Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_008395

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
1,814,924	+		TX73_008390	0.33	-0.7
1,814,932	+		TX73_008390	0.34	+0.1
1,814,933	+		TX73_008390	0.34	+0.1
1,814,934	-		TX73_008390	0.34	+0.1
1,814,954	-		TX73_008390	0.36	+1.4
1,814,956	+		TX73_008390	0.36	-0.0
1,814,965	+		TX73_008390	0.36	+0.2
1,814,996	+		TX73_008390	0.39	+0.6
1,815,066	+		TX73_008390	0.44	+0.9
1,815,073	+		TX73_008390	0.44	+0.4
1,815,074	+		TX73_008390	0.45	+0.6
1,815,074	+		TX73_008390	0.45	-0.2
1,815,074	-		TX73_008390	0.45	-2.0
1,815,074	-		TX73_008390	0.45	-0.1
1,815,089	-		TX73_008390	0.46	-0.2
1,815,118	-		TX73_008390	0.48	-0.4
1,815,118	-		TX73_008390	0.48	-0.5
1,815,118	-		TX73_008390	0.48	+0.4
1,815,125	+		TX73_008390	0.48	-2.0
1,815,133	-		TX73_008390	0.49	+1.8
1,815,148	-		TX73_008390	0.50	-0.5
1,815,174	+		TX73_008390	0.52	-0.4
1,815,179	+		TX73_008390	0.52	+1.1
1,815,224	+		TX73_008390	0.56	+0.4
1,815,225	-		TX73_008390	0.56	+0.6
1,815,240	-		TX73_008390	0.57	-0.9
1,815,244	-		TX73_008390	0.57	-0.3
1,815,256	-		TX73_008390	0.58	-1.1
1,815,313	+		TX73_008390	0.63	-0.3
1,815,321	+		TX73_008390	0.63	+0.4
1,815,321	-		TX73_008390	0.63	+0.0
1,815,321	-		TX73_008390	0.63	+0.8
1,815,321	-		TX73_008390	0.63	+0.7
1,815,329	+		TX73_008390	0.64	+0.1
1,815,333	+		TX73_008390	0.64	-0.5
1,815,365	+		TX73_008390	0.67	+0.5
1,815,365	+		TX73_008390	0.67	-1.1
1,815,366	+		TX73_008390	0.67	-0.2
1,815,366	+		TX73_008390	0.67	-0.4
1,815,366	+		TX73_008390	0.67	+0.2
1,815,373	-		TX73_008390	0.67	-2.0
1,815,374	-		TX73_008390	0.67	-0.1
1,815,374	-		TX73_008390	0.67	+0.7
1,815,374	-		TX73_008390	0.67	+0.8
1,815,374	-		TX73_008390	0.67	-0.7
1,815,374	-		TX73_008390	0.67	+1.0
1,815,379	-		TX73_008390	0.68	+0.9
1,815,385	+		TX73_008390	0.68	-0.2
1,815,385	+		TX73_008390	0.68	+0.3
1,815,391	-		TX73_008390	0.68	-0.3
1,815,392	+		TX73_008390	0.69	-0.5
1,815,397	-		TX73_008390	0.69	+0.4
1,815,412	+		TX73_008390	0.70	+0.4
1,815,415	-		TX73_008390	0.70	-0.8
1,815,417	+		TX73_008390	0.70	-0.8
1,815,460	-		TX73_008390	0.74	+1.2
1,815,472	-		TX73_008390	0.75	+1.1
1,815,479	-		TX73_008390	0.75	-2.6
1,815,479	-		TX73_008390	0.75	-0.5
1,815,487	-		TX73_008390	0.76	-0.3
1,815,522	+		TX73_008390	0.78	+0.7
1,815,527	-		TX73_008390	0.79	+0.2
1,815,542	-		TX73_008390	0.80	+0.4
1,815,549	-		TX73_008390	0.80	-3.0
1,815,578	+		TX73_008390	0.83	+1.0
1,815,599	+		TX73_008390	0.84	+0.4
1,815,607	-		TX73_008390	0.85	-1.1
1,815,622	-		TX73_008390	0.86	-0.7
1,815,627	+		TX73_008390	0.86	+0.1
1,815,640	-		TX73_008390	0.87	+0.1
1,815,643	+		TX73_008390	0.87	+0.8
1,815,702	-				+0.7
1,815,728	+				+1.1
1,815,746	+				+1.4
1,815,747	+				+0.7
1,815,776	-				-0.5
1,815,859	-				-1.3
1,815,860	+				-0.8
1,815,884	+				+0.9
1,815,898	+				-0.5
1,815,899	-				+1.2
