Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_008075

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
1,746,212	-		TX73_008070	0.12	-0.1
1,746,224	+		TX73_008070	0.13	+0.5
1,746,224	+		TX73_008070	0.13	-1.1
1,746,224	+		TX73_008070	0.13	-1.0
1,746,232	-		TX73_008070	0.14	+0.1
1,746,232	-		TX73_008070	0.14	-0.9
1,746,232	-		TX73_008070	0.14	-0.3
1,746,232	-		TX73_008070	0.14	-2.1
1,746,245	-		TX73_008070	0.16	-0.9
1,746,259	+		TX73_008070	0.17	-1.9
1,746,261	+		TX73_008070	0.18	+0.7
1,746,274	-		TX73_008070	0.19	+0.3
1,746,281	+		TX73_008070	0.20	-0.5
1,746,283	+		TX73_008070	0.20	+0.2
1,746,283	+		TX73_008070	0.20	+0.8
1,746,284	-		TX73_008070	0.20	-1.0
1,746,284	-		TX73_008070	0.20	+1.1
1,746,305	+		TX73_008070	0.23	-0.1
1,746,375	+		TX73_008070	0.31	-0.8
1,746,383	-		TX73_008070	0.32	+1.1
1,746,383	-		TX73_008070	0.32	+0.3
1,746,443	+		TX73_008070	0.38	-1.5
1,746,504	+		TX73_008070	0.45	+1.0
1,746,509	+		TX73_008070	0.46	+1.1
1,746,512	-		TX73_008070	0.46	+0.5
1,746,542	+		TX73_008070	0.50	+0.4
1,746,603	+		TX73_008070	0.57	-1.2
1,746,603	+		TX73_008070	0.57	-1.2
1,746,629	-		TX73_008070	0.60	+2.2
1,746,657	+		TX73_008070	0.63	+0.4
1,746,673	+		TX73_008070	0.65	+1.1
1,746,673	+		TX73_008070	0.65	-0.7
1,746,681	-		TX73_008070	0.66	-0.3
1,746,683	-		TX73_008070	0.66	-0.9
1,746,737	-		TX73_008070	0.72	+1.0
1,746,744	+		TX73_008070	0.73	-3.4
1,746,745	+		TX73_008070	0.73	-0.5
1,746,770	-		TX73_008070	0.76	-0.3
1,746,771	+		TX73_008070	0.76	+0.7
1,746,771	+		TX73_008070	0.76	+0.9
1,746,771	+		TX73_008070	0.76	+1.3
1,746,771	-		TX73_008070	0.76	-0.7
1,746,779	-		TX73_008070	0.77	+0.2
1,746,779	-		TX73_008070	0.77	-0.0
1,746,783	+		TX73_008070	0.77	-0.7
1,746,796	+		TX73_008070	0.79	-0.1
1,746,796	+		TX73_008070	0.79	+0.1
1,746,796	+		TX73_008070	0.79	-0.7
1,746,872	-		TX73_008070	0.87	+2.1
1,746,883	-		TX73_008070	0.89	-0.8
1,746,888	+		TX73_008070	0.89	+0.5
1,746,914	-				+2.0
1,746,950	-				-0.2
1,746,964	-				+0.8
1,746,989	-				+1.4
1,746,989	-				+0.7
1,746,989	-				-0.8
1,746,989	-				+0.7
1,746,989	-				-0.1
1,747,015	-				-1.0
1,747,130	-				-2.4
1,747,141	+				+2.3
1,747,149	-				+1.3
1,747,150	-				+0.2
1,747,160	+				+0.8
1,747,222	+				-0.1
1,747,222	+				+0.1
1,747,240	-				-0.5
1,747,250	+				+1.5
1,747,250	-				-0.0
1,747,356	-				-0.2
1,747,367	-				-2.0
1,747,389	-				-0.1
1,747,429	+				-1.7
1,747,462	+		TX73_008075	0.11	+0.2
1,747,486	-		TX73_008075	0.12	-1.4
1,747,514	-		TX73_008075	0.13	-0.7
1,747,623	+		TX73_008075	0.18	-2.3
1,747,676	-		TX73_008075	0.20	-2.3
1,747,722	+		TX73_008075	0.22	-0.9
1,747,722	+		TX73_008075	0.22	+0.4
1,747,737	-		TX73_008075	0.23	+1.0
1,747,756	-		TX73_008075	0.24	+0.9
1,747,763	+		TX73_008075	0.24	-1.4
1,747,763	+		TX73_008075	0.24	+1.3
1,747,771	-		TX73_008075	0.24	-1.7
1,747,771	-		TX73_008075	0.24	+0.1
1,747,773	+		TX73_008075	0.24	-0.3
1,747,776	-		TX73_008075	0.24	-0.5
1,747,857	-		TX73_008075	0.28	+9.7
1,747,897	+		TX73_008075	0.30	+0.4
1,747,902	+		TX73_008075	0.30	+1.3
1,747,922	+		TX73_008075	0.31	+2.3
1,747,922	+		TX73_008075	0.31	-0.1
1,747,940	-		TX73_008075	0.31	+0.7
1,747,965	-		TX73_008075	0.33	-1.1
1,748,373	+		TX73_008075	0.50	-0.1
1,748,428	+		TX73_008075	0.52	-1.9
1,748,443	+		TX73_008075	0.53	+0.1
1,748,457	+		TX73_008075	0.54	+0.1
1,748,464	-		TX73_008075	0.54	+0.3
1,748,464	-		TX73_008075	0.54	+1.4
