Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024900

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
5,408,163	+		TX73_024895	0.45	-2.3
5,408,163	+		TX73_024895	0.45	-2.5
5,408,166	-		TX73_024895	0.45	-1.0
5,408,166	-		TX73_024895	0.45	+1.6
5,408,168	+		TX73_024895	0.45	+1.3
5,408,168	+		TX73_024895	0.45	-2.7
5,408,168	+		TX73_024895	0.45	-0.8
5,408,168	+		TX73_024895	0.45	+0.0
5,408,168	+		TX73_024895	0.45	-0.1
5,408,176	-		TX73_024895	0.46	+1.7
5,408,176	-		TX73_024895	0.46	-0.5
5,408,176	-		TX73_024895	0.46	-2.5
5,408,176	-		TX73_024895	0.46	-1.4
5,408,176	-		TX73_024895	0.46	+5.2
5,408,176	-		TX73_024895	0.46	-1.9
5,408,185	-		TX73_024895	0.46	+0.3
5,408,210	-		TX73_024895	0.48	-1.2
5,408,212	+		TX73_024895	0.48	-1.2
5,408,212	+		TX73_024895	0.48	+0.3
5,408,212	+		TX73_024895	0.48	+0.9
5,408,220	-		TX73_024895	0.48	+2.0
5,408,220	-		TX73_024895	0.48	-0.3
5,408,226	-		TX73_024895	0.49	-0.8
5,408,231	+		TX73_024895	0.49	+3.5
5,408,231	+		TX73_024895	0.49	+1.6
5,408,241	-		TX73_024895	0.49	-1.2
5,408,241	-		TX73_024895	0.49	-0.9
5,408,241	-		TX73_024895	0.49	-0.5
5,408,323	-		TX73_024895	0.54	+1.2
5,408,325	-		TX73_024895	0.54	-2.5
5,408,331	-		TX73_024895	0.55	-2.1
5,408,346	+		TX73_024895	0.55	-2.0
5,408,351	+		TX73_024895	0.56	-1.1
5,408,354	-		TX73_024895	0.56	+3.3
5,408,371	+		TX73_024895	0.57	+1.0
5,408,372	+		TX73_024895	0.57	+0.5
5,408,379	-		TX73_024895	0.57	+1.4
5,408,411	-		TX73_024895	0.59	+0.0
5,408,418	+		TX73_024895	0.60	-2.4
5,408,443	+		TX73_024895	0.61	+1.7
5,408,451	-		TX73_024895	0.61	-2.3
5,408,451	-		TX73_024895	0.61	-0.2
5,408,481	+		TX73_024895	0.63	-1.9
5,408,486	+		TX73_024895	0.63	-0.2
5,408,499	+		TX73_024895	0.64	+0.3
5,408,516	-		TX73_024895	0.65	-0.3
5,408,523	+		TX73_024895	0.66	-1.5
5,408,722	-		TX73_024895	0.77	-0.4
5,408,743	+		TX73_024895	0.78	-1.9
5,408,748	+		TX73_024895	0.79	+0.0
5,408,750	+		TX73_024895	0.79	+2.1
5,408,768	-		TX73_024895	0.80	+1.3
5,408,770	+		TX73_024895	0.80	+1.3
5,408,770	+		TX73_024895	0.80	-1.0
5,408,775	+		TX73_024895	0.80	+1.8
5,408,795	+		TX73_024895	0.81	-2.2
5,408,822	+		TX73_024895	0.83	-0.0
5,408,863	-		TX73_024895	0.85	+0.6
5,408,868	-		TX73_024895	0.85	+0.6
5,408,882	+		TX73_024895	0.86	-1.6
5,408,882	+		TX73_024895	0.86	+0.2
5,408,882	+		TX73_024895	0.86	-0.8
5,408,883	+		TX73_024895	0.86	-0.9
5,408,895	-		TX73_024895	0.87	+0.5
5,408,897	+		TX73_024895	0.87	+0.2
5,408,903	-		TX73_024895	0.87	-0.2
5,408,917	+		TX73_024895	0.88	-2.7
5,408,925	-		TX73_024895	0.89	-0.6
5,408,941	+		TX73_024895	0.90	-1.2
5,408,958	-				+0.9
5,408,964	+				+0.2
5,408,972	-				-0.5
5,408,997	+				-0.8
5,409,040	-				-0.5
5,409,046	+				-0.8
5,409,061	+				-0.8
5,409,071	+				-2.0
5,409,074	-				+0.2
5,409,074	-				-0.9
5,409,076	+				-2.5
5,409,077	+				+1.2
5,409,079	-				+0.1
5,409,079	-				+0.8
5,409,085	-				-1.9
5,409,090	+				+1.0
5,409,091	-				+0.2
5,409,098	-				-1.7
5,409,157	+				-1.6
5,409,165	-				+0.5
5,409,185	+				-0.9
5,409,200	+		TX73_024900	0.11	-1.2
5,409,201	-		TX73_024900	0.11	+0.5
5,409,206	+		TX73_024900	0.12	-0.4
5,409,206	+		TX73_024900	0.12	-0.5
5,409,212	+		TX73_024900	0.13	+1.6
5,409,219	-		TX73_024900	0.14	-0.6
5,409,224	-		TX73_024900	0.14	-1.6
5,409,227	+		TX73_024900	0.15	-2.3
5,409,250	+		TX73_024900	0.18	-0.4
5,409,279	-		TX73_024900	0.22	-0.2
5,409,280	+		TX73_024900	0.22	+0.3
5,409,283	-		TX73_024900	0.22	+0.7
5,409,289	-		TX73_024900	0.23	+0.4
5,409,309	+		TX73_024900	0.26	+0.3
