Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024960

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
5,420,702	-		TX73_024955	0.28	-1.4
5,420,735	-		TX73_024955	0.30	-2.3
5,420,784	+		TX73_024955	0.34	-1.4
5,420,823	-		TX73_024955	0.37	-1.3
5,420,854	+		TX73_024955	0.40	-1.7
5,420,911	-		TX73_024955	0.44	-1.3
5,420,917	+		TX73_024955	0.45	+0.1
5,420,925	-		TX73_024955	0.45	-1.5
5,420,949	-		TX73_024955	0.47	-0.7
5,420,967	-		TX73_024955	0.49	-0.5
5,420,969	-		TX73_024955	0.49	+0.0
5,420,969	-		TX73_024955	0.49	+0.7
5,420,977	+		TX73_024955	0.50	-1.8
5,421,010	+		TX73_024955	0.52	-1.9
5,421,019	+		TX73_024955	0.53	-0.0
5,421,019	+		TX73_024955	0.53	-1.6
5,421,021	+		TX73_024955	0.53	-2.7
5,421,027	-		TX73_024955	0.54	-2.2
5,421,027	-		TX73_024955	0.54	+1.2
5,421,029	-		TX73_024955	0.54	-0.8
5,421,042	-		TX73_024955	0.55	+1.0
5,421,047	-		TX73_024955	0.55	-2.6
5,421,049	+		TX73_024955	0.55	-1.5
5,421,052	-		TX73_024955	0.56	-0.9
5,421,052	-		TX73_024955	0.56	-0.5
5,421,064	+		TX73_024955	0.57	+0.4
5,421,064	+		TX73_024955	0.57	-0.2
5,421,072	-		TX73_024955	0.57	-1.3
5,421,072	-		TX73_024955	0.57	+1.1
5,421,091	-		TX73_024955	0.59	+1.0
5,421,106	-		TX73_024955	0.60	+0.3
5,421,109	-		TX73_024955	0.60	+0.4
5,421,119	+		TX73_024955	0.61	-0.9
5,421,138	+		TX73_024955	0.62	+0.6
5,421,148	+		TX73_024955	0.63	-3.8
5,421,168	-		TX73_024955	0.65	-0.8
5,421,173	+		TX73_024955	0.65	-0.3
5,421,180	-		TX73_024955	0.66	-1.1
5,421,225	+		TX73_024955	0.69	-0.1
5,421,227	+		TX73_024955	0.70	-0.2
5,421,238	+		TX73_024955	0.71	-0.3
5,421,246	-		TX73_024955	0.71	-2.5
5,421,265	+		TX73_024955	0.73	-2.3
5,421,273	-		TX73_024955	0.73	-2.2
5,421,273	-		TX73_024955	0.73	-0.7
5,421,278	-		TX73_024955	0.74	+0.5
5,421,288	+		TX73_024955	0.75	+1.0
5,421,302	-		TX73_024955	0.76	-0.4
5,421,304	+		TX73_024955	0.76	-1.3
5,421,321	-		TX73_024955	0.77	+0.4
5,421,332	+		TX73_024955	0.78	-3.5
5,421,345	-		TX73_024955	0.79	-3.3
5,421,357	-		TX73_024955	0.80	-1.1
5,421,363	+		TX73_024955	0.81	+0.0
5,421,364	+		TX73_024955	0.81	-2.3
5,421,364	+		TX73_024955	0.81	-1.3
5,421,364	+		TX73_024955	0.81	+0.3
5,421,387	+		TX73_024955	0.82	-0.3
5,421,412	-		TX73_024955	0.84	-0.8
5,421,419	+		TX73_024955	0.85	-0.2
5,421,419	-		TX73_024955	0.85	+2.5
5,421,421	+		TX73_024955	0.85	+0.8
5,421,439	+		TX73_024955	0.87	+1.2
5,421,460	-		TX73_024955	0.88	-2.6
5,421,472	+		TX73_024955	0.89	+0.6
5,421,472	+		TX73_024955	0.89	-0.5
