Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002045 and TX73_002050 overlap by 4 nucleotides TX73_002050 and TX73_002055 overlap by 1 nucleotides TX73_002055 and TX73_002060 are separated by 4 nucleotides
TX73_002045: TX73_002045 - phosphatase PAP2 family protein, at 433,171 to 433,950
_002045
TX73_002050: TX73_002050 - hypothetical protein, at 433,947 to 434,447
_002050
TX73_002055: TX73_002055 - HD domain-containing protein, at 434,447 to 435,040
_002055
TX73_002060: TX73_002060 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 435,045 to 436,244
_002060
Position (kb) 434
435
436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 433.691 kb on - strand, within TX73_002045 at 433.837 kb on - strand, within TX73_002045 at 433.837 kb on - strand, within TX73_002045 at 433.957 kb on + strand at 434.032 kb on + strand, within TX73_002050 at 434.050 kb on + strand, within TX73_002050 at 434.060 kb on + strand, within TX73_002050 at 434.060 kb on - strand, within TX73_002050 at 434.153 kb on + strand, within TX73_002050 at 434.161 kb on - strand, within TX73_002050 at 434.161 kb on - strand, within TX73_002050 at 434.161 kb on - strand, within TX73_002050 at 434.170 kb on + strand, within TX73_002050 at 434.175 kb on + strand, within TX73_002050 at 434.194 kb on + strand, within TX73_002050 at 434.199 kb on + strand, within TX73_002050 at 434.199 kb on + strand, within TX73_002050 at 434.199 kb on + strand, within TX73_002050 at 434.201 kb on - strand, within TX73_002050 at 434.202 kb on - strand, within TX73_002050 at 434.202 kb on - strand, within TX73_002050 at 434.202 kb on - strand, within TX73_002050 at 434.207 kb on - strand, within TX73_002050 at 434.225 kb on + strand, within TX73_002050 at 434.238 kb on - strand, within TX73_002050 at 434.256 kb on + strand, within TX73_002050 at 434.261 kb on + strand, within TX73_002050 at 434.261 kb on + strand, within TX73_002050 at 434.264 kb on - strand, within TX73_002050 at 434.269 kb on - strand, within TX73_002050 at 434.293 kb on - strand, within TX73_002050 at 434.295 kb on + strand, within TX73_002050 at 434.312 kb on + strand, within TX73_002050 at 434.320 kb on - strand, within TX73_002050 at 434.363 kb on - strand, within TX73_002050 at 434.381 kb on + strand, within TX73_002050 at 434.383 kb on - strand, within TX73_002050 at 434.383 kb on - strand, within TX73_002050 at 434.389 kb on - strand, within TX73_002050 at 434.443 kb on + strand at 434.453 kb on - strand at 434.453 kb on - strand at 434.488 kb on + strand at 434.524 kb on - strand, within TX73_002055 at 434.533 kb on - strand, within TX73_002055 at 434.601 kb on - strand, within TX73_002055 at 434.607 kb on - strand, within TX73_002055 at 434.611 kb on + strand, within TX73_002055 at 434.617 kb on - strand, within TX73_002055 at 434.630 kb on - strand, within TX73_002055 at 434.630 kb on - strand, within TX73_002055 at 434.656 kb on + strand, within TX73_002055 at 434.702 kb on - strand, within TX73_002055 at 434.709 kb on - strand, within TX73_002055 at 434.719 kb on - strand, within TX73_002055 at 434.732 kb on + strand, within TX73_002055 at 434.740 kb on - strand, within TX73_002055 at 434.751 kb on + strand, within TX73_002055 at 434.758 kb on + strand, within TX73_002055 at 434.766 kb on + strand, within TX73_002055 at 434.766 kb on + strand, within TX73_002055 at 434.766 kb on + strand, within TX73_002055 at 434.766 kb on + strand, within TX73_002055 at 434.771 kb on + strand, within TX73_002055 at 434.774 kb on - strand, within TX73_002055 at 434.774 kb on - strand, within TX73_002055 at 434.777 kb on + strand, within TX73_002055 at 434.777 kb on + strand, within TX73_002055 at 434.779 kb on - strand, within TX73_002055 at 434.786 kb on - strand, within TX73_002055 at 434.786 kb on - strand, within TX73_002055 at 434.786 kb on - strand, within TX73_002055 at 434.786 kb on - strand, within TX73_002055 at 434.786 kb on - strand, within TX73_002055 at 434.789 kb on + strand, within TX73_002055 at 434.810 kb on + strand, within TX73_002055 at 434.818 kb on - strand, within TX73_002055 at 434.872 kb on + strand, within TX73_002055 at 434.913 kb on + strand, within TX73_002055 at 434.913 kb on + strand, within TX73_002055 at 434.913 kb on + strand, within TX73_002055 at 434.913 kb on + strand, within TX73_002055 at 434.919 kb on - strand, within TX73_002055 at 434.921 kb on - strand, within TX73_002055 at 434.923 kb on + strand, within TX73_002055 at 434.931 kb on - strand, within TX73_002055 at 434.933 kb on + strand, within TX73_002055 at 434.933 kb on + strand, within TX73_002055 at 434.933 kb on + strand, within TX73_002055 at 434.942 kb on - strand, within TX73_002055 at 434.949 kb on + strand, within TX73_002055 at 434.957 kb on - strand, within TX73_002055 at 434.962 kb on - strand, within TX73_002055 at 434.976 kb on + strand, within TX73_002055 at 434.976 kb on + strand, within TX73_002055 at 434.976 kb on + strand, within TX73_002055 at 434.984 kb on - strand at 434.986 kb on + strand at 435.015 kb on + strand at 435.023 kb on - strand at 435.023 kb on - strand at 435.023 kb on - strand at 435.037 kb on + strand at 435.037 kb on + strand at 435.037 kb on + strand at 435.045 kb on - strand at 435.045 kb on - strand at 435.046 kb on - strand at 435.109 kb on + strand at 435.109 kb on + strand at 435.191 kb on + strand, within TX73_002060 at 435.213 kb on + strand, within TX73_002060 at 435.221 kb on - strand, within TX73_002060 at 435.228 kb on + strand, within TX73_002060 at 435.236 kb on - strand, within TX73_002060 at 435.245 kb on + strand, within TX73_002060 at 435.250 kb on + strand, within TX73_002060 at 435.253 kb on - strand, within TX73_002060 at 435.299 kb on + strand, within TX73_002060 at 435.345 kb on - strand, within TX73_002060 at 435.369 kb on - strand, within TX73_002060 at 435.373 kb on + strand, within TX73_002060 at 435.383 kb on + strand, within TX73_002060 at 435.383 kb on + strand, within TX73_002060 at 435.383 kb on + strand, within TX73_002060 at 435.391 kb on - strand, within TX73_002060 at 435.405 kb on - strand, within TX73_002060 at 435.489 kb on + strand, within TX73_002060 at 435.526 kb on + strand, within TX73_002060 at 435.528 kb on - strand, within TX73_002060 at 435.533 kb on + strand, within TX73_002060 at 435.536 kb on - strand, within TX73_002060 at 435.544 kb on + strand, within