Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024910 and TX73_024915 are separated by 19 nucleotides TX73_024915 and TX73_024920 overlap by 4 nucleotides TX73_024920 and TX73_024925 are separated by 41 nucleotides TX73_024925 and TX73_024930 are separated by 46 nucleotides
TX73_024910: TX73_024910 - cytochrome ubiquinol oxidase subunit I, at 5,411,182 to 5,412,588
_024910
TX73_024915: TX73_024915 - cytochrome d ubiquinol oxidase subunit II, at 5,412,608 to 5,413,612
_024915
TX73_024920: TX73_024920 - DUF2474 domain-containing protein, at 5,413,609 to 5,413,740
_024920
TX73_024925: TX73_024925 - L,D-transpeptidase, at 5,413,782 to 5,414,375
_024925
TX73_024930: TX73_024930 - amino acid ABC transporter substrate-binding protein, at 5,414,422 to 5,415,456
_024930
Position (kb) 5412
5413
5414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5411.654 kb on - strand, within TX73_024910 at 5411.656 kb on + strand, within TX73_024910 at 5411.665 kb on - strand, within TX73_024910 at 5411.685 kb on + strand, within TX73_024910 at 5411.735 kb on + strand, within TX73_024910 at 5411.756 kb on - strand, within TX73_024910 at 5411.769 kb on - strand, within TX73_024910 at 5411.798 kb on + strand, within TX73_024910 at 5411.816 kb on + strand, within TX73_024910 at 5411.816 kb on + strand, within TX73_024910 at 5411.920 kb on - strand, within TX73_024910 at 5411.921 kb on + strand, within TX73_024910 at 5411.928 kb on + strand, within TX73_024910 at 5411.937 kb on + strand, within TX73_024910 at 5411.965 kb on + strand, within TX73_024910 at 5411.965 kb on + strand, within TX73_024910 at 5411.982 kb on - strand, within TX73_024910 at 5411.989 kb on + strand, within TX73_024910 at 5411.994 kb on + strand, within TX73_024910 at 5412.008 kb on + strand, within TX73_024910 at 5412.013 kb on + strand, within TX73_024910 at 5412.013 kb on + strand, within TX73_024910 at 5412.021 kb on - strand, within TX73_024910 at 5412.033 kb on + strand, within TX73_024910 at 5412.041 kb on - strand, within TX73_024910 at 5412.081 kb on - strand, within TX73_024910 at 5412.113 kb on - strand, within TX73_024910 at 5412.118 kb on - strand, within TX73_024910 at 5412.118 kb on - strand, within TX73_024910 at 5412.149 kb on + strand, within TX73_024910 at 5412.156 kb on - strand, within TX73_024910 at 5412.167 kb on - strand, within TX73_024910 at 5412.207 kb on + strand, within TX73_024910 at 5412.212 kb on + strand, within TX73_024910 at 5412.214 kb on - strand, within TX73_024910 at 5412.220 kb on - strand, within TX73_024910 at 5412.261 kb on - strand, within TX73_024910 at 5412.264 kb on - strand, within TX73_024910 at 5412.273 kb on + strand, within TX73_024910 at 5412.347 kb on - strand, within TX73_024910 at 5412.368 kb on + strand, within TX73_024910 at 5412.382 kb on - strand, within TX73_024910 at 5412.399 kb on + strand, within TX73_024910 at 5412.408 kb on - strand, within TX73_024910 at 5412.422 kb on + strand, within TX73_024910 at 5412.422 kb on + strand, within TX73_024910 at 5412.430 kb on - strand, within TX73_024910 at 5412.430 kb on - strand, within TX73_024910 at 5412.443 kb on - strand, within TX73_024910 at 5412.447 kb on + strand, within TX73_024910 at 5412.455 kb on - strand at 5412.462 kb on + strand at 5412.462 kb on + strand at 5412.527 kb on + strand at 5412.592 kb on + strand at 5412.592 kb on + strand at 5412.600 kb on - strand at 5412.607 kb on - strand at 5412.607 kb on - strand at 