Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023645 and TX73_023650 are separated by 36 nucleotides TX73_023650 and TX73_023655 are separated by 26 nucleotides
TX73_023645: TX73_023645 - DUF2130 domain-containing protein, at 5,130,325 to 5,131,614
_023645
TX73_023650: TX73_023650 - acetyl-CoA hydrolase/transferase C-terminal domain-containing protein, at 5,131,651 to 5,132,892
_023650
TX73_023655: TX73_023655 - acyl-CoA/acyl-ACP dehydrogenase, at 5,132,919 to 5,134,085
_023655
Position (kb) 5131
5132
5133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5130.665 kb on + strand, within TX73_023645 at 5130.681 kb on + strand, within TX73_023645 at 5130.683 kb on - strand, within TX73_023645 at 5130.698 kb on - strand, within TX73_023645 at 5130.723 kb on + strand, within TX73_023645 at 5130.751 kb on - strand, within TX73_023645 at 5130.768 kb on + strand, within TX73_023645 at 5130.768 kb on + strand, within TX73_023645 at 5130.769 kb on + strand, within TX73_023645 at 5130.776 kb on - strand, within TX73_023645 at 5130.831 kb on + strand, within TX73_023645 at 5130.831 kb on + strand, within TX73_023645 at 5130.886 kb on + strand, within TX73_023645 at 5130.902 kb on - strand, within TX73_023645 at 5130.907 kb on - strand, within TX73_023645 at 5130.916 kb on - strand, within TX73_023645 at 5130.919 kb on - strand, within TX73_023645 at 5130.934 kb on + strand, within TX73_023645 at 5130.949 kb on + strand, within TX73_023645 at 5130.981 kb on + strand, within TX73_023645 at 5130.995 kb on - strand, within TX73_023645 at 5130.995 kb on - strand, within TX73_023645 at 5130.995 kb on - strand, within TX73_023645 at 5131.024 kb on + strand, within TX73_023645 at 5131.031 kb on + strand, within TX73_023645 at 5131.043 kb on + strand, within TX73_023645 at 5131.108 kb on - strand, within TX73_023645 at 5131.137 kb on + strand, within TX73_023645 at 5131.142 kb on + strand, within TX73_023645 at 5131.143 kb on + strand, within TX73_023645 at 5131.145 kb on - strand, within TX73_023645 at 5131.145 kb on - strand, within TX73_023645 at 5131.151 kb on - strand, within TX73_023645 at 5131.151 kb on - strand, within TX73_023645 at 5131.180 kb on + strand, within TX73_023645 at 5131.190 kb on - strand, within TX73_023645 at 5131.190 kb on - strand, within TX73_023645 at 5131.190 kb on - strand, within TX73_023645 at 5131.197 kb on - strand, within TX73_023645 at 5131.199 kb on + strand, within TX73_023645 at 5131.207 kb on - strand, within TX73_023645 at 5131.274 kb on - strand, within TX73_023645 at 5131.274 kb on - strand, within TX73_023645 at 5131.297 kb on + strand, within TX73_023645 at 5131.297 kb on + strand, within TX73_023645 at 5131.350 kb on + strand, within TX73_023645 at 5131.352 kb on - strand, within TX73_023645 at 5131.395 kb on - strand, within TX73_023645 at 5131.404 kb on + strand, within TX73_023645 at 5131.408 kb on - strand, within TX73_023645 at 5131.452 kb on + strand, within TX73_023645 at 5131.472 kb on + strand, within TX73_023645 at 5131.473 kb on - strand, within TX73_023645 at 5131.482 kb on + strand, within TX73_023645 at 5131.642 kb on + strand at 5131.642 kb on + strand at 5131.652 kb on - strand at 5131.661 kb on + strand at 5131.666 kb on + strand at 5131.666 kb on + strand at 5131.690 kb on + strand at 5131.700 kb on - strand at 5131.714 kb on + strand at 5131.717 kb on - strand at 5131.737 kb on + strand at 5131.752 kb on + strand at 5131.787 kb on + strand, within TX73_023650 at 5131.811 kb on + strand, within TX73_023650 at 5131.833 kb on + strand, within TX73_023650 at 5131.846 kb on - strand, within TX73_023650 at 5131.851 kb on - strand, within TX73_023650 at 5131.881 