1,748,464	-		TX73_008075	0.54	-0.2
1,748,465	-		TX73_008075	0.54	+0.7
1,748,481	+		TX73_008075	0.55	-1.2
1,748,489	-		TX73_008075	0.55	-0.1
1,748,513	+		TX73_008075	0.56	-0.6
1,748,521	+		TX73_008075	0.56	-0.5
1,748,529	-		TX73_008075	0.57	+0.9
1,748,545	+		TX73_008075	0.57	-1.4
1,748,545	+		TX73_008075	0.57	+0.1
1,748,545	+		TX73_008075	0.57	+0.0
1,748,553	-		TX73_008075	0.58	+0.5
1,748,553	-		TX73_008075	0.58	-2.5
1,748,553	-		TX73_008075	0.58	-0.8
1,748,581	-		TX73_008075	0.59	-1.3
1,748,665	-		TX73_008075	0.63	+0.7
1,748,667	+		TX73_008075	0.63	+1.8
1,748,673	-		TX73_008075	0.63	-0.4
1,748,675	-		TX73_008075	0.63	+1.3
1,748,708	+		TX73_008075	0.64	+0.4
1,748,709	+		TX73_008075	0.64	+0.8
1,748,717	+		TX73_008075	0.65	-2.3
1,748,728	+		TX73_008075	0.65	-2.6
1,748,728	+		TX73_008075	0.65	+0.2
1,748,751	-		TX73_008075	0.66	+0.1
1,748,753	+		TX73_008075	0.66	+0.9
1,748,782	-		TX73_008075	0.68	+0.2
1,748,792	-		TX73_008075	0.68	-1.2
1,748,829	-		TX73_008075	0.70	+0.7
1,748,846	-		TX73_008075	0.70	-0.8
1,748,882	-		TX73_008075	0.72	-1.1
1,748,945	+		TX73_008075	0.75	-0.9
1,748,983	+		TX73_008075	0.76	+0.3
1,749,019	-		TX73_008075	0.78	+0.1
1,749,050	+		TX73_008075	0.79	-1.1
1,749,100	-		TX73_008075	0.81	-0.4
1,749,105	+		TX73_008075	0.81	+1.3
1,749,129	+		TX73_008075	0.82	+0.3
1,749,131	+		TX73_008075	0.83	-0.2
1,749,136	+		TX73_008075	0.83	+1.2
1,749,139	-		TX73_008075	0.83	-0.0
1,749,142	-		TX73_008075	0.83	+0.6
1,749,152	+		TX73_008075	0.83	-1.5
1,749,271	-		TX73_008075	0.89	+0.9
1,749,288	-		TX73_008075	0.89	-0.9
1,749,297	-		TX73_008075	0.90	+0.1
1,749,331	+				+0.2
1,749,332	+				+1.1
1,749,370	+				-0.3
1,749,378	-				+0.4
1,749,378	-				-0.7
1,749,378	-				-0.3
1,749,413	-				-1.2
1,749,417	+				+0.7
1,749,454	+				+1.7
1,749,462	+				+0.1
1,749,467	+				-2.7
1,749,482	-				+0.2
1,749,512	+				-1.4
1,749,531	+				+1.4
1,749,566	-				+0.6
1,749,577	+				-0.6
1,749,582	+				-0.6
1,749,585	-				+1.5
1,749,585	-				-0.9
1,749,632	+				+2.7
1,749,657	+				-1.5
1,749,661	+				+2.8
1,749,661	+				-1.0
1,749,686	-		TX73_008080	0.12	-0.4
1,749,686	-		TX73_008080	0.12	-0.1
1,749,690	-		TX73_008080	0.12	+1.7
1,749,692	+		TX73_008080	0.13	-1.9
1,749,712	-		TX73_008080	0.16	-1.8
1,749,717	+		TX73_008080	0.17	+0.4
1,749,752	+		TX73_008080	0.22	-0.3
1,749,779	+		TX73_008080	0.27	+0.8
1,749,784	+		TX73_008080	0.28	+0.9
1,749,786	+		TX73_008080	0.28	-0.4
1,749,792	-		TX73_008080	0.29	-0.9
1,749,809	+		TX73_008080	0.32	-0.1
1,749,822	-		TX73_008080	0.34	+0.4
1,749,841	+		TX73_008080	0.37	+0.2
1,749,849	-		TX73_008080	0.38	+1.4
1,749,861	+		TX73_008080	0.40	-1.0
1,749,861	+		TX73_008080	0.40	+1.5
1,749,869	+		TX73_008080	0.41	-0.1
1,749,869	-		TX73_008080	0.41	-1.2
1,749,949	-		TX73_008080	0.54	-0.8
1,749,953	+		TX73_008080	0.55	+1.8
1,750,009	+		TX73_008080	0.64	-0.7
1,750,009	+		TX73_008080	0.64	+1.0
1,750,017	-		TX73_008080	0.66	+0.7
1,750,070	+		TX73_008080	0.74	-0.9
1,750,070	+		TX73_008080	0.74	-0.8
1,750,089	+		TX73_008080	0.77	-1.5
1,750,123	-		TX73_008080	0.83	+0.3
1,750,195	-				-2.6
1,750,209	+				-1.0
1,750,227	-				+0.3
1,750,278	+				-2.5
1,750,278	-				+1.0
1,750,283	+				+0.2
1,750,349	-		TX73_008085	0.13	-1.6
1,750,349	-		TX73_008085	0.13	+0.5
1,750,385	-		TX73_008085	0.16	+0.1
1,750,405	+		TX73_008085	0.19	+0.1
1,750,431	+		TX73_008085	0.21	+1.0