Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020405

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
4,447,792	-		TX73_020395	0.86	+0.8
4,447,792	-		TX73_020395	0.86	-1.1
4,447,821	-		TX73_020395	0.88	+0.6
4,447,841	+		TX73_020395	0.89	+0.2
4,447,841	+		TX73_020395	0.89	+0.8
4,447,842	-		TX73_020395	0.89	+1.1
4,447,849	-		TX73_020395	0.90	+0.4
4,447,878	+				+0.6
4,447,886	-				+1.9
4,447,888	+				+0.3
4,447,889	+				-1.2
4,447,965	+				-0.6
4,447,965	+				+1.0
4,447,965	-				-0.2
4,447,973	-				-0.3
4,447,973	-				+0.3
4,447,975	-				+1.0
4,447,992	+				-0.8
4,447,997	+				-0.2
4,447,999	-				-1.2
4,448,002	+				+0.9
4,448,002	+				-0.3
4,448,010	-				+1.4
4,448,029	+				-0.8
4,448,044	+				+0.6
4,448,044	+				-0.1
4,448,044	+				-0.0
4,448,044	+				+1.6
4,448,044	+				+0.7
4,448,052	-				+2.0
4,448,052	-				+0.0
4,448,067	-				+0.9
4,448,091	+				+0.5
4,448,117	-				-0.7
4,448,157	-				+0.1
4,448,187	-				+1.7
4,448,191	+				-1.2
4,448,194	-				-0.5
4,448,208	+		TX73_020400	0.10	-0.5
4,448,211	-		TX73_020400	0.11	+0.2
4,448,213	-		TX73_020400	0.11	+0.3
4,448,216	-		TX73_020400	0.12	-0.4
4,448,216	-		TX73_020400	0.12	-2.1
4,448,216	-		TX73_020400	0.12	+1.1
4,448,221	-		TX73_020400	0.13	+0.3
4,448,240	+		TX73_020400	0.17	-0.6
4,448,295	+		TX73_020400	0.28	+2.4
4,448,356	-		TX73_020400	0.40	-2.0
4,448,408	+		TX73_020400	0.51	+0.7
4,448,415	-		TX73_020400	0.52	-1.6
4,448,423	+		TX73_020400	0.54	-1.6
4,448,430	-		TX73_020400	0.55	+0.1
4,448,431	-		TX73_020400	0.55	-0.4
4,448,445	+		TX73_020400	0.58	-0.6
4,448,446	+		TX73_020400	0.58	+1.8
4,448,458	+		TX73_020400	0.61	+1.2
4,448,466	-		TX73_020400	0.62	+0.5
4,448,494	+		TX73_020400	0.68	+1.5
4,448,494	+		TX73_020400	0.68	-0.1
4,448,494	+		TX73_020400	0.68	+0.1
4,448,501	+		TX73_020400	0.69	+0.4
4,448,502	-		TX73_020400	0.69	+0.9
4,448,502	-		TX73_020400	0.69	+0.9
4,448,504	-		TX73_020400	0.70	-0.1
4,448,511	+		TX73_020400	0.71	-0.9
4,448,516	-		TX73_020400	0.72	+0.2
4,448,607	-				+0.2
4,448,630	-				-1.1
4,448,657	+				-0.1
4,448,693	-				+0.1
4,448,705	+				-0.7
4,448,705	+				-0.5
4,448,706	-				+0.6
4,448,713	-				+0.7
4,448,713	-				-0.7
4,448,721	+				+0.2
4,448,729	-				+1.0
4,448,807	+				-1.4
4,448,817	+				-0.3
4,448,836	-				+0.2
4,448,838	+				-1.0
4,448,838	-				+2.0
4,448,840	-				+2.1
4,448,843	+				+0.8
4,448,860	+				-2.5
4,448,860	+				+0.2
4,448,868	-				+0.2
4,448,868	-				+1.1
4,448,886	+				-1.1
4,448,899	-				+0.3
4,448,899	-				-0.9
4,448,917	+				-0.9
4,448,925	-				+2.0
4,448,984	-		TX73_020405	0.13	+1.3
4,448,985	+		TX73_020405	0.14	-0.0
