Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023645

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
5,129,394	-				+1.3
5,129,396	+				-0.4
5,129,406	-				-1.4
5,129,434	+				+1.2
5,129,440	-				-0.8
5,129,442	+				-1.1
5,129,442	+				-2.4
5,129,445	-				+0.6
5,129,450	-				-2.5
5,129,487	+				-2.0
5,129,495	-				-0.7
5,129,577	+				+1.2
5,129,585	+				-0.7
5,129,620	-				+0.5
5,129,627	+				+0.2
5,129,635	-				-0.0
5,129,635	-				-0.9
5,129,654	-				+0.2
5,129,669	-				-0.5
5,129,685	+				+1.4
5,129,695	+				+0.2
5,129,701	+				-1.3
5,129,707	+				-3.0
5,129,715	-				-1.1
5,129,787	+				+0.7
5,129,793	+				-1.8
5,129,813	+				-2.6
5,129,840	-				+1.1
5,129,850	+				-2.8
5,129,858	-		TX73_023640	0.12	-0.1
5,129,895	-		TX73_023640	0.21	+0.9
5,129,898	+		TX73_023640	0.22	-0.9
5,129,901	-		TX73_023640	0.23	-0.2
5,129,946	+		TX73_023640	0.34	-0.1
5,129,946	+		TX73_023640	0.34	-2.0
5,129,973	+		TX73_023640	0.41	+0.7
5,129,988	+		TX73_023640	0.45	+1.5
5,130,022	+		TX73_023640	0.54	-1.0
5,130,041	+		TX73_023640	0.59	-0.1
5,130,043	+		TX73_023640	0.59	+2.3
5,130,043	+		TX73_023640	0.59	+2.4
5,130,043	+		TX73_023640	0.59	+2.4
5,130,051	-		TX73_023640	0.61	+0.1
5,130,051	-		TX73_023640	0.61	-0.2
5,130,051	-		TX73_023640	0.61	+0.3
5,130,066	-		TX73_023640	0.65	-2.6
5,130,069	+		TX73_023640	0.66	+1.0
5,130,069	+		TX73_023640	0.66	+1.5
5,130,069	+		TX73_023640	0.66	+0.6
5,130,069	+		TX73_023640	0.66	-1.6
5,130,075	-		TX73_023640	0.67	-0.2
5,130,122	+		TX73_023640	0.79	-2.1
5,130,221	-				+1.1
5,130,236	-				+0.6
5,130,297	+				+1.1
5,130,297	+				-0.3
5,130,304	-				-2.3
5,130,319	+				-2.0
5,130,321	+				-1.4
5,130,334	-				-1.2
5,130,336	+				-2.7
5,130,354	-				+0.1
5,130,378	-				-0.9
5,130,407	-				+0.8
5,130,414	+				+2.7
5,130,414	+				-0.9
5,130,422	-				-0.1
5,130,422	-				-0.3
5,130,445	+				+0.2
5,130,445	+				+1.2
5,130,445	+				+0.4
5,130,458	-		TX73_023645	0.10	+0.3
5,130,458	-		TX73_023645	0.10	+0.7
5,130,458	-		TX73_023645	0.10	+0.7
5,130,512	-		TX73_023645	0.14	+1.5
5,130,520	+		TX73_023645	0.15	-2.9
5,130,543	-		TX73_023645	0.17	-1.9
5,130,548	-		TX73_023645	0.17	+0.5
5,130,548	-		TX73_023645	0.17	+1.0
5,130,585	+		TX73_023645	0.20	+1.1
5,130,594	-		TX73_023645	0.21	+0.1
5,130,630	-		TX73_023645	0.24	-2.3
5,130,632	+		TX73_023645	0.24	+2.7
5,130,642	+		TX73_023645	0.25	-0.4
5,130,648	-		TX73_023645	0.25	+1.2
5,130,649	+		TX73_023645	0.25	+1.2
5,130,665	+		TX73_023645	0.26	+0.1
5,130,681	+		TX73_023645	0.28	-2.7
5,130,683	-		TX73_023645	0.28	-2.8
5,130,698	-		TX73_023645	0.29	-1.8
5,130,723	+		TX73_023645	0.31	-2.3
5,130,751	-		TX73_023645	0.33	-1.0
5,130,768	+		TX73_023645	0.34	-0.9
5,130,768	+		TX73_023645	0.34	+0.4
5,130,769	+		TX73_023645	0.34	+1.3
5,130,776	-		TX73_023645	0.35	-2.5
5,130,831	+		TX73_023645	0.39	+2.0
