Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00469

Experiment: LB agar plate coculture with Mixed culture; Pseudomonas plecoglossicida TBS_049 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00467 and MPMX20_00468 overlap by 4 nucleotidesMPMX20_00468 and MPMX20_00469 are separated by 111 nucleotidesMPMX20_00469 and MPMX20_00470 are separated by 357 nucleotides MPMX20_00467: MPMX20_00467 - hypothetical protein, at 483,847 to 484,569 _00467 MPMX20_00468: MPMX20_00468 - HTH-type transcriptional regulator UlaR, at 484,566 to 485,321 _00468 MPMX20_00469: MPMX20_00469 - putative L-ascorbate-6-phosphate lactonase UlaG, at 485,433 to 486,497 _00469 MPMX20_00470: MPMX20_00470 - Ascorbate-specific PTS system EIIC component, at 486,855 to 488,255 _00470 Position (kb) 485 486 487Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 484.439 kb on + strand, within MPMX20_00467at 484.465 kb on + strand, within MPMX20_00467at 484.528 kb on + strandat 484.586 kb on - strandat 484.590 kb on - strandat 484.620 kb on - strandat 484.663 kb on - strand, within MPMX20_00468at 484.702 kb on - strand, within MPMX20_00468at 484.702 kb on - strand, within MPMX20_00468at 484.707 kb on + strand, within MPMX20_00468at 484.707 kb on + strand, within MPMX20_00468at 484.759 kb on + strand, within MPMX20_00468at 484.782 kb on - strand, within MPMX20_00468at 484.842 kb on + strand, within MPMX20_00468at 484.851 kb on + strand, within MPMX20_00468at 484.859 kb on - strand, within MPMX20_00468at 484.861 kb on - strand, within MPMX20_00468at 484.919 kb on - strand, within MPMX20_00468at 484.996 kb on - strand, within MPMX20_00468at 485.022 kb on + strand, within MPMX20_00468at 485.022 kb on + strand, within MPMX20_00468at 485.022 kb on + strand, within MPMX20_00468at 485.042 kb on - strand, within MPMX20_00468at 485.052 kb on - strand, within MPMX20_00468at 485.052 kb on - strand, within MPMX20_00468at 485.052 kb on - strand, within MPMX20_00468at 485.126 kb on + strand, within MPMX20_00468at 485.150 kb on + strand, within MPMX20_00468at 485.200 kb on + strand, within MPMX20_00468at 485.262 kb on + strandat 485.270 kb on - strandat 485.270 kb on - strandat 485.277 kb on + strandat 485.309 kb on + strandat 485.410 kb on + strandat 485.425 kb on - strandat 485.451 kb on - strandat 485.456 kb on + strandat 485.459 kb on - strandat 485.461 kb on + strandat 485.464 kb on - strandat 485.476 kb on - strandat 485.488 kb on - strandat 485.488 kb on - strandat 485.550 kb on - strand, within MPMX20_00469at 485.564 kb on + strand, within MPMX20_00469at 485.564 kb on + strand, within MPMX20_00469at 485.572 kb on - strand, within MPMX20_00469at 485.572 kb on - strand, within MPMX20_00469at 485.637 kb on - strand, within MPMX20_00469at 485.669 kb on + strand, within MPMX20_00469at 485.702 kb on + strand, within MPMX20_00469at 485.713 kb on - strand, within MPMX20_00469at 485.780 kb on + strand, within MPMX20_00469at 485.803 kb on - strand, within MPMX20_00469at 485.803 kb on - strand, within MPMX20_00469at 485.829 kb on + strand, within MPMX20_00469at 485.837 kb on - strand, within MPMX20_00469at 485.887 kb on - strand, within MPMX20_00469at 485.928 kb on - strand, within MPMX20_00469at 485.934 kb on - strand, within MPMX20_00469at 485.945 kb on + strand, within MPMX20_00469at 485.950 kb on + strand, within MPMX20_00469at 485.953 kb on - strand, within