5412.611 kb on + strand at 5412.612 kb on - strand at 5412.612 kb on - strand at 5412.619 kb on - strand at 5412.619 kb on - strand at 5412.648 kb on + strand at 5412.656 kb on + strand at 5412.661 kb on + strand at 5412.664 kb on - strand at 5412.681 kb on - strand at 5412.689 kb on - strand at 5412.689 kb on - strand at 5412.689 kb on - strand at 5412.715 kb on + strand, within TX73_024915 at 5412.715 kb on + strand, within TX73_024915 at 5412.758 kb on + strand, within TX73_024915 at 5412.794 kb on - strand, within TX73_024915 at 5412.799 kb on - strand, within TX73_024915 at 5412.809 kb on - strand, within TX73_024915 at 5412.829 kb on + strand, within TX73_024915 at 5412.834 kb on + strand, within TX73_024915 at 5412.837 kb on - strand, within TX73_024915 at 5412.837 kb on - strand, within TX73_024915 at 5412.837 kb on - strand, within TX73_024915 at 5412.856 kb on + strand, within TX73_024915 at 5412.883 kb on - strand, within TX73_024915 at 5412.885 kb on + strand, within TX73_024915 at 5412.952 kb on - strand, within TX73_024915 at 5412.959 kb on - strand, within TX73_024915 at 5412.969 kb on + strand, within TX73_024915 at 5413.015 kb on + strand, within TX73_024915 at 5413.016 kb on - strand, within TX73_024915 at 5413.023 kb on - strand, within TX73_024915 at 5413.023 kb on - strand, within TX73_024915 at 5413.023 kb on - strand, within TX73_024915 at 5413.038 kb on - strand, within TX73_024915 at 5413.076 kb on + strand, within TX73_024915 at 5413.076 kb on - strand, within TX73_024915 at 5413.082 kb on + strand, within TX73_024915 at 5413.113 kb on + strand, within TX73_024915 at 5413.119 kb on - strand, within TX73_024915 at 5413.123 kb on + strand, within TX73_024915 at 5413.309 kb on + strand, within TX73_024915 at 5413.310 kb on - strand, within TX73_024915 at 5413.325 kb on + strand, within TX73_024915 at 5413.396 kb on + strand, within TX73_024915 at 5413.404 kb on - strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.413 kb on + strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.459 kb on + strand, within TX73_024915 at 5413.484 kb on + strand, within TX73_024915 at 5413.535 kb on - strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.571 kb on - strand at 5413.589 kb on + strand at 5413.615 kb on - strand at 5413.644 kb on - strand, within TX73_024920 at 5413.651 kb on + strand, within TX73_024920 at 5413.729 kb on + strand at 5413.734 kb on + strand at 5413.734 kb on + strand at 5413.742 kb on - strand at 5413.742 kb on - strand at 5413.804 kb on + strand at 5413.824 kb on + strand at 5413.837 kb on - strand at 5413.837 kb on - strand at 5413.858 kb on - strand, within TX73_024925 at 5413.890 kb on - strand, within TX73_024925 at 5413.962 kb on - strand, within TX73_024925 at 5413.979 kb on + strand, within TX73_024925 at 5413.988 kb on - strand, within TX73_024925 at 5413.999 kb on + strand, within TX73_024925 at 5413.999 kb on + strand, within TX73_024925 at 5413.999 kb on + strand, within TX73_024925 at 5414.011 kb on - strand, within TX73_024925 at 5414.029 kb on - strand, within TX73_024925 at 5414.033 kb on + strand, within TX73_024925 at 5414.054 kb on - strand, within TX73_024925 at 5414.056 kb on + strand, within TX73_024925 at 5414.061 kb on + strand, within TX73_024925 at 5414.069 kb on - strand, within TX73_024925 at 5414.079 kb on + strand, within TX73_024925 at 5414.081 kb on + strand, within TX73_024925 at 5414.081 kb on + strand, within TX73_024925 