5,409,324	+		TX73_024900	0.28	+0.3
5,409,324	+		TX73_024900	0.28	+1.9
5,409,344	-		TX73_024900	0.30	+0.8
5,409,350	-		TX73_024900	0.31	-2.0
5,409,395	+		TX73_024900	0.37	-1.1
5,409,424	+		TX73_024900	0.41	-0.0
5,409,424	+		TX73_024900	0.41	+0.5
5,409,431	+		TX73_024900	0.42	-1.1
5,409,432	-		TX73_024900	0.42	+1.0
5,409,446	+		TX73_024900	0.44	-0.5
5,409,469	+		TX73_024900	0.47	+1.5
5,409,477	-		TX73_024900	0.48	-0.5
5,409,510	-		TX73_024900	0.53	-1.1
5,409,541	+		TX73_024900	0.57	-0.3
5,409,567	+		TX73_024900	0.61	-0.2
5,409,589	-		TX73_024900	0.64	-0.3
5,409,625	-		TX73_024900	0.68	-1.1
5,409,642	+		TX73_024900	0.71	+0.9
5,409,642	+		TX73_024900	0.71	-1.1
5,409,650	-		TX73_024900	0.72	+1.0
5,409,724	+		TX73_024900	0.82	+1.2
5,409,724	+		TX73_024900	0.82	-0.6
5,409,724	+		TX73_024900	0.82	-0.2
5,409,724	+		TX73_024900	0.82	-1.6
5,409,726	-		TX73_024900	0.82	-0.3
5,409,737	+		TX73_024900	0.84	-1.0
5,409,762	-		TX73_024900	0.87	-0.0
5,409,765	+		TX73_024900	0.87	-0.4
5,409,785	+				-1.5
5,409,793	-				-1.9
5,409,852	+				-0.7
5,409,852	+				-0.9
5,409,852	+				+2.1
5,409,860	-				-1.3
5,409,860	-				-0.5
5,409,898	-				+0.7
5,410,008	+				+1.0
5,410,016	-				+0.1
5,410,040	+				-0.4
5,410,043	-				+3.1
5,410,045	+				-0.7
5,410,053	-				-1.1
5,410,066	-				-0.6
5,410,086	-				-1.1
5,410,130	+		TX73_024905	0.11	+1.3
5,410,130	+		TX73_024905	0.11	-0.3
5,410,138	-		TX73_024905	0.12	+0.2
5,410,138	-		TX73_024905	0.12	+0.9
5,410,138	-		TX73_024905	0.12	+0.6
5,410,143	+		TX73_024905	0.13	-3.1
5,410,152	+		TX73_024905	0.15	-1.1
5,410,174	-		TX73_024905	0.18	-0.5
5,410,209	+		TX73_024905	0.24	-1.4
5,410,231	+		TX73_024905	0.27	+2.5
5,410,239	-		TX73_024905	0.29	-1.5
5,410,239	-		TX73_024905	0.29	-2.0
5,410,247	+		TX73_024905	0.30	-0.5
5,410,255	-		TX73_024905	0.31	+0.4
5,410,290	-		TX73_024905	0.37	-1.6
5,410,300	-		TX73_024905	0.39	+0.8
5,410,315	+		TX73_024905	0.41	+1.2
5,410,321	+		TX73_024905	0.42	-2.1
5,410,321	-		TX73_024905	0.42	-1.8
5,410,328	-		TX73_024905	0.43	-0.2
5,410,329	-		TX73_024905	0.43	-0.7
5,410,329	-		TX73_024905	0.43	-0.5
5,410,331	+		TX73_024905	0.44	-2.3
5,410,350	+		TX73_024905	0.47	+0.2
5,410,350	+		TX73_024905	0.47	-1.2
5,410,350	+		TX73_024905	0.47	-0.2
5,410,350	+		TX73_024905	0.47	-0.8
5,410,358	-		TX73_024905	0.48	-0.1
5,410,358	-		TX73_024905	0.48	-1.0
5,410,367	+		TX73_024905	0.50	-0.8
5,410,367	+		TX73_024905	0.50	-0.2
5,410,427	+		TX73_024905	0.59	+1.4
5,410,447	+		TX73_024905	0.63	-0.3
5,410,447	+		TX73_024905	0.63	-0.6
5,410,455	-		TX73_024905	0.64	+1.1
5,410,477	-		TX73_024905	0.68	+0.1
5,410,492	+		TX73_024905	0.70	-1.4
5,410,568	-		TX73_024905	0.83	+0.7
5,410,571	+		TX73_024905	0.83	-1.5
5,410,582	+		TX73_024905	0.85	-1.5
5,410,582	+		TX73_024905	0.85	-1.4
5,410,587	+		TX73_024905	0.86	-1.0
5,410,590	-		TX73_024905	0.86	+0.8
5,410,590	-		TX73_024905	0.86	-2.1
5,410,597	-		TX73_024905	0.87	-1.8
5,410,599	+		TX73_024905	0.88	+1.6
5,410,608	+		TX73_024905	0.89	-1.0
5,410,616	+				-1.7
5,410,617	-				-1.1
5,410,624	-				-2.1
5,410,654	+				+0.2
5,410,654	+				+0.4
5,410,662	-				-1.3
5,410,662	-				+1.2
5,410,669	+				-1.4
5,410,691	+				-0.0
5,410,711	+				-0.3
5,410,719	+				+0.1
5,410,727	-				-0.1
5,410,728	+				-0.8
5,410,729	+				-0.4
5,410,729	+				-1.7
5,410,729	+				+0.9
5,410,729	+				-2.7
5,410,737	-				+0.8
5,410,737	-				+0.3
5,410,773	-				-0.2
5,410,777	+				+0.2
5,410,780	-				+1.3
5,410,845	+				-0.4
5,410,850	+				+0.5