4,448,987	+		TX73_020405	0.14	+2.1
4,448,992	-		TX73_020405	0.14	+1.4
4,449,013	-		TX73_020405	0.15	-2.5
4,449,040	+		TX73_020405	0.17	-0.7
4,449,040	+		TX73_020405	0.17	+1.7
4,449,047	-		TX73_020405	0.18	-0.2
4,449,048	-		TX73_020405	0.18	-0.3
4,449,048	-		TX73_020405	0.18	+2.0
4,449,048	-		TX73_020405	0.18	-1.2
4,449,048	-		TX73_020405	0.18	+0.7
4,449,048	-		TX73_020405	0.18	-2.3
4,449,048	-		TX73_020405	0.18	-0.4
4,449,048	-		TX73_020405	0.18	-1.9
4,449,050	-		TX73_020405	0.18	-1.0
4,449,085	+		TX73_020405	0.20	+1.0
4,449,085	+		TX73_020405	0.20	-1.1
4,449,088	-		TX73_020405	0.21	+2.1
4,449,093	-		TX73_020405	0.21	-0.1
4,449,097	-		TX73_020405	0.21	-1.0
4,449,132	+		TX73_020405	0.24	-0.3
4,449,140	-		TX73_020405	0.24	-0.7
4,449,173	-		TX73_020405	0.26	-0.5
4,449,178	-		TX73_020405	0.27	+1.1
4,449,207	-		TX73_020405	0.29	-2.1
4,449,209	+		TX73_020405	0.29	+2.8
4,449,209	-		TX73_020405	0.29	-2.4
4,449,234	+		TX73_020405	0.31	+0.5
4,449,235	+		TX73_020405	0.31	+2.2
4,449,237	-		TX73_020405	0.31	+0.1
4,449,242	-		TX73_020405	0.31	+1.4
4,449,242	-		TX73_020405	0.31	+1.1
4,449,242	-		TX73_020405	0.31	+0.0
4,449,242	-		TX73_020405	0.31	+2.8
4,449,244	+		TX73_020405	0.31	+0.8
4,449,244	+		TX73_020405	0.31	+2.0
4,449,244	+		TX73_020405	0.31	-0.1
4,449,244	+		TX73_020405	0.31	-1.9
4,449,244	+		TX73_020405	0.31	+1.2
4,449,312	-		TX73_020405	0.36	-1.6
4,449,314	+		TX73_020405	0.36	+0.8
4,449,319	+		TX73_020405	0.36	+1.4
4,449,319	+		TX73_020405	0.36	+0.3
4,449,320	+		TX73_020405	0.36	+1.6
4,449,337	+		TX73_020405	0.38	-2.1
4,449,343	+		TX73_020405	0.38	-0.5
4,449,370	+		TX73_020405	0.40	-2.1
4,449,380	+		TX73_020405	0.41	+1.2
4,449,388	+		TX73_020405	0.41	-0.2
4,449,461	+		TX73_020405	0.46	-0.0
4,449,466	-		TX73_020405	0.46	+3.3
4,449,476	-		TX73_020405	0.47	-1.8
4,449,517	-		TX73_020405	0.50	-0.8
4,449,518	+		TX73_020405	0.50	+1.7
4,449,539	-		TX73_020405	0.51	-1.8
4,449,550	-		TX73_020405	0.52	-0.9
4,449,557	+		TX73_020405	0.53	-1.4
4,449,577	-		TX73_020405	0.54	-0.7
4,449,577	-		TX73_020405	0.54	-1.6
4,449,645	-		TX73_020405	0.59	-1.4
4,449,659	+		TX73_020405	0.60	+1.4
4,449,659	+		TX73_020405	0.60	-2.2
4,449,667	-		TX73_020405	0.60	-0.2
4,449,668	-		TX73_020405	0.60	+1.5
4,449,698	-		TX73_020405	0.62	-0.4
4,449,727	-		TX73_020405	0.64	-2.3
4,449,753	-		TX73_020405	0.66	+2.8
4,449,771	+		TX73_020405	0.67	+0.2
4,449,779	-		TX73_020405	0.68	+2.2
4,449,779	-		TX73_020405	0.68	+2.0
4,449,779	-		TX73_020405	0.68	-1.1
4,449,779	-		TX73_020405	0.68	-1.6
4,449,870	-		TX73_020405	0.74	-2.1
4,449,870	-		TX73_020405	0.74	-0.8
4,449,872	-		TX73_020405	0.74	+0.5
