strand, within MPMX20_03455 at 3644.188 kb on + strand, within MPMX20_03455 at 3644.196 kb on - strand, within MPMX20_03455 at 3644.401 kb on + strand, within MPMX20_03455 at 3644.570 kb on + strand, within MPMX20_03456 at 3644.570 kb on + strand, within MPMX20_03456 at 3644.580 kb on + strand, within MPMX20_03456 at 3644.588 kb on - strand, within MPMX20_03456 at 3644.638 kb on + strand, within MPMX20_03456 at 3644.646 kb on - strand, within MPMX20_03456 at 3644.714 kb on - strand, within MPMX20_03456 at 3644.768 kb on - strand, within MPMX20_03456 at 3644.770 kb on - strand, within MPMX20_03456 at 3644.816 kb on - strand, within MPMX20_03456 at 3644.850 kb on + strand, within MPMX20_03456 at 3644.850 kb on + strand, within MPMX20_03456 at 3644.914 kb on - strand, within MPMX20_03456 at 3644.964 kb on - strand, within MPMX20_03456 at 3645.047 kb on + strand, within MPMX20_03456 at 3645.075 kb on - strand, within MPMX20_03456 at 3645.310 kb on + strand, within MPMX20_03456
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Pseudomonas plecoglossicida TBS_049 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,644,067 + +0.6 3,644,075 - -0.5 3,644,075 - +3.1 3,644,075 - +0.6 3,644,075 - +0.4 3,644,075 - -0.7 3,644,123 + +0.5 3,644,173 - MPMX20_03455 0.19 +0.5 3,644,188 + MPMX20_03455 0.24 -1.3 3,644,188 + MPMX20_03455 0.24 -0.3 3,644,196 - MPMX20_03455 0.26 -1.1 3,644,401 + MPMX20_03455 0.90 +0.1 3,644,570 + MPMX20_03456 0.11 -3.8 3,644,570 + MPMX20_03456 0.11 -0.1 3,644,580 + MPMX20_03456 0.11 +1.5 3,644,588 - MPMX20_03456 0.12 +1.2 3,644,638 + MPMX20_03456 0.16 -1.1 3,644,646 - MPMX20_03456 0.17 -0.0 3,644,714 - MPMX20_03456 0.22 -2.9 3,644,768 - MPMX20_03456 0.26 +0.2 3,644,770 - MPMX20_03456 0.26 +0.5 3,644,816 - MPMX20_03456 0.30 +1.3 3,644,850 + MPMX20_03456 0.32 +0.4 3,644,850 + MPMX20_03456 0.32 -0.6 3,644,914 - MPMX20_03456 0.37 -5.1 3,644,964 - MPMX20_03456 0.41 +0.7 3,645,047 + MPMX20_03456 0.48 +0.6 3,645,075 - MPMX20_03456 0.50 +0.7 3,645,310 + MPMX20_03456 0.68 -1.1
Or see this region's nucleotide sequence