5,421,480	-		TX73_024955	0.90	-3.0
5,421,516	+				-0.6
5,421,566	-				+0.1
5,421,566	-				+0.2
5,421,582	+				+0.4
5,421,619	+				-0.7
5,421,636	-				-0.9
5,421,658	+				-1.5
5,421,658	+				+1.4
5,421,658	+				-0.5
5,421,658	+				-0.3
5,421,658	+				-0.6
5,421,658	+				-1.8
5,421,663	+				+1.4
5,421,664	-				-1.0
5,421,664	-				-2.3
5,421,666	-				-1.1
5,421,666	-				-1.4
5,421,666	-				+0.3
5,421,666	-				-2.9
5,421,671	-				+0.4
5,421,677	-				-0.1
5,421,738	+				+0.9
5,421,743	+				-0.6
5,421,751	-				+0.6
5,421,752	-				-0.9
5,421,772	+		TX73_024960	0.13	-0.3
5,421,772	+		TX73_024960	0.13	-1.2
5,421,778	+		TX73_024960	0.14	+0.5
5,421,782	+		TX73_024960	0.14	-0.5
5,421,782	+		TX73_024960	0.14	-1.7
5,421,782	+		TX73_024960	0.14	-0.5
5,421,807	-		TX73_024960	0.18	+0.3
5,421,818	-		TX73_024960	0.19	+0.2
5,421,818	-		TX73_024960	0.19	+1.0
5,421,860	+		TX73_024960	0.25	+1.2
5,421,860	+		TX73_024960	0.25	-1.1
5,421,860	+		TX73_024960	0.25	-0.6
5,421,860	+		TX73_024960	0.25	-0.4
5,421,860	+		TX73_024960	0.25	+1.8
5,421,860	+		TX73_024960	0.25	-0.7
5,421,867	+		TX73_024960	0.26	-0.6
5,421,867	+		TX73_024960	0.26	-1.1
5,421,868	-		TX73_024960	0.26	-1.3
5,421,873	-		TX73_024960	0.27	-0.1
5,421,882	+		TX73_024960	0.28	-0.3
5,421,882	+		TX73_024960	0.28	+0.6
5,421,885	-		TX73_024960	0.28	-0.3
5,421,907	+		TX73_024960	0.32	-0.0
5,421,916	+		TX73_024960	0.33	-0.6
5,421,916	+		TX73_024960	0.33	-2.0
5,421,916	+		TX73_024960	0.33	+0.1
5,421,921	+		TX73_024960	0.33	-0.5
5,421,924	-		TX73_024960	0.34	+0.5
5,421,929	-		TX73_024960	0.35	-1.7
5,421,937	-		TX73_024960	0.36	+0.4
5,421,956	+		TX73_024960	0.38	-1.4
5,421,966	+		TX73_024960	0.40	+0.4
5,421,975	+		TX73_024960	0.41	-0.1
5,421,982	+		TX73_024960	0.42	+0.5
5,422,008	-		TX73_024960	0.46	-1.0
5,422,020	+		TX73_024960	0.47	-1.3
5,422,029	-		TX73_024960	0.49	+1.7
5,422,037	+		TX73_024960	0.50	+0.7
5,422,043	+		TX73_024960	0.50	+1.6
5,422,055	+		TX73_024960	0.52	+0.9
5,422,059	-		TX73_024960	0.53	+0.4
5,422,063	-		TX73_024960	0.53	-0.7
5,422,063	-		TX73_024960	0.53	-0.8
5,422,074	+		TX73_024960	0.55	+0.3
5,422,129	-		TX73_024960	0.62	+0.3
5,422,129	-		TX73_024960	0.62	-0.9
5,422,129	-		TX73_024960	0.62	-0.7
5,422,136	+		TX73_024960	0.63	-1.1
5,422,149	+		TX73_024960	0.65	+0.6
5,422,150	+		TX73_024960	0.65	+2.1
5,422,152	-		TX73_024960	0.66	+0.3
5,422,158	+		TX73_024960	0.67	+0.9
5,422,158	-		TX73_024960	0.67	-1.6
5,422,158	-		TX73_024960	0.67	+0.1