5,130,831	+		TX73_023645	0.39	+1.4
5,130,886	+		TX73_023645	0.43	+3.0
5,130,902	-		TX73_023645	0.45	+0.7
5,130,907	-		TX73_023645	0.45	-0.0
5,130,916	-		TX73_023645	0.46	-2.2
5,130,919	-		TX73_023645	0.46	-1.9
5,130,934	+		TX73_023645	0.47	-3.5
5,130,949	+		TX73_023645	0.48	-1.3
5,130,981	+		TX73_023645	0.51	-0.2
5,130,995	-		TX73_023645	0.52	-2.1
5,130,995	-		TX73_023645	0.52	+0.7
5,130,995	-		TX73_023645	0.52	+0.7
5,131,024	+		TX73_023645	0.54	+0.6
5,131,031	+		TX73_023645	0.55	+2.4
5,131,043	+		TX73_023645	0.56	-0.6
5,131,108	-		TX73_023645	0.61	+0.3
5,131,137	+		TX73_023645	0.63	+0.7
5,131,142	+		TX73_023645	0.63	+1.0
5,131,143	+		TX73_023645	0.63	-1.8
5,131,145	-		TX73_023645	0.64	+2.6
5,131,145	-		TX73_023645	0.64	-0.9
5,131,151	-		TX73_023645	0.64	-0.8
5,131,151	-		TX73_023645	0.64	-1.4
5,131,180	+		TX73_023645	0.66	-0.3
5,131,190	-		TX73_023645	0.67	-3.5
5,131,190	-		TX73_023645	0.67	+2.5
5,131,190	-		TX73_023645	0.67	-1.0
5,131,197	-		TX73_023645	0.68	+1.3
5,131,199	+		TX73_023645	0.68	+0.5
5,131,207	-		TX73_023645	0.68	-0.5
5,131,274	-		TX73_023645	0.74	-0.7
5,131,274	-		TX73_023645	0.74	+0.8
5,131,297	+		TX73_023645	0.75	+0.6
5,131,297	+		TX73_023645	0.75	+0.7
5,131,350	+		TX73_023645	0.79	-0.1
5,131,352	-		TX73_023645	0.80	+0.4
5,131,395	-		TX73_023645	0.83	+1.2
5,131,404	+		TX73_023645	0.84	+1.3
5,131,408	-		TX73_023645	0.84	+0.3
5,131,452	+		TX73_023645	0.87	+1.9
5,131,472	+		TX73_023645	0.89	+1.1
5,131,473	-		TX73_023645	0.89	+2.5
5,131,482	+		TX73_023645	0.90	+0.6
5,131,642	+				-1.8
5,131,642	+				+3.5
5,131,652	-				-0.6
5,131,661	+				-0.1
5,131,666	+				-1.6
5,131,666	+				-0.8
5,131,690	+				-1.4
5,131,700	-				+0.7
5,131,714	+				+0.6
5,131,717	-				-1.1
5,131,737	+				+2.1
5,131,752	+				-2.3
5,131,787	+		TX73_023650	0.11	-0.5
5,131,811	+		TX73_023650	0.13	-0.5
5,131,833	+		TX73_023650	0.15	-0.1
5,131,846	-		TX73_023650	0.16	+0.1
5,131,851	-		TX73_023650	0.16	+0.8
5,131,881	-		TX73_023650	0.19	+1.5
5,131,889	-		TX73_023650	0.19	-1.7
5,131,948	+		TX73_023650	0.24	+1.0
5,131,974	+		TX73_023650	0.26	+0.8
5,131,984	+		TX73_023650	0.27	-0.0
5,132,000	-		TX73_023650	0.28	-1.4
5,132,015	+		TX73_023650	0.29	-2.1
5,132,023	-		TX73_023650	0.30	-2.4
5,132,047	+		TX73_023650	0.32	+1.2
5,132,048	+		TX73_023650	0.32	-2.1
5,132,095	+		TX73_023650	0.36	+1.5
5,132,114	+		TX73_023650	0.37	-0.5
5,132,147	-		TX73_023650	0.40	-0.5
5,132,249	+		TX73_023650	0.48	-0.4
5,132,376	+		TX73_023650	0.58	-0.4
5,132,381	+		TX73_023650	0.59	-2.0
5,132,381	+		TX73_023650	0.59	-0.3
5,132,381	+		TX73_023650	0.59	-2.9
5,132,389	-		TX73_023650	0.59	+0.5
5,132,389	-		TX73_023650	0.59	-0.5
5,132,389	-		TX73_023650	0.59	-1.2
5,132,464	+		TX73_023650	0.65	+0.3
5,132,531	-		TX73_023650	0.71	+1.5
5,132,592	-		TX73_023650	0.76	-0.4
5,132,592	-		TX73_023650	0.76	+1.7