TX73_002060 at 435.641 kb on - strand, within TX73_002060 at 435.672 kb on + strand, within TX73_002060 at 435.695 kb on - strand, within TX73_002060 at 435.733 kb on + strand, within TX73_002060 at 435.733 kb on + strand, within TX73_002060 at 435.741 kb on - strand, within TX73_002060 at 435.741 kb on - strand, within TX73_002060 at 435.741 kb on - strand, within TX73_002060 at 435.753 kb on + strand, within TX73_002060 at 435.761 kb on + strand, within TX73_002060 at 435.763 kb on + strand, within TX73_002060 at 435.785 kb on + strand, within TX73_002060 at 435.787 kb on + strand, within TX73_002060 at 435.808 kb on + strand, within TX73_002060 at 435.810 kb on + strand, within TX73_002060 at 435.818 kb on - strand, within TX73_002060 at 435.830 kb on + strand, within TX73_002060 at 435.833 kb on - strand, within TX73_002060 at 435.838 kb on - strand, within TX73_002060 at 435.867 kb on - strand, within TX73_002060 at 435.876 kb on - strand, within TX73_002060 at 435.902 kb on - strand, within TX73_002060 at 435.949 kb on + strand, within TX73_002060 at 435.965 kb on - strand, within TX73_002060 at 435.979 kb on - strand, within TX73_002060 at 435.985 kb on + strand, within TX73_002060 at 435.985 kb on + strand, within TX73_002060 at 435.985 kb on + strand, within TX73_002060 at 435.993 kb on - strand, within TX73_002060 at 435.993 kb on - strand, within TX73_002060
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 433,691 - TX73_002045 0.67 +0.3 433,837 - TX73_002045 0.85 -0.3 433,837 - TX73_002045 0.85 +2.3 433,957 + -1.1 434,032 + TX73_002050 0.17 -1.8 434,050 + TX73_002050 0.21 -0.2 434,060 + TX73_002050 0.23 -1.6 434,060 - TX73_002050 0.23 -1.8 434,153 + TX73_002050 0.41 -3.8 434,161 - TX73_002050 0.43 -0.0 434,161 - TX73_002050 0.43 -0.4 434,161 - TX73_002050 0.43 -0.7 434,170 + TX73_002050 0.45 +0.2 434,175 + TX73_002050 0.46 -1.2 434,194 + TX73_002050 0.49 +1.5 434,199 + TX73_002050 0.50 -0.8 434,199 + TX73_002050 0.50 +0.4 434,199 + TX73_002050 0.50 +0.9 434,201 - TX73_002050 0.51 -0.9 434,202 - TX73_002050 0.51 -0.2 434,202 - TX73_002050 0.51 +1.0 434,202 - TX73_002050 0.51 -0.4 434,207 - TX73_002050 0.52 -0.1 434,225 + TX73_002050 0.55 +5.3 434,238 - TX73_002050 0.58 +0.7 434,256 + TX73_002050 0.62 +1.2 434,261 + TX73_002050 0.63 +0.4 434,261 + TX73_002050 0.63 +0.6 434,264 - TX73_002050 0.63 -2.7 434,269 - TX73_002050 0.64 -1.3 434,293 - TX73_002050 0.69 +0.4 434,295 + TX73_002050 0.69 +0.2 434,312 + TX73_002050 0.73 +1.6 434,320 - TX73_002050 0.74 -1.9 434,363 - TX73_002050 0.83 +0.1 434,381 + TX73_002050 0.87 +0.2 434,383 - TX73_002050 0.87 +0.7 434,383 - TX73_002050 0.87 -0.8 434,389 - TX73_002050 0.88 +0.6 434,443 + -0.8 434,453 - +0.8 434,453 - -3.0 434,488 + +1.0 434,524 - TX73_002055 0.13 +1.7 434,533 - TX73_002055 0.14 -0.1 434,601 - TX73_002055 0.26 -1.6 434,607 - TX73_002055 0.27 +1.1 434,611 + TX73_002055 0.28 +0.3 434,617 - TX73_002055 0.29 +0.8 434,630 - TX73_002055 0.31 -1.6 434,630 - TX73_002055 0.31 -0.5 434,656 + TX73_002055 0.35 -2.2 434,702 - TX73_002055 0.43 +0.1 434,709 - TX73_002055 0.44 -0.4 434,719 - TX73_002055 0.46 -1.0 434,732 + TX73_002055 0.48 +0.4 434,740 - TX73_002055 0.49 +0.5 434,751 + TX73_002055 0.51 +0.1 434,758 + TX73_002055 0.52 -1.4 434,766 + TX73_002055 0.54 -2.7 434,766 + TX73_002055 0.54 -1.2 434,766 + TX73_002055 0.54 +0.4 434,766 + TX73_002055 0.54 +1.9 434,771 + TX73_002055 0.55 +0.2 434,774 - TX73_002055 0.55 +0.1 434,774 - TX73_002055 0.55 -1.1 434,777 + TX73_002055 0.56 -2.9 434,777 + TX73_002055 0.56 -1.7 434,779 - TX73_002055 0.56 -2.3 434,786 - TX73_002055 0.57 +1.6 434,786 - TX73_002055 0.57 -0.8 434,786 - TX73_002055 0.57 +0.3 434,786 - TX73_002055 0.57 -0.2 434,786 - TX73_002055 0.57 -0.9 434,789 + TX73_002055 0.58 -0.9 434,810 + TX73_002055 0.61 +0.6 434,818 - TX73_002055 0.62 -1.4 434,872 + TX73_002055 0.72 -0.1 434,913 + TX73_002055 0.78 -0.0 434,913 + TX73_002055 0.78 -0.5 434,913 + TX73_002055 0.78 -0.8 434,913 + TX73_002055 0.78 -0.8 434,919 - TX73_002055 0.79 -1.9 434,921 - TX73_002055 0.80 +0.1 434,923 + TX73_002055 0.80 +2.1 434,931 - TX73_002055 0.81 -1.3 434,933 + TX73_002055 0.82 -0.3 434,933 + TX73_002055 0.82 +0.9 434,933 + TX73_002055 0.82 +1.0 434,942 - TX73_002055 0.83 -0.4 434,949 + TX73_002055 0.85 -1.4 434,957 - TX73_002055 0.86 +0.5 434,962 - TX73_002055 0.87 -0.2 434,976 + TX73_002055 0.89 -0.9 434,976 + TX73_002055 0.89 +0.9 434,976 + TX73_002055 0.89 -0.9 434,984 - -0.9 434,986 + +0.2 435,015 + -0.3 435,023 - -0.9 435,023 - -1.0 435,023 - -0.6 435,037 + +1.4 435,037 + +0.4 435,037 + +1.3 435,045 - -0.9 435,045 - -0.2 435,046 - -0.1 435,109 + +0.2 435,109 + +0.7 435,191 + TX73_002060 0.12 +0.7 435,213 + TX73_002060 0.14 +1.4 435,221 - TX73_002060 0.15 -0.4 435,228 + TX73_002060 0.15 -1.3 435,236 - TX73_002060 0.16 +0.9 435,245 + TX73_002060 0.17 -1.4 435,250 + TX73_002060 0.17 -3.8 435,253 - TX73_002060 0.17 +0.8 435,299 + TX73_002060 0.21 -0.8 435,345 - TX73_002060 0.25 +0.4 435,369 - TX73_002060 0.27 -0.3 435,373 + TX73_002060 0.27 -1.5 435,383 + TX73_002060 0.28 +0.0 435,383 + TX73_002060 0.28 -1.4 435,383 + TX73_002060 0.28 -0.7 435,391 - TX73_002060 0.29 +1.1 435,405 - TX73_002060 0.30 +0.5 435,489 + TX73_002060 0.37 +3.2 435,526 + TX73_002060 0.40 +0.7 435,528 - TX73_002060 0.40 -2.5 435,533 + TX73_002060 0.41 +0.9 435,536 - TX73_002060 0.41 +2.4 435,544 + TX73_002060 0.42 +0.6 435,641 - TX73_002060 0.50 -1.7 435,672 + TX73_002060 0.52 -1.1 435,695 - TX73_002060 0.54 -1.9 435,733 + TX73_002060 0.57 -2.7 435,733 + TX73_002060 0.57 +0.3 435,741 - TX73_002060 0.58 +1.7 435,741 - TX73_002060 0.58 -0.7 435,741 - TX73_002060 0.58 -1.3 435,753 + TX73_002060 0.59 +0.2 435,761 + TX73_002060 0.60 +0.4 435,763 + TX73_002060 0.60 -0.8 435,785 + TX73_002060 0.62 -2.4 435,787 + TX73_002060 0.62 -1.8 435,808 + TX73_002060 0.64 -1.3 435,810 + TX73_002060 0.64 -0.6 435,818 - TX73_002060 0.64 +0.8 435,830 + TX73_002060 0.65 +0.7 435,833 - TX73_002060 0.66 -1.0 435,838 - TX73_002060 0.66 -1.1 435,867 - TX73_002060 0.69 +1.1 435,876 - TX73_002060 0.69 +0.9 435,902 - TX73_002060 0.71 -1.1 435,949 + TX73_002060 0.75 -1.1 435,965 - TX73_002060 0.77 -1.5 435,979 - TX73_002060 0.78 -1.0 435,985 + TX73_002060 0.78 +0.2 435,985 + TX73_002060 0.78 -0.1 435,985 + TX73_002060 0.78 -2.7 435,993 - TX73_002060 0.79 -0.3 435,993 - TX73_002060 0.79 +0.4
Or see this region's nucleotide sequence