at 5414.141 kb on + strand, within TX73_024925 at 5414.147 kb on + strand, within TX73_024925 at 5414.213 kb on + strand, within TX73_024925 at 5414.239 kb on + strand, within TX73_024925 at 5414.247 kb on - strand, within TX73_024925 at 5414.284 kb on + strand, within TX73_024925 at 5414.284 kb on + strand, within TX73_024925 at 5414.307 kb on - strand, within TX73_024925 at 5414.307 kb on - strand, within TX73_024925 at 5414.338 kb on + strand at 5414.346 kb on - strand at 5414.370 kb on - strand at 5414.436 kb on + strand at 5414.437 kb on + strand at 5414.498 kb on + strand at 5414.506 kb on - strand at 5414.506 kb on - strand at 5414.516 kb on - strand at 5414.521 kb on + strand at 5414.548 kb on + strand, within TX73_024930 at 5414.548 kb on + strand, within TX73_024930 at 5414.551 kb on + strand, within TX73_024930 at 5414.554 kb on - strand, within TX73_024930 at 5414.556 kb on - strand, within TX73_024930 at 5414.556 kb on - strand, within TX73_024930 at 5414.556 kb on - strand, within TX73_024930 at 5414.577 kb on + strand, within TX73_024930 at 5414.606 kb on - strand, within TX73_024930
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 5,411,654 - TX73_024910 0.34 +0.9 5,411,656 + TX73_024910 0.34 +0.9 5,411,665 - TX73_024910 0.34 +0.5 5,411,685 + TX73_024910 0.36 +0.1 5,411,735 + TX73_024910 0.39 +1.6 5,411,756 - TX73_024910 0.41 -3.7 5,411,769 - TX73_024910 0.42 -0.0 5,411,798 + TX73_024910 0.44 -0.5 5,411,816 + TX73_024910 0.45 +0.4 5,411,816 + TX73_024910 0.45 +0.8 5,411,920 - TX73_024910 0.52 -0.2 5,411,921 + TX73_024910 0.53 -0.3 5,411,928 + TX73_024910 0.53 +0.1 5,411,937 + TX73_024910 0.54 -1.5 5,411,965 + TX73_024910 0.56 -2.0 5,411,965 + TX73_024910 0.56 -0.8 5,411,982 - TX73_024910 0.57 -0.6 5,411,989 + TX73_024910 0.57 -0.1 5,411,994 + TX73_024910 0.58 +0.8 5,412,008 + TX73_024910 0.59 -1.3 5,412,013 + TX73_024910 0.59 +0.1 5,412,013 + TX73_024910 0.59 +0.4 5,412,021 - TX73_024910 0.60 +0.2 5,412,033 + TX73_024910 0.60 -1.9 5,412,041 - TX73_024910 0.61 -0.1 5,412,081 - TX73_024910 0.64 +0.7 5,412,113 - TX73_024910 0.66 -1.6 5,412,118 - TX73_024910 0.67 -0.5 5,412,118 - TX73_024910 0.67 -0.4 5,412,149 + TX73_024910 0.69 +0.9 5,412,156 - TX73_024910 0.69 -1.2 5,412,167 - TX73_024910 0.70 +0.8 5,412,207 + TX73_024910 0.73 +0.1 5,412,212 + TX73_024910 0.73 +0.2 5,412,214 - TX73_024910 0.73 +1.1 5,412,220 - TX73_024910 0.74 -1.8 5,412,261 - TX73_024910 0.77 -0.2 5,412,264 - TX73_024910 0.77 -0.9 5,412,273 + TX73_024910 0.78 -0.2 5,412,347 - TX73_024910 0.83 -0.3 5,412,368 + TX73_024910 0.84 +0.4 5,412,382 - TX73_024910 0.85 -0.3 5,412,399 + TX73_024910 0.86 -0.3 5,412,408 - TX73_024910 0.87 -0.9 5,412,422 + TX73_024910 0.88 -1.6 5,412,422 + TX73_024910 0.88 -0.4 5,412,430 - TX73_024910 0.89 -0.0 5,412,430 - TX73_024910 0.89 +1.0 5,412,443 - TX73_024910 0.90 -0.4 5,412,447 + TX73_024910 0.90 -3.2 5,412,455 - -0.5 5,412,462 + -0.6 5,412,462 + -0.8 5,412,527 + -2.8 5,412,592 + +1.0 5,412,592 + -1.9 5,412,600 - +0.5 5,412,607 - -0.7 5,412,607 - +0.5 5,412,611 + +1.0 5,412,612 - -1.1 5,412,612 - +3.5 5,412,619 - +0.3 5,412,619 - -0.9 5,412,648 + +0.1 5,412,656 + -0.4 5,412,661 + +0.4 5,412,664 - +0.5 5,412,681 - -1.3 5,412,689 - +0.6 5,412,689 - -0.8 5,412,689 - -1.2 5,412,715 + TX73_024915 0.11 -0.3 5,412,715 + TX73_024915 0.11 +0.1 5,412,758 + TX73_024915 0.15 +1.1 5,412,794 - TX73_024915 0.19 -0.2 5,412,799 - TX73_024915 0.19 -1.4 5,412,809 - TX73_024915 0.20 -0.9 