kb on - strand, within TX73_023650 at 5131.889 kb on - strand, within TX73_023650 at 5131.948 kb on + strand, within TX73_023650 at 5131.974 kb on + strand, within TX73_023650 at 5131.984 kb on + strand, within TX73_023650 at 5132.000 kb on - strand, within TX73_023650 at 5132.015 kb on + strand, within TX73_023650 at 5132.023 kb on - strand, within TX73_023650 at 5132.047 kb on + strand, within TX73_023650 at 5132.048 kb on + strand, within TX73_023650 at 5132.095 kb on + strand, within TX73_023650 at 5132.114 kb on + strand, within TX73_023650 at 5132.147 kb on - strand, within TX73_023650 at 5132.249 kb on + strand, within TX73_023650 at 5132.376 kb on + strand, within TX73_023650 at 5132.381 kb on + strand, within TX73_023650 at 5132.381 kb on + strand, within TX73_023650 at 5132.381 kb on + strand, within TX73_023650 at 5132.389 kb on - strand, within TX73_023650 at 5132.389 kb on - strand, within TX73_023650 at 5132.389 kb on - strand, within TX73_023650 at 5132.464 kb on + strand, within TX73_023650 at 5132.531 kb on - strand, within TX73_023650 at 5132.592 kb on - strand, within TX73_023650 at 5132.592 kb on - strand, within TX73_023650 at 5132.756 kb on - strand, within TX73_023650 at 5132.853 kb on + strand at 5132.854 kb on + strand at 5132.854 kb on + strand at 5132.862 kb on + strand at 5132.880 kb on + strand at 5132.893 kb on - strand at 5132.945 kb on - strand at 5132.962 kb on - strand at 5133.036 kb on - strand, within TX73_023655 at 5133.141 kb on - strand, within TX73_023655 at 5133.205 kb on + strand, within TX73_023655 at 5133.213 kb on - strand, within TX73_023655 at 5133.235 kb on + strand, within TX73_023655 at 5133.243 kb on - strand, within TX73_023655 at 5133.258 kb on + strand, within TX73_023655 at 5133.258 kb on + strand, within TX73_023655 at 5133.283 kb on - strand, within TX73_023655 at 5133.369 kb on - strand, within TX73_023655 at 5133.390 kb on - strand, within TX73_023655 at 5133.458 kb on - strand, within TX73_023655 at 5133.488 kb on - strand, within TX73_023655 at 5133.504 kb on + strand, within TX73_023655 at 5133.514 kb on + strand, within TX73_023655 at 5133.522 kb on - strand, within TX73_023655 at 5133.522 kb on - strand, within TX73_023655 at 5133.524 kb on + strand, within TX73_023655 at 5133.651 kb on + strand, within TX73_023655 at 5133.657 kb on - strand, within TX73_023655 at 5133.657 kb on - strand, within TX73_023655 at 5133.659 kb on - strand, within TX73_023655 at 5133.667 kb on + strand, within TX73_023655 at 5133.667 kb on + strand, within TX73_023655 at 5133.689 kb on + strand, within TX73_023655 at 5133.694 kb on + strand, within TX73_023655 at 5133.740 kb on - strand, within TX73_023655 at 5133.767 kb on + strand, within TX73_023655 at 5133.775 kb on + strand, within TX73_023655 at 5133.775 kb on + strand, within TX73_023655 at 5133.783 kb on - strand, within TX73_023655 at 5133.809 kb on + strand, within TX73_023655
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 5,130,665 + TX73_023645 0.26 -0.3 5,130,681 + TX73_023645 0.28 -1.7 5,130,683 - TX73_023645 0.28 -2.8 5,130,698 - TX73_023645 0.29 -1.8 5,130,723 + TX73_023645 0.31 +0.9 5,130,751 - TX73_023645 0.33 +1.3 5,130,768 + TX73_023645 0.34 -2.9 5,130,768 + TX73_023645 0.34 +1.5 5,130,769 + TX73_023645 0.34 +0.5 5,130,776 - TX73_023645 0.35 -2.5 5,130,831 + TX73_023645 0.39 +2.3 5,130,831 + TX73_023645 0.39 +0.4 5,130,886 + TX73_023645 0.43 +1.7 5,130,902 - TX73_023645 0.45 +1.6 5,130,907 - TX73_023645 0.45 +0.6 5,130,916 - TX73_023645 0.46 -1.2 5,130,919 - TX73_023645 0.46 -2.5 5,130,934 + TX73_023645 0.47 -2.6 5,130,949 + TX73_023645 0.48 -2.0 5,130,981 + TX73_023645 0.51 +0.3 