Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001080 and TX73_001085 overlap by 4 nucleotides TX73_001085 and TX73_001090 are separated by 28 nucleotides TX73_001090 and TX73_001095 are separated by 363 nucleotides
TX73_001080: TX73_001080 - septation protein A, at 231,999 to 232,616
_001080
TX73_001085: TX73_001085 - signal recognition particle-docking protein FtsY, at 232,613 to 233,560
_001085
TX73_001090: TX73_001090 - RNA pseudouridine synthase, at 233,589 to 234,563
_001090
TX73_001095: TX73_001095 - acetate--CoA ligase, at 234,927 to 236,879
_001095
Position (kb) 233
234
235 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 232.602 kb on - strand at 232.602 kb on - strand at 232.602 kb on - strand at 233.558 kb on + strand at 233.561 kb on - strand at 233.568 kb on - strand at 233.570 kb on + strand at 233.570 kb on + strand at 233.607 kb on + strand at 233.615 kb on - strand at 233.633 kb on - strand at 233.643 kb on + strand at 233.651 kb on - strand at 233.660 kb on + strand at 233.660 kb on + strand at 233.663 kb on - strand at 233.663 kb on - strand at 233.668 kb on - strand at 233.670 kb on + strand at 233.679 kb on - strand at 233.679 kb on - strand at 233.709 kb on - strand, within TX73_001090 at 233.720 kb on + strand, within TX73_001090 at 233.721 kb on + strand, within TX73_001090 at 233.721 kb on + strand, within TX73_001090 at 233.728 kb on - strand, within TX73_001090 at 233.731 kb on + strand, within TX73_001090 at 233.737 kb on + strand, within TX73_001090 at 233.739 kb on - strand, within TX73_001090 at 233.739 kb on - strand, within TX73_001090 at 233.745 kb on - strand, within TX73_001090 at 233.762 kb on + strand, within TX73_001090 at 233.767 kb on + strand, within TX73_001090 at 233.777 kb on - strand, within TX73_001090 at 233.782 kb on + strand, within TX73_001090 at 233.782 kb on + strand, within TX73_001090 at 233.790 kb on - strand, within TX73_001090 at 233.822 kb on - strand, within TX73_001090 at 233.824 kb on + strand, within TX73_001090 at 233.824 kb on + strand, within TX73_001090 at 233.826 kb on - strand, within TX73_001090 at 233.832 kb on - strand, within TX73_001090 at 233.843 kb on + strand, within TX73_001090 at 233.844 kb on + strand, within TX73_001090 at 233.862 kb on - strand, within TX73_001090 at 233.868 kb on - strand, within TX73_001090 at 233.902 kb on + strand, within TX73_001090 at 233.934 kb on + strand, within TX73_001090 at 233.934 kb on + strand, within TX73_001090 at 233.942 kb on - strand, within TX73_001090 at 233.949 kb on + strand, within TX73_001090 at 233.966 kb on + strand, within TX73_001090 at 233.974 kb on - strand, within TX73_001090 at 233.974 kb on - strand, within TX73_001090 at 233.986 kb on + strand, within TX73_001090 at 234.001 kb on + strand, within TX73_001090 at 234.009 kb on - strand, within TX73_001090 at 234.017 kb on - strand, within TX73_001090 at 234.022 kb on - strand, within TX73_001090 at 234.036 kb on + strand, within TX73_001090 at 234.044 kb on - strand, within TX73_001090 at 234.046 kb on + strand, within