5,412,829 + TX73_024915 0.22 +2.3 5,412,834 + TX73_024915 0.22 +1.3 5,412,837 - TX73_024915 0.23 -0.9 5,412,837 - TX73_024915 0.23 +0.5 5,412,837 - TX73_024915 0.23 +1.4 5,412,856 + TX73_024915 0.25 +0.5 5,412,883 - TX73_024915 0.27 -0.3 5,412,885 + TX73_024915 0.28 -0.5 5,412,952 - TX73_024915 0.34 -0.6 5,412,959 - TX73_024915 0.35 -0.5 5,412,969 + TX73_024915 0.36 +0.1 5,413,015 + TX73_024915 0.40 -0.7 5,413,016 - TX73_024915 0.41 -0.2 5,413,023 - TX73_024915 0.41 -3.3 5,413,023 - TX73_024915 0.41 +0.6 5,413,023 - TX73_024915 0.41 +1.0 5,413,038 - TX73_024915 0.43 -0.6 5,413,076 + TX73_024915 0.47 -0.7 5,413,076 - TX73_024915 0.47 +0.5 5,413,082 + TX73_024915 0.47 -0.6 5,413,113 + TX73_024915 0.50 -1.4 5,413,119 - TX73_024915 0.51 -1.8 5,413,123 + TX73_024915 0.51 +0.6 5,413,309 + TX73_024915 0.70 -0.9 5,413,310 - TX73_024915 0.70 +0.1 5,413,325 + TX73_024915 0.71 -0.2 5,413,396 + TX73_024915 0.78 -0.3 5,413,404 - TX73_024915 0.79 +1.9 5,413,411 + TX73_024915 0.80 -0.8 5,413,411 + TX73_024915 0.80 +1.4 5,413,411 + TX73_024915 0.80 +1.5 5,413,411 + TX73_024915 0.80 -2.8 5,413,411 + TX73_024915 0.80 -1.6 5,413,411 + TX73_024915 0.80 +1.0 5,413,413 + TX73_024915 0.80 -3.3 5,413,419 - TX73_024915 0.81 +1.1 5,413,419 - TX73_024915 0.81 +0.1 5,413,419 - TX73_024915 0.81 -0.2 5,413,419 - TX73_024915 0.81 +1.1 5,413,419 - TX73_024915 0.81 -0.7 5,413,419 - TX73_024915 0.81 -0.1 5,413,419 - TX73_024915 0.81 -0.8 5,413,419 - TX73_024915 0.81 +0.0 5,413,419 - TX73_024915 0.81 -0.9 5,413,459 + TX73_024915 0.85 +2.6 5,413,484 + TX73_024915 0.87 -0.8 5,413,535 - +1.0 5,413,546 + -0.8 5,413,546 + -2.0 5,413,546 + +0.2 5,413,546 + -2.8 5,413,546 + -0.8 5,413,554 - -1.4 5,413,554 - +0.3 5,413,554 - +0.4 5,413,554 - -0.7 5,413,554 - -0.6 5,413,571 - -0.9 5,413,589 + +0.2 5,413,615 - +1.5 5,413,644 - TX73_024920 0.27 -1.9 5,413,651 + TX73_024920 0.32 -0.5 5,413,729 + +0.4 5,413,734 + +1.6 5,413,734 + -0.4 5,413,742 - -0.8 5,413,742 - -0.7 5,413,804 + -1.8 5,413,824 + +1.5 5,413,837 - -1.5 5,413,837 - +0.8 5,413,858 - TX73_024925 0.13 +1.3 5,413,890 - TX73_024925 0.18 +0.4 5,413,962 - TX73_024925 0.30 +0.3 5,413,979 + TX73_024925 0.33 -0.6 5,413,988 - TX73_024925 0.35 +0.5 5,413,999 + TX73_024925 0.37 +0.9 5,413,999 + TX73_024925 0.37 +0.0 5,413,999 + TX73_024925 0.37 -0.2 5,414,011 - TX73_024925 0.39 -0.3 5,414,029 - TX73_024925 0.42 -0.2 5,414,033 + TX73_024925 0.42 -0.7 5,414,054 - TX73_024925 0.46 +1.6 5,414,056 + TX73_024925 0.46 -0.4 5,414,061 + TX73_024925 0.47 +1.4 5,414,069 - TX73_024925 0.48 -1.2 5,414,079 + TX73_024925 0.50 +0.9 5,414,081 + TX73_024925 0.50 -1.7 5,414,081 + TX73_024925 0.50 +1.0 5,414,141 + TX73_024925 0.60 +0.4 5,414,147 + TX73_024925 0.61 +1.8 5,414,213 + TX73_024925 0.73 +0.2 5,414,239 + TX73_024925 0.77 -0.5 5,414,247 - TX73_024925 0.78 -0.3 5,414,284 + TX73_024925 0.85 +1.7 5,414,284 + TX73_024925 0.85 +1.0 5,414,307 - TX73_024925 0.88 +1.0 5,414,307 - TX73_024925 0.88 -1.1 5,414,338 + +0.7 5,414,346 - -2.7 5,414,370 - +0.7 5,414,436 + -0.1 5,414,437 + -0.1 5,414,498 + -0.1 5,414,506 - -2.0 5,414,506 - -2.5 5,414,516 - +0.5 5,414,521 + +0.9 5,414,548 + TX73_024930 0.12 +1.3 5,414,548 + TX73_024930 0.12 +0.9 5,414,551 + TX73_024930 0.12 -0.3 5,414,554 - TX73_024930 0.13 +0.5 5,414,556 - TX73_024930 0.13 +0.1 5,414,556 - TX73_024930 0.13 -0.2 5,414,556 - TX73_024930 0.13 -1.4 5,414,577 + TX73_024930 0.15 -0.3 5,414,606 - TX73_024930 0.18 -0.3
Or see this region's nucleotide sequence