5,130,995 - TX73_023645 0.52 +0.3 5,130,995 - TX73_023645 0.52 +0.8 5,130,995 - TX73_023645 0.52 -3.1 5,131,024 + TX73_023645 0.54 -0.1 5,131,031 + TX73_023645 0.55 -0.4 5,131,043 + TX73_023645 0.56 +0.3 5,131,108 - TX73_023645 0.61 +1.2 5,131,137 + TX73_023645 0.63 +0.9 5,131,142 + TX73_023645 0.63 -2.7 5,131,143 + TX73_023645 0.63 +0.0 5,131,145 - TX73_023645 0.64 +3.6 5,131,145 - TX73_023645 0.64 +0.0 5,131,151 - TX73_023645 0.64 -0.0 5,131,151 - TX73_023645 0.64 -1.5 5,131,180 + TX73_023645 0.66 -0.5 5,131,190 - TX73_023645 0.67 -2.5 5,131,190 - TX73_023645 0.67 -0.8 5,131,190 - TX73_023645 0.67 +0.1 5,131,197 - TX73_023645 0.68 +0.9 5,131,199 + TX73_023645 0.68 -0.2 5,131,207 - TX73_023645 0.68 +1.3 5,131,274 - TX73_023645 0.74 +0.9 5,131,274 - TX73_023645 0.74 +0.3 5,131,297 + TX73_023645 0.75 +1.4 5,131,297 + TX73_023645 0.75 +1.7 5,131,350 + TX73_023645 0.79 +1.3 5,131,352 - TX73_023645 0.80 -0.6 5,131,395 - TX73_023645 0.83 -1.8 5,131,404 + TX73_023645 0.84 +1.1 5,131,408 - TX73_023645 0.84 +1.4 5,131,452 + TX73_023645 0.87 +2.3 5,131,472 + TX73_023645 0.89 -1.4 5,131,473 - TX73_023645 0.89 -0.1 5,131,482 + TX73_023645 0.90 +1.4 5,131,642 + -1.8 5,131,642 + +3.3 5,131,652 - -1.4 5,131,661 + +1.4 5,131,666 + -0.9 5,131,666 + -0.6 5,131,690 + +0.1 5,131,700 - -0.0 5,131,714 + -2.9 5,131,717 - +0.2 5,131,737 + +1.3 5,131,752 + -2.9 5,131,787 + TX73_023650 0.11 +0.9 5,131,811 + TX73_023650 0.13 +0.5 5,131,833 + TX73_023650 0.15 +0.3 5,131,846 - TX73_023650 0.16 +0.0 5,131,851 - TX73_023650 0.16 -0.8 5,131,881 - TX73_023650 0.19 -2.0 5,131,889 - TX73_023650 0.19 -1.7 5,131,948 + TX73_023650 0.24 +0.6 5,131,974 + TX73_023650 0.26 +0.4 5,131,984 + TX73_023650 0.27 -0.3 5,132,000 - TX73_023650 0.28 -1.5 5,132,015 + TX73_023650 0.29 +0.8 5,132,023 - TX73_023650 0.30 +1.1 5,132,047 + TX73_023650 0.32 +1.1 5,132,048 + TX73_023650 0.32 -2.1 5,132,095 + TX73_023650 0.36 -1.2 5,132,114 + TX73_023650 0.37 -2.1 5,132,147 - TX73_023650 0.40 -0.1 5,132,249 + TX73_023650 0.48 -1.0 5,132,376 + TX73_023650 0.58 +0.7 5,132,381 + TX73_023650 0.59 -2.0 5,132,381 + TX73_023650 0.59 -0.9 5,132,381 + TX73_023650 0.59 +0.4 5,132,389 - TX73_023650 0.59 +0.0 5,132,389 - TX73_023650 0.59 +0.9 5,132,389 - TX73_023650 0.59 -0.9 5,132,464 + TX73_023650 0.65 +0.4 5,132,531 - TX73_023650 0.71 +0.7 5,132,592 - TX73_023650 0.76 -0.5 5,132,592 - TX73_023650 0.76 +0.8 5,132,756 - TX73_023650 0.89 -1.9 5,132,853 + -0.4 5,132,854 + -0.3 5,132,854 + +0.8 5,132,862 + -0.0 5,132,880 + +1.6 5,132,893 - +0.3 5,132,945 - -2.0 5,132,962 - +0.1 5,133,036 - TX73_023655 0.10 +1.4 5,133,141 - TX73_023655 0.19 -1.4 5,133,205 + TX73_023655 0.25 +0.2 5,133,213 - TX73_023655 0.25 +1.0 5,133,235 + TX73_023655 0.27 +0.2 5,133,243 - TX73_023655 0.28 -0.9 5,133,258 + TX73_023655 0.29 -1.7 5,133,258 + TX73_023655 0.29 +0.2 5,133,283 - TX73_023655 0.31 -1.8 5,133,369 - TX73_023655 0.39 +2.5 5,133,390 - TX73_023655 0.40 -0.6 5,133,458 - TX73_023655 0.46 +1.3 5,133,488 - TX73_023655 0.49 -0.2 5,133,504 + TX73_023655 0.50 +1.7 5,133,514 + TX73_023655 0.51 +0.3 5,133,522 - TX73_023655 0.52 +1.0 5,133,522 - TX73_023655 0.52 +0.6 5,133,524 + TX73_023655 0.52 -0.1 5,133,651 + TX73_023655 0.63 -0.2 5,133,657 - TX73_023655 0.63 -1.2 5,133,657 - TX73_023655 0.63 +1.0 5,133,659 - TX73_023655 0.63 -0.5 5,133,667 + TX73_023655 0.64 +1.5 5,133,667 + TX73_023655 0.64 -1.8 5,133,689 + TX73_023655 0.66 +0.9 5,133,694 + TX73_023655 0.66 +0.8 5,133,740 - TX73_023655 0.70 +0.3 5,133,767 + TX73_023655 0.73 -2.6 5,133,775 + TX73_023655 0.73 +0.4 5,133,775 + TX73_023655 0.73 -1.5 5,133,783 - TX73_023655 0.74 -0.9 5,133,809 + TX73_023655 0.76 +0.6
Or see this region's nucleotide sequence