Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02930

Experiment: LB agar plate coculture with Mixed culture; Chryseobacterium proteolyticum TBS_027 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02925 and MPMX20_02926 are separated by 40 nucleotidesMPMX20_02926 and MPMX20_02927 overlap by 4 nucleotidesMPMX20_02927 and MPMX20_02928 overlap by 4 nucleotidesMPMX20_02928 and MPMX20_02929 overlap by 4 nucleotidesMPMX20_02929 and MPMX20_02930 are separated by 2 nucleotidesMPMX20_02930 and MPMX20_02931 are separated by 135 nucleotidesMPMX20_02931 and MPMX20_02932 are separated by 59 nucleotidesMPMX20_02932 and MPMX20_02933 are separated by 45 nucleotides MPMX20_02925: MPMX20_02925 - hypothetical protein, at 3,059,275 to 3,061,236 _02925 MPMX20_02926: MPMX20_02926 - hypothetical protein, at 3,061,277 to 3,061,495 _02926 MPMX20_02927: MPMX20_02927 - hypothetical protein, at 3,061,492 to 3,061,809 _02927 MPMX20_02928: MPMX20_02928 - hypothetical protein, at 3,061,806 to 3,061,997 _02928 MPMX20_02929: MPMX20_02929 - hypothetical protein, at 3,061,994 to 3,062,086 _02929 MPMX20_02930: MPMX20_02930 - hypothetical protein, at 3,062,089 to 3,062,307 _02930 MPMX20_02931: MPMX20_02931 - hypothetical protein, at 3,062,443 to 3,062,724 _02931 MPMX20_02932: MPMX20_02932 - hypothetical protein, at 3,062,784 to 3,063,029 _02932 MPMX20_02933: MPMX20_02933 - Putative defective protein IntQ, at 3,063,075 to 3,064,370 _02933 Position (kb) 3062 3063Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3061.108 kb on - strandat 3061.194 kb on + strandat 3061.200 kb on + strandat 3061.223 kb on - strandat 3061.233 kb on - strandat 3061.318 kb on + strand, within MPMX20_02926at 3061.323 kb on + strand, within MPMX20_02926at 3061.371 kb on - strand, within MPMX20_02926at 3061.428 kb on + strand, within MPMX20_02926at 3061.436 kb on + strand, within MPMX20_02926at 3061.446 kb on - strand, within MPMX20_02926at 3061.485 kb on - strandat 3061.523 kb on + strandat 3061.539 kb on - strand, within MPMX20_02927at 3061.544 kb on + strand, within MPMX20_02927at 3061.544 kb on + strand, within MPMX20_02927at 3061.574 kb on - strand, within MPMX20_02927at 3061.574 kb on - strand, within MPMX20_02927at 3061.605 kb on - strand, within MPMX20_02927at 3061.636 kb on - strand, within MPMX20_02927at 3061.665 kb on + strand, within MPMX20_02927at 3061.667 kb on - strand, within MPMX20_02927at 3061.803 kb on + strandat 3061.813 kb on + strandat 3061.816 kb on - strandat 3061.856 kb on - strand, within MPMX20_02928at 3061.858 kb on + strand, within MPMX20_02928at 3061.921 kb on - strand, within MPMX20_02928at 3061.976 kb on - strand, within MPMX20_02928at 3061.992 kb on + strandat 3061.995 kb on - strandat 3062.057 kb on - strand, within MPMX20_02929at 3062.071 kb on + strand, within MPMX20_02929at 3062.079 kb on - strandat 3062.080 kb on + strandat 3062.114 kb on - strand, within MPMX20_02930at 3062.126 kb on - strand, within MPMX20_02930at 3062.128 kb on + strand, within MPMX20_02930at 3062.138 kb on + strand, within MPMX20_02930at 3062.138 kb on + strand, within MPMX20_02930at 3062.138 kb on + strand, within