1,815,906	-				+1.8
1,815,906	-				-1.2
1,816,193	+		TX73_008395	0.64	-0.4
1,816,283	+		TX73_008395	0.85	-0.3
1,816,295	-		TX73_008395	0.88	-2.8
1,816,295	-		TX73_008395	0.88	-1.1
1,816,297	+		TX73_008395	0.88	+1.1
1,816,302	+		TX73_008395	0.90	-0.2
1,816,303	-		TX73_008395	0.90	-1.3
1,816,305	-				-0.4
1,816,310	-				-0.4
1,816,310	-				+1.3
1,816,310	-				-2.3
1,816,319	+				+0.4
1,816,320	-				-1.6
1,816,327	-				+0.3
1,816,327	-				-1.2
1,816,328	+				-1.5
1,816,328	+				-1.5
1,816,328	+				-1.7
1,816,340	+				-2.0
1,816,340	+				-1.1
1,816,359	-				+1.8
1,816,380	-				+0.7
1,816,406	+				-0.8
1,816,414	-				-0.1
1,816,414	-				-0.2
1,816,414	-				-0.5
1,816,414	-				-0.7
1,816,417	+				+0.5
1,816,417	+				+0.7
1,816,417	+				+0.5
1,816,425	-				-0.7
1,816,429	+				+0.4
1,816,430	-				-1.4
1,816,451	+				+0.8
1,816,459	-				+1.7
1,816,461	+				-0.7
1,816,480	+				+0.8
1,816,504	+				-1.3
1,816,504	+				+0.5
1,816,504	+				-0.5
1,816,509	+				-2.1
1,816,512	-				-1.2
1,816,515	+				-0.9
1,816,570	-				+1.9
1,816,573	+				-0.1
1,816,583	-		TX73_008400	0.11	+1.8
1,816,624	-		TX73_008400	0.18	+1.1
1,816,629	-		TX73_008400	0.19	-0.8
1,816,694	+		TX73_008400	0.31	+1.3
1,816,699	+		TX73_008400	0.32	+1.4
1,816,704	+		TX73_008400	0.33	-0.3
1,816,704	+		TX73_008400	0.33	-0.6
1,816,704	+		TX73_008400	0.33	-0.5
1,816,712	-		TX73_008400	0.34	-1.4
1,816,741	+		TX73_008400	0.40	-0.6
1,816,749	-		TX73_008400	0.41	-0.4
1,816,751	-		TX73_008400	0.42	-1.8
1,816,802	+		TX73_008400	0.51	+0.6
1,816,810	-		TX73_008400	0.52	-0.4
1,816,820	-		TX73_008400	0.54	-1.1
1,816,895	-		TX73_008400	0.68	-0.6
1,816,903	-		TX73_008400	0.69	+0.5
1,816,915	+		TX73_008400	0.71	-0.6
1,816,935	+		TX73_008400	0.75	+1.8
1,816,957	-		TX73_008400	0.79	+1.0
1,816,961	+		TX73_008400	0.80	-2.8
1,816,969	-		TX73_008400	0.81	+1.9
1,816,969	-		TX73_008400	0.81	-0.7
1,816,969	-		TX73_008400	0.81	+1.3
1,816,978	+		TX73_008400	0.83	+0.0
1,816,981	-		TX73_008400	0.83	+0.1
1,816,997	+		TX73_008400	0.86	-2.2
1,816,998	-		TX73_008400	0.87	-1.0
1,817,019	-				-1.7
1,817,021	+				+0.9
1,817,045	+				-0.1
1,817,045	+				+0.4
1,817,055	+				-1.3
1,817,063	-				-0.9
1,817,063	-				-1.7
1,817,063	-				-1.3
1,817,065	+				-0.4
1,817,065	+				+0.5
1,817,073	+				+0.9
1,817,079	+				-0.7
1,817,088	-				+1.3
1,817,095	-				-0.2
1,817,118	+				+0.7
1,817,118	+				+0.8
1,817,150	-				-0.1
1,817,183	-		TX73_008405	0.12	+0.6
1,817,190	+		TX73_008405	0.13	-0.7
1,817,190	+		TX73_008405	0.13	-0.6
1,817,198	-		TX73_008405	0.13	-0.9
1,817,198	-		TX73_008405	0.13	-2.1
1,817,213	-		TX73_008405	0.15	+1.0
1,817,241	+		TX73_008405	0.18	+1.5
1,817,241	+		TX73_008405	0.18	+0.7
1,817,266	-		TX73_008405	0.21	+0.2
1,817,271	+		TX73_008405	0.21	+1.1
1,817,279	-		TX73_008405	0.22	+1.3
1,817,279	-		TX73_008405	0.22	+1.7
1,817,321	-		TX73_008405	0.26	-1.7