Experiment: LB agar plate coculture with Mixed culture; Chryseobacterium proteolyticum TBS_027 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02925 and MPMX20_02926 are separated by 40 nucleotides MPMX20_02926 and MPMX20_02927 overlap by 4 nucleotides MPMX20_02927 and MPMX20_02928 overlap by 4 nucleotides MPMX20_02928 and MPMX20_02929 overlap by 4 nucleotides MPMX20_02929 and MPMX20_02930 are separated by 2 nucleotides MPMX20_02930 and MPMX20_02931 are separated by 135 nucleotides MPMX20_02931 and MPMX20_02932 are separated by 59 nucleotides MPMX20_02932 and MPMX20_02933 are separated by 45 nucleotides
MPMX20_02925: MPMX20_02925 - hypothetical protein, at 3,059,275 to 3,061,236
_02925
MPMX20_02926: MPMX20_02926 - hypothetical protein, at 3,061,277 to 3,061,495
_02926
MPMX20_02927: MPMX20_02927 - hypothetical protein, at 3,061,492 to 3,061,809
_02927
MPMX20_02928: MPMX20_02928 - hypothetical protein, at 3,061,806 to 3,061,997
_02928
MPMX20_02929: MPMX20_02929 - hypothetical protein, at 3,061,994 to 3,062,086
_02929
MPMX20_02930: MPMX20_02930 - hypothetical protein, at 3,062,089 to 3,062,307
_02930
MPMX20_02931: MPMX20_02931 - hypothetical protein, at 3,062,443 to 3,062,724
_02931
MPMX20_02932: MPMX20_02932 - hypothetical protein, at 3,062,784 to 3,063,029
_02932
MPMX20_02933: MPMX20_02933 - Putative defective protein IntQ, at 3,063,075 to 3,064,370
_02933
Position (kb)
3062
3063 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3061.108 kb on - strand at 3061.194 kb on + strand at 3061.200 kb on + strand at 3061.223 kb on - strand at 3061.233 kb on - strand at 3061.318 kb on + strand, within MPMX20_02926 at 3061.323 kb on + strand, within MPMX20_02926 at 3061.371 kb on - strand, within MPMX20_02926 at 3061.428 kb on + strand, within MPMX20_02926 at 3061.436 kb on + strand, within MPMX20_02926 at 3061.446 kb on - strand, within MPMX20_02926 at 3061.485 kb on - strand at 3061.523 kb on + strand at 3061.539 kb on - strand, within MPMX20_02927 at 3061.544 kb on + strand, within MPMX20_02927 at 3061.544 kb on + strand, within MPMX20_02927 at 3061.574 kb on - strand, within MPMX20_02927 at 3061.574 kb on - strand, within MPMX20_02927 at 3061.605 kb on - strand, within MPMX20_02927 at 3061.636 kb on - strand, within MPMX20_02927 at 3061.665 kb on + strand, within MPMX20_02927 at 3061.667 kb on - strand, within MPMX20_02927 at 3061.803 kb on + strand at 3061.813 kb on + strand at 3061.816 kb on - strand at 3061.856 kb on - strand, within MPMX20_02928 at 3061.858 kb on + strand, within MPMX20_02928 at 3061.921 kb on - strand, within MPMX20_02928 at 3061.976 kb on - strand, within MPMX20_02928 at 3061.992 kb on + strand at 3061.995 kb on - strand at 3062.057 kb on - strand, within MPMX20_02929 at 3062.071 kb on + strand, within MPMX20_02929 at 3062.079 kb on - strand at 3062.080 kb on + strand at 3062.114 kb on - strand, within MPMX20_02930 at 3062.126 kb on - strand, within MPMX20_02930 at 3062.128 kb on + strand, within MPMX20_02930 at 3062.138 kb on + strand, within MPMX20_02930 at 3062.138 kb on + strand, within MPMX20_02930 at 3062.138 kb on + strand, within MPMX20_02930 at 3062.141 