MPMX20_02930at 3062.141 kb on - strand, within MPMX20_02930at 3062.141 kb on - strand, within MPMX20_02930at 3062.141 kb on - strand, within MPMX20_02930at 3062.179 kb on - strand, within MPMX20_02930at 3062.182 kb on + strand, within MPMX20_02930at 3062.183 kb on - strand, within MPMX20_02930at 3062.190 kb on - strand, within MPMX20_02930at 3062.191 kb on + strand, within MPMX20_02930at 3062.211 kb on + strand, within MPMX20_02930at 3062.233 kb on + strand, within MPMX20_02930at 3062.253 kb on - strand, within MPMX20_02930at 3062.385 kb on + strandat 3062.404 kb on - strandat 3062.425 kb on + strandat 3062.485 kb on + strand, within MPMX20_02931at 3062.502 kb on + strand, within MPMX20_02931at 3062.510 kb on + strand, within MPMX20_02931at 3062.510 kb on + strand, within MPMX20_02931at 3062.510 kb on + strand, within MPMX20_02931at 3062.517 kb on + strand, within MPMX20_02931at 3062.518 kb on - strand, within MPMX20_02931at 3062.518 kb on - strand, within MPMX20_02931at 3062.518 kb on - strand, within MPMX20_02931at 3062.518 kb on - strand, within MPMX20_02931at 3062.519 kb on + strand, within MPMX20_02931at 3062.525 kb on - strand, within MPMX20_02931at 3062.527 kb on - strand, within MPMX20_02931at 3062.529 kb on + strand, within MPMX20_02931at 3062.529 kb on + strand, within MPMX20_02931at 3062.529 kb on + strand, within MPMX20_02931at 3062.529 kb on + strand, within MPMX20_02931at 3062.537 kb on - strand, within MPMX20_02931at 3062.539 kb on + strand, within MPMX20_02931at 3062.543 kb on + strand, within MPMX20_02931at 3062.565 kb on + strand, within MPMX20_02931at 3062.579 kb on + strand, within MPMX20_02931at 3062.745 kb on + strandat 3062.745 kb on + strandat 3062.753 kb on - strandat 3062.753 kb on - strandat 3062.758 kb on - strandat 3062.772 kb on - strandat 3062.781 kb on + strandat 3062.859 kb on - strand, within MPMX20_02932at 3062.859 kb on - strand, within MPMX20_02932at 3062.866 kb on + strand, within MPMX20_02932at 3062.871 kb on - strand, within MPMX20_02932at 3062.973 kb on + strand, within MPMX20_02932at 3062.988 kb on + strand, within MPMX20_02932at 3062.988 kb on + strand, within MPMX20_02932at 3062.988 kb on + strand, within MPMX20_02932at 3062.995 kb on - strand, within MPMX20_02932at 3062.996 kb on - strand, within MPMX20_02932at 3062.996 kb on - strand, within MPMX20_02932at 3062.996 kb on - strand, within MPMX20_02932at 3062.996 kb on - strand, within MPMX20_02932at 3063.205 kb on + strand, within MPMX20_02933at 3063.213 kb on - strand, within MPMX20_02933at 3063.213 kb on - strand, within MPMX20_02933at 3063.222 kb on + strand, within MPMX20_02933at 3063.294 kb on + strand, within MPMX20_02933at 3063.295 kb on + strand, within MPMX20_02933at 3063.295 kb on + strand, within MPMX20_02933at 3063.296 kb on - strand, within MPMX20_02933

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Chryseobacterium proteolyticum TBS_027 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
remove
3,061,108 - -1.5
3,061,194 + -1.5
3,061,200 + -2.2
3,061,223 - -1.6
3,061,233 - -1.0
3,061,318 + MPMX20_02926 0.19 -1.6
3,061,323 + MPMX20_02926 0.21 -1.8