5,422,158	-		TX73_024960	0.67	+0.4
5,422,172	-		TX73_024960	0.68	+2.1
5,422,173	-		TX73_024960	0.69	-0.3
5,422,174	-		TX73_024960	0.69	-0.3
5,422,194	+		TX73_024960	0.72	+0.3
5,422,224	+		TX73_024960	0.76	+0.9
5,422,224	+		TX73_024960	0.76	+0.1
5,422,227	-		TX73_024960	0.76	+0.6
5,422,229	+		TX73_024960	0.76	-1.4
5,422,232	-		TX73_024960	0.77	-0.4
5,422,232	-		TX73_024960	0.77	-0.2
5,422,237	-		TX73_024960	0.78	-1.0
5,422,254	+		TX73_024960	0.80	-0.3
5,422,273	-		TX73_024960	0.83	+0.4
5,422,278	+		TX73_024960	0.83	-0.4
5,422,279	+		TX73_024960	0.83	-1.2
5,422,284	+		TX73_024960	0.84	-1.1
5,422,284	+		TX73_024960	0.84	-0.3
5,422,284	+		TX73_024960	0.84	+0.6
5,422,292	-		TX73_024960	0.85	-1.4
5,422,292	-		TX73_024960	0.85	+1.0
5,422,292	-		TX73_024960	0.85	-0.3
5,422,292	-		TX73_024960	0.85	+3.6
5,422,292	-		TX73_024960	0.85	-1.0
5,422,292	-		TX73_024960	0.85	-1.6
5,422,341	+				-1.2
5,422,351	-				+1.5
5,422,356	-				-0.8
5,422,357	-				-0.2
5,422,430	+				-0.7
5,422,433	-				-0.3
5,422,433	-				-0.9
5,422,438	-				+1.7
5,422,438	-				-0.0
5,422,438	-				-2.2
5,422,444	+				-1.7
5,422,444	+				+1.7
5,422,462	-				-2.0
5,422,462	-				+0.6
5,422,469	-				-0.6
5,422,488	+				-2.1
5,422,539	-				-1.1
5,422,539	-				+1.3
5,422,556	-				-0.8
5,422,592	+				-1.0
5,422,668	+				+1.5
5,422,668	+				+0.7
5,422,676	-				-1.2
5,422,682	+				+1.1
5,422,687	+				+0.8
5,422,707	-				+0.5
5,422,707	-				-1.1
5,422,727	-				-0.7
5,422,771	-				-0.7
5,422,793	-				+0.0
5,422,812	+				+0.1
5,422,812	+				+1.1
5,422,819	+				-0.2
5,422,827	-				-1.6
5,422,828	+				+0.2
5,422,835	+				+2.4
5,422,835	+				-0.8
5,422,838	-				-1.6
5,422,838	-				-1.2
5,422,838	-				-0.4
5,422,844	-				+0.3
5,422,845	+				-1.6
5,422,853	-				-2.7
5,422,853	-				-0.9
5,422,874	-				-0.5
5,422,874	-				-0.1
5,422,874	-				-1.0
5,422,879	-				-0.5
5,422,891	+				+0.2
5,422,891	+				-1.9
5,422,891	+				-2.7
5,422,891	+				-0.5
5,422,899	-				-0.4
5,422,901	+				+0.1
5,422,904	+				+0.2
5,422,904	+				-2.7
5,422,906	+				-0.7
5,422,906	+				-1.4
5,422,921	+				+0.0
5,422,931	+				-0.8
5,422,931	-				+0.1
5,422,950	+				-0.3
5,422,959	+				-0.8
5,422,959	+				+0.4
5,422,967	-				-2.4
5,422,967	-				-0.3
5,422,990	-				-1.8
5,422,994	+				-2.3
5,423,002	-				+0.6
5,423,002	-				+1.2
5,423,002	-				-0.4
5,423,002	-				+1.8
5,423,009	-				-0.1
5,423,015	-				+1.8
5,423,016	+				+0.9
5,423,024	-				-0.5