4,449,885	-		TX73_020405	0.75	-0.5
4,449,893	+		TX73_020405	0.76	-1.1
4,449,899	-		TX73_020405	0.76	+0.0
4,449,933	+		TX73_020405	0.78	-1.8
4,449,941	-		TX73_020405	0.79	-1.5
4,449,949	+		TX73_020405	0.80	-0.9
4,449,954	+		TX73_020405	0.80	-0.7
4,449,955	+		TX73_020405	0.80	+0.7
4,449,963	-		TX73_020405	0.80	-0.6
4,449,963	-		TX73_020405	0.80	+1.9
4,449,999	+		TX73_020405	0.83	+0.4
4,449,999	+		TX73_020405	0.83	-0.2
4,450,000	+		TX73_020405	0.83	-0.1
4,450,000	+		TX73_020405	0.83	-0.4
4,450,006	-		TX73_020405	0.83	+1.1
4,450,010	+		TX73_020405	0.84	-2.1
4,450,012	-		TX73_020405	0.84	-1.4
4,450,060	+		TX73_020405	0.87	-2.6
4,450,078	-		TX73_020405	0.88	-0.0
4,450,088	-		TX73_020405	0.89	+1.5
4,450,094	-		TX73_020405	0.89	+3.0
4,450,116	-				+2.7
4,450,124	+				+1.9
4,450,145	+				-1.4
4,450,153	-				-0.4
4,450,153	-				-1.5
4,450,164	+				-0.8
4,450,165	-				-1.6
4,450,172	-				+0.1
4,450,203	-				-2.2
4,450,254	+				+0.2
4,450,262	-				-0.6
4,450,314	+				-0.0
4,450,314	+				+0.2
4,450,323	+				+0.9
4,450,331	-				+0.9
4,450,351	+				+0.6
4,450,385	-				+0.1
4,450,403	-				+5.7
4,450,403	-				+5.5
4,450,421	+				+5.5
4,450,498	-		TX73_020410	0.21	+5.9
4,450,530	-		TX73_020410	0.27	+5.7
4,450,555	+		TX73_020410	0.31	+6.0
4,450,560	+		TX73_020410	0.32	+5.9
4,450,565	+		TX73_020410	0.33	+5.8
4,450,602	-		TX73_020410	0.40	+5.8
4,450,613	-		TX73_020410	0.42	+6.1
4,450,635	-		TX73_020410	0.47	+6.1
4,450,647	-		TX73_020410	0.49	+5.7
4,450,694	-		TX73_020410	0.58	+5.8
4,450,700	-		TX73_020410	0.59	+5.5
4,450,700	-		TX73_020410	0.59	+6.0
4,450,722	+		TX73_020410	0.63	+5.9
4,450,722	+		TX73_020410	0.63	+5.8
4,450,724	-		TX73_020410	0.63	+5.9
4,450,753	+		TX73_020410	0.69	+6.2
4,450,780	+		TX73_020410	0.74	+5.4
4,450,788	-		TX73_020410	0.75	+6.0
4,450,789	+		TX73_020410	0.76	+5.5
4,450,795	-		TX73_020410	0.77	+5.7
4,450,797	-		TX73_020410	0.77	+5.3
4,450,825	-		TX73_020410	0.82	+6.0
4,450,874	+				+5.6
4,450,899	-				+4.0
4,450,913	+				+0.2
4,450,921	-				-1.7
4,450,955	-				-0.2
4,450,994	+				-1.0
4,450,994	+				-1.4
4,450,994	+				-0.8
4,451,057	-		TX73_020415	0.22	-1.2
4,451,150	+		TX73_020415	0.44	+0.3
4,451,158	-		TX73_020415	0.45	+0.6
4,451,165	+		TX73_020415	0.47	-0.2
4,451,165	+		TX73_020415	0.47	-0.8
4,451,173	-		TX73_020415	0.49	+0.1
4,451,213	-		TX73_020415	0.58	+1.0
4,451,215	+		TX73_020415	0.59	-1.5
4,451,215	+		TX73_020415	0.59	-0.9
4,451,215	+		TX73_020415	0.59	-2.2
4,451,215	+		TX73_020415	0.59	-0.3
4,451,223	-		TX73_020415	0.60	-0.6
4,451,223	-		TX73_020415	0.60	-1.4
4,451,238	-		TX73_020415	0.64	-1.1