3,061,371 - MPMX20_02926 0.43 -1.8
3,061,428 + MPMX20_02926 0.69 -1.3
3,061,436 + MPMX20_02926 0.73 -1.6
3,061,446 - MPMX20_02926 0.77 -1.5
3,061,485 - -1.1
3,061,523 + -1.2
3,061,539 - MPMX20_02927 0.15 -1.6
3,061,544 + MPMX20_02927 0.16 -2.0
3,061,544 + MPMX20_02927 0.16 -1.9
3,061,574 - MPMX20_02927 0.26 -1.5
3,061,574 - MPMX20_02927 0.26 +0.4
3,061,605 - MPMX20_02927 0.36 -2.1
3,061,636 - MPMX20_02927 0.45 -1.4
3,061,665 + MPMX20_02927 0.54 -1.5
3,061,667 - MPMX20_02927 0.55 -1.6
3,061,803 + -2.6
3,061,813 + -1.5
3,061,816 - -1.3
3,061,856 - MPMX20_02928 0.26 -2.0
3,061,858 + MPMX20_02928 0.27 -1.4
3,061,921 - MPMX20_02928 0.60 -1.0
3,061,976 - MPMX20_02928 0.89 -1.0
3,061,992 + -1.5
3,061,995 - -1.9
3,062,057 - MPMX20_02929 0.68 -1.8
3,062,071 + MPMX20_02929 0.83 -1.9
3,062,079 - -1.3
3,062,080 + -2.0
3,062,114 - MPMX20_02930 0.11 -0.6
3,062,126 - MPMX20_02930 0.17 -1.6
3,062,128 + MPMX20_02930 0.18 -1.7
3,062,138 + MPMX20_02930 0.22 -2.4
3,062,138 + MPMX20_02930 0.22 -1.8
3,062,138 + MPMX20_02930 0.22 -0.9
3,062,141 - MPMX20_02930 0.24 -1.7
3,062,141 - MPMX20_02930 0.24 -1.8
3,062,141 - MPMX20_02930 0.24 -1.2
3,062,179 - MPMX20_02930 0.41 -1.4
3,062,182 + MPMX20_02930 0.42 -1.7
3,062,183 - MPMX20_02930 0.43 -1.9
3,062,190 - MPMX20_02930 0.46 -1.3
3,062,191 + MPMX20_02930 0.47 -1.9
3,062,211 + MPMX20_02930 0.56 -2.0
3,062,233 + MPMX20_02930 0.66 -2.0
3,062,253 - MPMX20_02930 0.75 -0.9
3,062,385 + -1.5
3,062,404 - -1.8
3,062,425 + -2.0
3,062,485 + MPMX20_02931 0.15 -2.4
3,062,502 + MPMX20_02931 0.21 -1.8
3,062,510 + MPMX20_02931 0.24 -2.1
3,062,510 + MPMX20_02931 0.24 -1.7
3,062,510 + MPMX20_02931 0.24 -1.0
3,062,517 + MPMX20_02931 0.26 -1.3
3,062,518 - MPMX20_02931 0.27 -1.7
3,062,518 - MPMX20_02931 0.27 -1.6
3,062,518 - MPMX20_02931 0.27 -1.8
3,062,518 - MPMX20_02931 0.27 -1.8
3,062,519 + MPMX20_02931 0.27 -1.4
3,062,525 - MPMX20_02931 0.29 -2.0
3,062,527 - MPMX20_02931 0.30 -3.8
3,062,529 + MPMX20_02931 0.30 -1.4
3,062,529 + MPMX20_02931 0.30 -1.9
3,062,529 + MPMX20_02931 0.30 -2.0
3,062,529 + MPMX20_02931 0.30 -1.8
3,062,537 - MPMX20_02931 0.33 -1.6
3,062,539 + MPMX20_02931 0.34 -2.6
3,062,543 + MPMX20_02931 0.35 -1.6
3,062,565 + MPMX20_02931 0.43 -2.0
3,062,579 + MPMX20_02931 0.48 -1.4
3,062,745 + -2.5
3,062,745 + -1.1
3,062,753 - -1.6
3,062,753 - -1.3
3,062,758 - -1.3
3,062,772 - -1.5
3,062,781 + -0.1
3,062,859 - MPMX20_02932 0.30 -0.7
3,062,859 - MPMX20_02932 0.30 -0.1
3,062,866 + MPMX20_02932 0.33 -0.4
3,062,871 - MPMX20_02932 0.35 -1.1
3,062,973 + MPMX20_02932 0.77 -0.8
3,062,988 + MPMX20_02932 0.83 +0.0
3,062,988 + MPMX20_02932 0.83 -0.3
3,062,988 + MPMX20_02932 0.83 -0.6
3,062,995 - MPMX20_02932 0.86 -1.3
3,062,996 - MPMX20_02932 0.86 -0.8
3,062,996 - MPMX20_02932 0.86 -0.5
3,062,996 - MPMX20_02932 0.86 -2.3
3,062,996 - MPMX20_02932 0.86 -1.0
3,063,205 + MPMX20_02933 0.10 +1.5
3,063,213 - MPMX20_02933 0.11 -0.8
3,063,213 - MPMX20_02933 0.11 -0.7
3,063,222 + MPMX20_02933 0.11 -0.8
3,063,294 + MPMX20_02933 0.17 +0.0
3,063,295 + MPMX20_02933 0.17 -0.7
3,063,295 + MPMX20_02933 0.17 -1.0
3,063,296 - MPMX20_02933 0.17 -1.1

Or see this region's nucleotide sequence