5,423,028	+				-1.3
5,423,028	+				-1.0
5,423,035	+				-0.9
5,423,035	+				-2.1
5,423,035	+				-3.1
5,423,036	-				-0.8
5,423,036	-				-1.0
5,423,036	-				-1.7
5,423,036	-				-0.1
5,423,043	-				+0.4
5,423,043	-				-0.7
5,423,058	+		TX73_024965	0.10	-1.9
5,423,058	+		TX73_024965	0.10	-0.3
5,423,066	-		TX73_024965	0.11	-2.0
5,423,066	-		TX73_024965	0.11	+0.9
5,423,066	-		TX73_024965	0.11	-0.7
5,423,067	-		TX73_024965	0.11	-0.7
5,423,068	+		TX73_024965	0.11	-0.6
5,423,068	+		TX73_024965	0.11	+0.3
5,423,073	+		TX73_024965	0.11	-0.8
5,423,073	+		TX73_024965	0.11	-3.1
5,423,074	-		TX73_024965	0.11	-1.0
5,423,076	-		TX73_024965	0.11	-0.8
5,423,076	-		TX73_024965	0.11	+0.3
5,423,081	-		TX73_024965	0.11	-0.2
5,423,081	-		TX73_024965	0.11	+0.4
5,423,081	-		TX73_024965	0.11	-0.3
5,423,095	+		TX73_024965	0.12	+0.9
5,423,095	+		TX73_024965	0.12	-0.6
5,423,098	+		TX73_024965	0.12	-0.8
5,423,098	+		TX73_024965	0.12	+0.4
5,423,103	+		TX73_024965	0.12	-1.1
5,423,103	-		TX73_024965	0.12	-0.0
5,423,106	-		TX73_024965	0.13	+0.8
5,423,106	-		TX73_024965	0.13	-0.8
5,423,108	-		TX73_024965	0.13	+0.3
5,423,110	+		TX73_024965	0.13	-0.4
5,423,113	-		TX73_024965	0.13	-2.0
5,423,115	+		TX73_024965	0.13	-2.1
5,423,118	-		TX73_024965	0.13	-0.4
5,423,127	+		TX73_024965	0.14	-0.1
5,423,154	-		TX73_024965	0.15	-2.8
5,423,177	-		TX73_024965	0.16	-0.7
5,423,179	-		TX73_024965	0.16	-0.5
5,423,186	+		TX73_024965	0.16	-3.1
5,423,204	-		TX73_024965	0.17	+3.9
5,423,224	+		TX73_024965	0.18	-0.4
5,423,227	-		TX73_024965	0.18	-0.6
5,423,241	-		TX73_024965	0.19	+1.1
5,423,242	+		TX73_024965	0.19	-0.3
5,423,242	-		TX73_024965	0.19	+0.3
5,423,244	+		TX73_024965	0.19	-0.5
5,423,244	+		TX73_024965	0.19	-2.3
5,423,252	-		TX73_024965	0.20	-0.2
5,423,255	-		TX73_024965	0.20	+2.1
5,423,270	+		TX73_024965	0.20	-2.8
5,423,275	+		TX73_024965	0.21	+1.7
5,423,278	-		TX73_024965	0.21	-0.1
5,423,282	-		TX73_024965	0.21	+0.4
5,423,305	+		TX73_024965	0.22	-1.6
5,423,305	+		TX73_024965	0.22	-3.2
5,423,313	-		TX73_024965	0.22	-0.1
5,423,313	-		TX73_024965	0.22	-1.4
5,423,313	-		TX73_024965	0.22	-1.3
5,423,315	+		TX73_024965	0.22	+0.6
5,423,315	-		TX73_024965	0.22	-1.3
5,423,315	-		TX73_024965	0.22	-2.7
5,423,345	-		TX73_024965	0.24	+0.4
5,423,357	-		TX73_024965	0.24	-1.1
5,423,357	-		TX73_024965	0.24	+1.6
5,423,357	-		TX73_024965	0.24	+0.5
5,423,358	-		TX73_024965	0.25	+0.7
5,423,382	-		TX73_024965	0.26	-0.2
5,423,387	+		TX73_024965	0.26	+1.0