MPMX20_00469at 485.953 kb on - strand, within MPMX20_00469at 485.953 kb on - strand, within MPMX20_00469at 485.975 kb on - strand, within MPMX20_00469at 486.045 kb on + strand, within MPMX20_00469at 486.060 kb on + strand, within MPMX20_00469at 486.060 kb on + strand, within MPMX20_00469at 486.068 kb on - strand, within MPMX20_00469at 486.068 kb on - strand, within MPMX20_00469at 486.163 kb on + strand, within MPMX20_00469at 486.215 kb on + strand, within MPMX20_00469at 486.285 kb on - strand, within MPMX20_00469at 486.346 kb on - strand, within MPMX20_00469at 486.354 kb on + strand, within MPMX20_00469at 486.387 kb on + strand, within MPMX20_00469at 486.400 kb on + strandat 486.408 kb on - strandat 486.417 kb on - strandat 486.438 kb on - strandat 486.459 kb on - strandat 486.461 kb on - strandat 486.481 kb on - strandat 486.811 kb on + strandat 486.821 kb on - strandat 486.833 kb on - strandat 486.833 kb on - strandat 486.840 kb on + strandat 486.850 kb on + strandat 486.858 kb on - strandat 486.858 kb on - strandat 486.858 kb on - strandat 486.858 kb on - strandat 486.858 kb on - strandat 486.920 kb on + strandat 486.942 kb on + strandat 486.943 kb on + strandat 486.943 kb on + strandat 486.943 kb on + strandat 486.951 kb on - strandat 486.951 kb on - strandat 486.956 kb on + strandat 486.998 kb on - strand, within MPMX20_00470at 487.034 kb on - strand, within MPMX20_00470at 487.056 kb on - strand, within MPMX20_00470at 487.056 kb on - strand, within MPMX20_00470at 487.130 kb on - strand, within MPMX20_00470at 487.152 kb on + strand, within MPMX20_00470at 487.152 kb on + strand, within MPMX20_00470at 487.152 kb on + strand, within MPMX20_00470at 487.162 kb on + strand, within MPMX20_00470at 487.167 kb on + strand, within MPMX20_00470at 487.167 kb on + strand, within MPMX20_00470at 487.170 kb on - strand, within MPMX20_00470at 487.170 kb on - strand, within MPMX20_00470at 487.186 kb on + strand, within MPMX20_00470at 487.190 kb on + strand, within MPMX20_00470at 487.201 kb on + strand, within MPMX20_00470at 487.241 kb on - strand, within MPMX20_00470at 487.282 kb on - strand, within MPMX20_00470at 487.326 kb on + strand, within MPMX20_00470at 487.334 kb on - strand, within MPMX20_00470at 487.335 kb on - strand, within MPMX20_00470at 487.339 kb on - strand, within MPMX20_00470at 487.357 kb on - strand, within MPMX20_00470at 487.358 kb on + strand, within MPMX20_00470at 487.366 kb on - strand, within MPMX20_00470at 487.366 kb on - strand, within MPMX20_00470at 487.368 kb on - strand, within MPMX20_00470at 487.385 kb on + strand, within MPMX20_00470at 487.385 kb on + strand, within MPMX20_00470at 487.393 kb on - strand, within MPMX20_00470at 487.393 kb on - strand, within MPMX20_00470at 487.400 kb on + strand, within MPMX20_00470at 487.432 kb on + strand, within MPMX20_00470

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Pseudomonas plecoglossicida TBS_049 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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484,439 + MPMX20_00467 0.82 +0.8
484,465 + MPMX20_00467 0.85 -0.7
484,528 + -1.6
484,586 - +0.5
484,590 - -2.7
484,620 - -0.7
484,663 - MPMX20_00468 0.13 -1.0
484,702 - MPMX20_00468 0.18 +1.0
484,702 - MPMX20_00468 0.18 -0.4
484,707 + MPMX20_00468 0.19 -1.1
484,707 + MPMX20_00468 0.19 -0.7
484,759 + MPMX20_00468 0.26 -1.9
484,782 - MPMX20_00468 0.29 -2.1