TX73_001090 at 234.046 kb on + strand, within TX73_001090 at 234.047 kb on + strand, within TX73_001090 at 234.088 kb on + strand, within TX73_001090 at 234.093 kb on + strand, within TX73_001090 at 234.093 kb on + strand, within TX73_001090 at 234.127 kb on - strand, within TX73_001090 at 234.129 kb on - strand, within TX73_001090 at 234.132 kb on - strand, within TX73_001090 at 234.132 kb on - strand, within TX73_001090 at 234.134 kb on - strand, within TX73_001090 at 234.136 kb on + strand, within TX73_001090 at 234.137 kb on - strand, within TX73_001090 at 234.145 kb on + strand, within TX73_001090 at 234.145 kb on + strand, within TX73_001090 at 234.145 kb on + strand, within TX73_001090 at 234.145 kb on + strand, within TX73_001090 at 234.145 kb on + strand, within TX73_001090 at 234.153 kb on - strand, within TX73_001090 at 234.153 kb on - strand, within TX73_001090 at 234.153 kb on - strand, within TX73_001090 at 234.153 kb on - strand, within TX73_001090 at 234.153 kb on - strand, within TX73_001090 at 234.153 kb on - strand, within TX73_001090 at 234.155 kb on - strand, within TX73_001090 at 234.158 kb on + strand, within TX73_001090 at 234.180 kb on - strand, within TX73_001090 at 234.180 kb on - strand, within TX73_001090 at 234.180 kb on - strand, within TX73_001090 at 234.197 kb on - strand, within TX73_001090 at 234.201 kb on - strand, within TX73_001090 at 234.201 kb on - strand, within TX73_001090 at 234.201 kb on - strand, within TX73_001090 at 234.202 kb on - strand, within TX73_001090 at 234.202 kb on - strand, within TX73_001090 at 234.202 kb on - strand, within TX73_001090 at 234.202 kb on - strand, within TX73_001090 at 234.202 kb on - strand, within TX73_001090 at 234.202 kb on - strand, within TX73_001090 at 234.204 kb on + strand, within TX73_001090 at 234.223 kb on + strand, within TX73_001090 at 234.224 kb on + strand, within TX73_001090 at 234.234 kb on + strand, within TX73_001090 at 234.234 kb on + strand, within TX73_001090 at 234.234 kb on + strand, within TX73_001090 at 234.234 kb on + strand, within TX73_001090 at 234.242 kb on - strand, within TX73_001090 at 234.242 kb on - strand, within TX73_001090 at 234.242 kb on - strand, within TX73_001090 at 234.284 kb on + strand, within TX73_001090 at 234.298 kb on + strand, within TX73_001090 at 234.306 kb on + strand, within TX73_001090 at 234.313 kb on + strand, within TX73_001090 at 234.316 kb on - strand, within TX73_001090 at 234.330 kb on - strand, within TX73_001090 at 234.330 kb on - strand, within TX73_001090 at 234.339 kb on + strand, within TX73_001090 at 234.339 kb on + strand, within TX73_001090 at 234.339 kb on + strand, within TX73_001090 at 234.348 kb on + strand, within TX73_001090 at 234.348 kb on + strand, within TX73_001090 at 234.352 kb on + strand, within TX73_001090 at 234.353 kb on + strand, within TX73_001090 at 234.353 kb on + strand, within TX73_001090 at 234.359 kb on + strand, within TX73_001090 at 234.377 kb on + strand, within TX73_001090 at 234.385 kb on - strand, within TX73_001090 at 