kb on - strand, within MPMX20_02930 at 3062.141 kb on - strand, within MPMX20_02930 at 3062.141 kb on - strand, within MPMX20_02930 at 3062.179 kb on - strand, within MPMX20_02930 at 3062.182 kb on + strand, within MPMX20_02930 at 3062.183 kb on - strand, within MPMX20_02930 at 3062.190 kb on - strand, within MPMX20_02930 at 3062.191 kb on + strand, within MPMX20_02930 at 3062.211 kb on + strand, within MPMX20_02930 at 3062.233 kb on + strand, within MPMX20_02930 at 3062.253 kb on - strand, within MPMX20_02930 at 3062.385 kb on + strand at 3062.404 kb on - strand at 3062.425 kb on + strand at 3062.485 kb on + strand, within MPMX20_02931 at 3062.502 kb on + strand, within MPMX20_02931 at 3062.510 kb on + strand, within MPMX20_02931 at 3062.510 kb on + strand, within MPMX20_02931 at 3062.510 kb on + strand, within MPMX20_02931 at 3062.517 kb on + strand, within MPMX20_02931 at 3062.518 kb on - strand, within MPMX20_02931 at 3062.518 kb on - strand, within MPMX20_02931 at 3062.518 kb on - strand, within MPMX20_02931 at 3062.518 kb on - strand, within MPMX20_02931 at 3062.519 kb on + strand, within MPMX20_02931 at 3062.525 kb on - strand, within MPMX20_02931 at 3062.527 kb on - strand, within MPMX20_02931 at 3062.529 kb on + strand, within MPMX20_02931 at 3062.529 kb on + strand, within MPMX20_02931 at 3062.529 kb on + strand, within MPMX20_02931 at 3062.529 kb on + strand, within MPMX20_02931 at 3062.537 kb on - strand, within MPMX20_02931 at 3062.539 kb on + strand, within MPMX20_02931 at 3062.543 kb on + strand, within MPMX20_02931 at 3062.565 kb on + strand, within MPMX20_02931 at 3062.579 kb on + strand, within MPMX20_02931 at 3062.745 kb on + strand at 3062.745 kb on + strand at 3062.753 kb on - strand at 3062.753 kb on - strand at 3062.758 kb on - strand at 3062.772 kb on - strand at 3062.781 kb on + strand at 3062.859 kb on - strand, within MPMX20_02932 at 3062.859 kb on - strand, within MPMX20_02932 at 3062.866 kb on + strand, within MPMX20_02932 at 3062.871 kb on - strand, within MPMX20_02932 at 3062.973 kb on + strand, within MPMX20_02932 at 3062.988 kb on + strand, within MPMX20_02932 at 3062.988 kb on + strand, within MPMX20_02932 at 3062.988 kb on + strand, within MPMX20_02932 at 3062.995 kb on - strand, within MPMX20_02932 at 3062.996 kb on - strand, within MPMX20_02932 at 3062.996 kb on - strand, within MPMX20_02932 at 3062.996 kb on - strand, within MPMX20_02932 at 3062.996 kb on - strand, within MPMX20_02932 at 3063.205 kb on + strand, within MPMX20_02933 at 3063.213 kb on - strand, within MPMX20_02933 at 3063.213 kb on - strand, within MPMX20_02933 at 3063.222 kb on + strand, within MPMX20_02933 at 3063.294 kb on + strand, within MPMX20_02933 at 3063.295 kb on + strand, within MPMX20_02933 at 3063.295 kb on + strand, within MPMX20_02933 at 3063.296 kb on - strand, within MPMX20_02933