484,842 + MPMX20_00468 0.37 -2.7
484,851 + MPMX20_00468 0.38 +1.0
484,859 - MPMX20_00468 0.39 +0.1
484,861 - MPMX20_00468 0.39 +0.1
484,919 - MPMX20_00468 0.47 +1.5
484,996 - MPMX20_00468 0.57 +0.5
485,022 + MPMX20_00468 0.60 +1.6
485,022 + MPMX20_00468 0.60 -0.6
485,022 + MPMX20_00468 0.60 -3.9
485,042 - MPMX20_00468 0.63 -0.8
485,052 - MPMX20_00468 0.64 -1.7
485,052 - MPMX20_00468 0.64 +0.7
485,052 - MPMX20_00468 0.64 -0.5
485,126 + MPMX20_00468 0.74 +0.8
485,150 + MPMX20_00468 0.77 -0.6
485,200 + MPMX20_00468 0.84 -0.7
485,262 + -2.1
485,270 - -1.6
485,270 - -2.3
485,277 + -1.1
485,309 + -1.3
485,410 + -1.2
485,425 - -0.9
485,451 - +1.7
485,456 + -0.1
485,459 - -2.0
485,461 + -1.3
485,464 - +0.7
485,476 - +0.6
485,488 - -0.6
485,488 - -0.6
485,550 - MPMX20_00469 0.11 -0.1
485,564 + MPMX20_00469 0.12 -3.2
485,564 + MPMX20_00469 0.12 +0.2
485,572 - MPMX20_00469 0.13 +0.8
485,572 - MPMX20_00469 0.13 -0.8
485,637 - MPMX20_00469 0.19 -0.2
485,669 + MPMX20_00469 0.22 +0.8
485,702 + MPMX20_00469 0.25 +1.2
485,713 - MPMX20_00469 0.26 +0.3
485,780 + MPMX20_00469 0.33 -1.6
485,803 - MPMX20_00469 0.35 -0.4
485,803 - MPMX20_00469 0.35 -0.5
485,829 + MPMX20_00469 0.37 +1.0
485,837 - MPMX20_00469 0.38 +1.4
485,887 - MPMX20_00469 0.43 +0.7
485,928 - MPMX20_00469 0.46 +1.0
485,934 - MPMX20_00469 0.47 +0.7
485,945 + MPMX20_00469 0.48 -0.8
485,950 + MPMX20_00469 0.49 +0.3
485,953 - MPMX20_00469 0.49 +1.2
485,953 - MPMX20_00469 0.49 +0.9
485,953 - MPMX20_00469 0.49 +0.4
485,975 - MPMX20_00469 0.51 -0.6
486,045 + MPMX20_00469 0.57 -2.2
486,060 + MPMX20_00469 0.59 -0.6
486,060 + MPMX20_00469 0.59 +0.4
486,068 - MPMX20_00469 0.60 -2.2
486,068 - MPMX20_00469 0.60 +1.3
486,163 + MPMX20_00469 0.69 +0.4
486,215 + MPMX20_00469 0.73 -0.5
486,285 - MPMX20_00469 0.80 -3.6
486,346 - MPMX20_00469 0.86 +1.6
486,354 + MPMX20_00469 0.86 -3.9
486,387 + MPMX20_00469 0.90 -1.3
486,400 + -3.7
486,408 - +0.4
486,417 - +0.7
486,438 - +0.5
486,459 - +1.0
486,461 - -0.3
486,481 - -2.9
486,811 + -0.4
486,821 - -0.4
486,833 - +1.0
486,833 - +0.5
486,840 + -0.4
486,850 + -3.5
486,858 - -2.0
486,858 - +1.1
486,858 - +0.4
486,858 - -0.5
486,858 - +0.5
486,920 + +0.9
486,942 + -1.0
486,943 + +0.3
486,943 + +0.5
486,943 + +1.4
486,951 - +0.6
486,951 - -4.6
486,956 + -0.6
486,998 - MPMX20_00470 0.10 -1.5
487,034 - MPMX20_00470 0.13 -1.1
487,056 - MPMX20_00470 0.14 +1.4
487,056 - MPMX20_00470 0.14 -0.1
487,130 - MPMX20_00470 0.20 -0.7
487,152 + MPMX20_00470 0.21 +0.1
487,152 + MPMX20_00470 0.21 +2.6
487,152 + MPMX20_00470 0.21 +0.3
487,162 + MPMX20_00470 0.22 -1.5
487,167 + MPMX20_00470 0.22 +0.5
487,167 + MPMX20_00470 0.22 +0.7
487,170 - MPMX20_00470 0.22 -1.8
487,170 - MPMX20_00470 0.22 +0.7
487,186 + MPMX20_00470 0.24 +0.7
487,190 + MPMX20_00470 0.24 -2.8
487,201 + MPMX20_00470 0.25 -1.6
487,241 - MPMX20_00470 0.28 -0.0
487,282 - MPMX20_00470 0.30 +0.5
487,326 + MPMX20_00470 0.34 +1.8
487,334 - MPMX20_00470 0.34 +3.6
487,335 - MPMX20_00470 0.34 -0.5
487,339 - MPMX20_00470 0.35 +0.4
487,357 - MPMX20_00470 0.36 -1.5
487,358 + MPMX20_00470 0.36 +0.3
487,366 - MPMX20_00470 0.36 -1.8
487,366 - MPMX20_00470 0.36 -2.3
487,368 - MPMX20_00470 0.37 -0.6
487,385 + MPMX20_00470 0.38 +0.5
487,385 + MPMX20_00470 0.38 -1.2
487,393 - MPMX20_00470 0.38 +1.1
487,393 - MPMX20_00470 0.38 -2.3
487,400 + MPMX20_00470 0.39 +0.1
487,432 + MPMX20_00470 0.41 -0.0

Or see this region's nucleotide sequence