234.385 kb on - strand, within TX73_001090 at 234.390 kb on - strand, within TX73_001090 at 234.402 kb on + strand, within TX73_001090 at 234.407 kb on + strand, within TX73_001090 at 234.422 kb on + strand, within TX73_001090 at 234.422 kb on + strand, within TX73_001090 at 234.430 kb on - strand, within TX73_001090 at 234.444 kb on + strand, within TX73_001090 at 234.469 kb on - strand at 234.474 kb on - strand at 234.502 kb on - strand at 234.505 kb on - strand at 234.545 kb on + strand at 234.557 kb on + strand at 234.563 kb on + strand at 234.565 kb on - strand at 234.570 kb on + strand at 234.572 kb on - strand at 234.578 kb on - strand at 234.578 kb on - strand at 234.593 kb on + strand at 234.616 kb on - strand at 234.621 kb on + strand at 234.636 kb on + strand at 234.638 kb on + strand at 234.643 kb on + strand at 234.678 kb on + strand at 234.683 kb on - strand at 234.757 kb on + strand at 234.757 kb on + strand at 234.763 kb on - strand at 234.765 kb on - strand at 234.776 kb on + strand at 234.778 kb on + strand at 234.786 kb on - strand at 234.796 kb on - strand at 234.802 kb on - strand at 234.828 kb on + strand at 234.836 kb on + strand at 234.836 kb on - strand at 234.836 kb on - strand at 234.837 kb on - strand at 234.838 kb on - strand at 234.938 kb on + strand at 234.938 kb on + strand at 234.959 kb on - strand at 235.057 kb on - strand at 235.057 kb on - strand at 235.074 kb on - strand at 235.075 kb on - strand at 235.107 kb on + strand at 235.155 kb on + strand, within TX73_001095 at 235.155 kb on + strand, within TX73_001095 at 235.155 kb on + strand, within TX73_001095 at 235.155 kb on + strand, within TX73_001095 at 235.155 kb on + strand, within TX73_001095 at 235.155 kb on + strand, within TX73_001095 at 235.177 kb on + strand, within TX73_001095 at 235.197 kb on - strand, within TX73_001095 at 235.216 kb on - strand, within TX73_001095 at 235.235 kb on + strand, within TX73_001095 at 235.241 kb on - strand, within TX73_001095 at 235.243 kb on + strand, within TX73_001095 at 235.251 kb on - strand, within TX73_001095 at 235.251 kb on - strand, within TX73_001095 at 235.252 kb on + strand, within TX73_001095 at 235.274 kb on + strand, within TX73_001095 at 235.310 kb on + strand, within TX73_001095 at 235.318 kb on - strand, within TX73_001095 at 235.324 kb on - strand, within TX73_001095 at 235.327 kb on + strand, within TX73_001095 at 235.328 kb on - strand, within TX73_001095 at 235.368 kb on + strand, within TX73_001095 at 235.368 kb on + strand, within TX73_001095 at 235.368 kb on + strand, within TX73_001095 at 235.376 kb on - strand, within TX73_001095 at 235.378 kb on - strand, within TX73_001095 at 235.390 kb on + strand, within TX73_001095 at 235.393 kb on - strand, within TX73_001095 at 235.399 kb on + strand, within TX73_001095 at 235.399 kb on + strand, within TX73_001095 at 235.407 kb on + strand, within TX73_001095 at 235.414 kb on - strand, within TX73_001095 at 235.433 kb on - strand, within TX73_001095 at 235.433 kb on - strand, within TX73_001095 at 235.482 kb on + strand, within TX73_001095 at 235.541 kb on + strand, within TX73_001095 at 235.547 kb on + strand, within TX73_001095 at 235.554 kb on + strand, within TX73_001095
