Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10790

Experiment: Bas07

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10780 and ECOLIN_RS10785 are separated by 4 nucleotidesECOLIN_RS10785 and ECOLIN_RS10790 overlap by 4 nucleotidesECOLIN_RS10790 and ECOLIN_RS10795 are separated by 125 nucleotidesECOLIN_RS10795 and ECOLIN_RS10800 are separated by 2 nucleotides ECOLIN_RS10780: ECOLIN_RS10780 - chemotaxis protein CheA, at 2,098,976 to 2,100,940 _RS10780 ECOLIN_RS10785: ECOLIN_RS10785 - flagellar motor protein MotB, at 2,100,945 to 2,101,871 _RS10785 ECOLIN_RS10790: ECOLIN_RS10790 - flagellar motor stator protein MotA, at 2,101,868 to 2,102,755 _RS10790 ECOLIN_RS10795: ECOLIN_RS10795 - flagellar transcriptional regulator FlhC, at 2,102,881 to 2,103,459 _RS10795 ECOLIN_RS10800: ECOLIN_RS10800 - flagellar transcriptional regulator FlhD, at 2,103,462 to 2,103,812 _RS10800 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -1 0 1at 2100.927 kb on - strandat 2102.014 kb on + strand, within ECOLIN_RS10790at 2103.588 kb on - strand, within ECOLIN_RS10800

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas07
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2,100,927 - +0.3
2,102,014 + ECOLIN_RS10790 0.16 -0.0
2,103,588 - ECOLIN_RS10800 0.36 +1.5

Or see this region's nucleotide sequence