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Chryseobacterium proteolyticum TBS_027 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,061,108 - -1.5 3,061,194 + -1.5 3,061,200 + -2.2 3,061,223 - -1.6 3,061,233 - -1.0 3,061,318 + MPMX20_02926 0.19 -1.6 3,061,323 + MPMX20_02926 0.21 -1.8 3,061,371 - MPMX20_02926 0.43 -1.8 3,061,428 + MPMX20_02926 0.69 -1.3 3,061,436 + MPMX20_02926 0.73 -1.6 3,061,446 - MPMX20_02926 0.77 -1.5 3,061,485 - -1.1 3,061,523 + -1.2 3,061,539 - MPMX20_02927 0.15 -1.6 3,061,544 + MPMX20_02927 0.16 -2.0 3,061,544 + MPMX20_02927 0.16 -1.9 3,061,574 - MPMX20_02927 0.26 -1.5 3,061,574 - MPMX20_02927 0.26 +0.4 3,061,605 - MPMX20_02927 0.36 -2.1 3,061,636 - MPMX20_02927 0.45 -1.4 3,061,665 + MPMX20_02927 0.54 -1.5 3,061,667 - MPMX20_02927 0.55 -1.6 3,061,803 + -2.6 3,061,813 + -1.5 3,061,816 - -1.3 3,061,856 - MPMX20_02928 0.26 -2.0 3,061,858 + MPMX20_02928 0.27 -1.4 3,061,921 - MPMX20_02928 0.60 -1.0 3,061,976 - MPMX20_02928 0.89 -1.0 3,061,992 + -1.5 3,061,995 - -1.9 3,062,057 - MPMX20_02929 0.68 -1.8 3,062,071 + MPMX20_02929 0.83 -1.9 3,062,079 - -1.3 3,062,080 + -2.0 3,062,114 - MPMX20_02930 0.11 -0.6 3,062,126 - MPMX20_02930 0.17 -1.6 3,062,128 + MPMX20_02930 0.18 -1.7 3,062,138 + MPMX20_02930 0.22 -2.4 3,062,138 + MPMX20_02930 0.22 -1.8 3,062,138 + MPMX20_02930 0.22 -0.9 3,062,141 - MPMX20_02930 0.24 -1.7 3,062,141 - MPMX20_02930 0.24 -1.8 3,062,141 - MPMX20_02930 0.24 -1.2 3,062,179 - MPMX20_02930 0.41 -1.4 3,062,182 + MPMX20_02930 0.42 -1.7 3,062,183 - MPMX20_02930 0.43 -1.9 3,062,190 - MPMX20_02930 0.46 -1.3 3,062,191 + MPMX20_02930 0.47 -1.9 3,062,211 + MPMX20_02930 0.56 -2.0 3,062,233 + MPMX20_02930 0.66 -2.0 3,062,253 - MPMX20_02930 0.75 -0.9 3,062,385 + -1.5 3,062,404 - -1.8 3,062,425 + -2.0 3,062,485 + MPMX20_02931 0.15 -2.4 3,062,502 + MPMX20_02931 0.21 -1.8 3,062,510 + MPMX20_02931 0.24 -2.1 3,062,510 + MPMX20_02931 0.24 -1.7 3,062,510 + MPMX20_02931 0.24 -1.0 3,062,517 + MPMX20_02931 0.26 -1.3 3,062,518 - MPMX20_02931 0.27 -1.7 3,062,518 - MPMX20_02931 0.27 -1.6 3,062,518 - MPMX20_02931 0.27 -1.8 3,062,518 - MPMX20_02931 0.27 -1.8 3,062,519 + MPMX20_02931 0.27 -1.4 3,062,525 - MPMX20_02931 0.29 -2.0 3,062,527 - MPMX20_02931 0.30 -3.8 3,062,529 + MPMX20_02931 0.30 -1.4 3,062,529 + MPMX20_02931 0.30 -1.9 3,062,529 + MPMX20_02931 0.30 -2.0 3,062,529 + MPMX20_02931 0.30 -1.8 3,062,537 - MPMX20_02931 0.33 -1.6 3,062,539 + MPMX20_02931 0.34 -2.6 3,062,543 + MPMX20_02931 0.35 -1.6 3,062,565 + MPMX20_02931 0.43 -2.0 3,062,579 + MPMX20_02931 0.48 -1.4 3,062,745 + -2.5 3,062,745 + -1.1 3,062,753 - -1.6 3,062,753 - -1.3 3,062,758 - -1.3 3,062,772 - -1.5 3,062,781 + -0.1 3,062,859 - MPMX20_02932 0.30 -0.7 3,062,859 - MPMX20_02932 0.30 -0.1 3,062,866 + MPMX20_02932 0.33 -0.4 3,062,871 - MPMX20_02932 0.35 -1.1 3,062,973 + MPMX20_02932 0.77 -0.8 3,062,988 + MPMX20_02932 0.83 +0.0 3,062,988 + MPMX20_02932 0.83 -0.3 3,062,988 + MPMX20_02932 0.83 -0.6 3,062,995 - MPMX20_02932 0.86 -1.3 3,062,996 - MPMX20_02932 0.86 -0.8 3,062,996 - MPMX20_02932 0.86 -0.5 3,062,996 - MPMX20_02932 0.86 -2.3 3,062,996 - MPMX20_02932 0.86 -1.0 3,063,205 + MPMX20_02933 0.10 +1.5 3,063,213 - MPMX20_02933 0.11 -0.8 3,063,213 - MPMX20_02933 0.11 -0.7 3,063,222 + MPMX20_02933 0.11 -0.8 3,063,294 + MPMX20_02933 0.17 +0.0 3,063,295 + MPMX20_02933 0.17 -0.7 3,063,295 + MPMX20_02933 0.17 -1.0 3,063,296 - MPMX20_02933 0.17 -1.1
Or see this region's nucleotide sequence