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 232,602 - +2.1 232,602 - +0.2 232,602 - -0.6 233,558 + -1.9 233,561 - +0.3 233,568 - -0.4 233,570 + +2.3 233,570 + -1.3 233,607 + -1.7 233,615 - +0.0 233,633 - -1.1 233,643 + +0.7 233,651 - +1.1 233,660 + +0.3 233,660 + -0.3 233,663 - +0.3 233,663 - -0.4 233,668 - +0.1 233,670 + +3.5 233,679 - -0.0 233,679 - -1.5 233,709 - TX73_001090 0.12 -1.0 233,720 + TX73_001090 0.13 -0.2 233,721 + TX73_001090 0.14 +0.1 233,721 + TX73_001090 0.14 -1.4 233,728 - TX73_001090 0.14 +1.2 233,731 + TX73_001090 0.15 +0.4 233,737 + TX73_001090 0.15 -2.3 233,739 - TX73_001090 0.15 -1.2 233,739 - TX73_001090 0.15 +0.3 233,745 - TX73_001090 0.16 -2.0 233,762 + TX73_001090 0.18 -1.9 233,767 + TX73_001090 0.18 +1.3 233,777 - TX73_001090 0.19 +0.8 233,782 + TX73_001090 0.20 +0.7 233,782 + TX73_001090 0.20 -1.2 233,790 - TX73_001090 0.21 -2.0 233,822 - TX73_001090 0.24 -2.6 233,824 + TX73_001090 0.24 +0.4 233,824 + TX73_001090 0.24 -0.4 233,826 - TX73_001090 0.24 -1.1 233,832 - TX73_001090 0.25 -0.5 233,843 + TX73_001090 0.26 +0.6 233,844 + TX73_001090 0.26 -3.7 233,862 - TX73_001090 0.28 -0.8 233,868 - TX73_001090 0.29 +2.1 233,902 + TX73_001090 0.32 +0.7 233,934 + TX73_001090 0.35 +1.4 233,934 + TX73_001090 0.35 -1.3 233,942 - TX73_001090 0.36 +1.2 233,949 + TX73_001090 0.37 +0.1 233,966 + TX73_001090 0.39 +0.3 233,974 - TX73_001090 0.39 +1.3 233,974 - TX73_001090 0.39 +0.3 233,986 + TX73_001090 0.41 -1.0 234,001 + TX73_001090 0.42 -0.6 234,009 - TX73_001090 0.43 +0.5 234,017 - TX73_001090 0.44 -0.8 234,022 - TX73_001090 0.44 +0.0 234,036 + TX73_001090 0.46 +0.1 234,044 - TX73_001090 0.47 +0.0 234,046 + TX73_001090 0.47 +0.3 234,046 + TX73_001090 0.47 -2.6 234,047 + TX73_001090 0.47 -0.7 234,088 + TX73_001090 0.51 -1.9 234,093 + TX73_001090 0.52 +0.3 234,093 + TX73_001090 0.52 +1.1 234,127 - TX73_001090 0.55 -1.6 234,129 - TX73_001090 0.55 -0.9 234,132 - TX73_001090 0.56 -0.8 234,132 - TX73_001090 0.56 -2.6 234,134 - TX73_001090 0.56 -0.6 234,136 + TX73_001090 0.56 +0.2 234,137 - TX73_001090 0.56 -0.2 234,145 + TX73_001090 0.57 -2.4 234,145 + TX73_001090 0.57 +0.2 234,145 + TX73_001090 0.57 -1.3 234,145 + TX73_001090 0.57 -0.7 234,145 + TX73_001090 0.57 -0.4 234,153 - TX73_001090 0.58 -0.2 234,153 - TX73_001090 0.58 -1.2 234,153 - TX73_001090 0.58 +1.8 234,153 - TX73_001090 0.58 -0.9 234,153 - TX73_001090 0.58 -2.0 234,153 - TX73_001090 0.58 -2.0 234,155 - TX73_001090 0.58 -1.3 234,158 + TX73_001090 0.58 -1.4 234,180 - TX73_001090 0.61 +0.2 234,180 - TX73_001090 0.61 -1.4 234,180 - TX73_001090 0.61 +1.3 234,197 - TX73_001090 0.62 +0.4 234,201 - TX73_001090 0.63 +0.7 234,201 - TX73_001090 0.63 -0.3 234,201 - TX73_001090 0.63 -0.7 234,202 - TX73_001090 0.63 +0.6 234,202 - TX73_001090 0.63 +0.4 234,202 - TX73_001090 0.63 -1.2 234,202 - TX73_001090 0.63 -3.8 234,202 - TX73_001090 0.63 +0.8 234,202 - TX73_001090 0.63 -0.3 234,204 + TX73_001090 0.63 -3.3 234,223 + TX73_001090 0.65 -0.6 234,224 + TX73_001090 0.65 +1.3 234,234 + TX73_001090 0.66 +1.6 234,234 + TX73_001090 0.66 +0.0 234,234 + TX73_001090 0.66 -0.6 234,234 + TX73_001090 0.66 -1.4 234,242 - TX73_001090 0.67 +2.1 234,242 - TX73_001090 0.67 -1.2 234,242 - TX73_001090 0.67 +0.3 234,284 + TX73_001090 0.71 -1.5 234,298 + TX73_001090 0.73 +1.7 234,306 + TX73_001090 0.74 -0.9 234,313 + TX73_001090 0.74 -1.4 234,316 - TX73_001090 0.75 -0.0 234,330 - TX73_001090 0.76 -1.4 234,330 - TX73_001090 0.76 +1.1 234,339 + TX73_001090 0.77 -0.6 234,339 + TX73_001090 0.77 +0.7 234,339 + TX73_001090 0.77 +1.3 234,348 + TX73_001090 0.78 -1.6 234,348 + TX73_001090 0.78 -0.2 234,352 + TX73_001090 0.78 -2.6 234,353 + TX73_001090 0.78 -0.6 234,353 + TX73_001090 0.78 -1.4 234,359 + TX73_001090 0.79 +0.3 234,377 + TX73_001090 0.81 -1.3 234,385 - TX73_001090 0.82 +0.1 234,385 - TX73_001090 0.82 -0.3 234,390 - TX73_001090 0.82 +1.1 234,402 + TX73_001090 0.83 -0.7 234,407 + TX73_001090 0.84 -0.4 234,422 + TX73_001090 0.85 +1.2 234,422 + TX73_001090 0.85 -0.5 234,430 - TX73_001090 0.86 -0.1 234,444 + TX73_001090 0.88 -0.0 234,469 - -1.1 234,474 - -0.6 234,502 - -0.1 234,505 - -2.3 234,545 + +0.4 234,557 + -1.6 234,563 + +1.1 234,565 - -1.8 234,570 + +1.3 234,572 - +2.4 234,578 - +1.5 234,578 - -0.7 234,593 + +1.5 234,616 - +0.8 234,621 + +0.3 234,636 + +0.6 234,638 + -1.8 234,643 + +1.2 234,678 + -0.5 234,683 - -1.6 234,757 + +2.4 234,757 + +1.5 234,763 - +0.6 234,765 - +0.4 234,776 + +0.7 234,778 + -0.8 234,786 - +1.3 234,796 - +0.3 234,802 - -0.1 234,828 + -0.5 234,836 + -0.9 234,836 - -0.2 234,836 - +0.2 234,837 - +0.7 234,838 - +0.2 234,938 + -1.5 234,938 + -0.1 234,959 - -1.2 235,057 - -0.9 235,057 - -1.5 235,074 - +1.0 235,075 - -0.8 235,107 + +1.2 235,155 + TX73_001095 0.12 +0.7 235,155 + TX73_001095 0.12 +0.3 235,155 + TX73_001095 0.12 -1.9 235,155 + TX73_001095 0.12 +2.0 235,155 + TX73_001095 0.12 -0.6 235,155 + TX73_001095 0.12 +0.1 235,177 + TX73_001095 0.13 -1.4 235,197 - TX73_001095 0.14 +1.2 235,216 - TX73_001095 0.15 +0.3 235,235 + TX73_001095 0.16 +0.3 235,241 - TX73_001095 0.16 -0.6 235,243 + TX73_001095 0.16 +0.3 235,251 - TX73_001095 0.17 -2.6 235,251 - TX73_001095 0.17 +2.0 235,252 + TX73_001095 0.17 -0.7 235,274 + TX73_001095 0.18 -0.6 235,310 + TX73_001095 0.20 -1.7 235,318 - TX73_001095 0.20 -0.2 235,324 - TX73_001095 0.20 -1.4 235,327 + TX73_001095 0.20 -0.3 235,328 - TX73_001095 0.21 +2.8 235,368 + TX73_001095 0.23 -0.5 235,368 + TX73_001095 0.23 +1.8 235,368 + TX73_001095 0.23 +0.9 235,376 - TX73_001095 0.23 -0.7 235,378 - TX73_001095 0.23 +1.2 235,390 + TX73_001095 0.24 +1.2 235,393 - TX73_001095 0.24 -0.1 235,399 + TX73_001095 0.24 -0.3 235,399 + TX73_001095 0.24 +0.6 235,407 + TX73_001095 0.25 -0.3 235,414 - TX73_001095 0.25 +0.7 235,433 - TX73_001095 0.26 +1.7 235,433 - TX73_001095 0.26 -0.4 235,482 + TX73_001095 0.28 +1.1 235,541 + TX73_001095 0.31 +1.3 235,547 + TX73_001095 0.32 +2.1 235,554 + TX73_001095 0.32 +0.2
Or see this region's nucleotide sequence