Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023005

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
5,001,767	-		TX73_023000	0.56	+1.0
5,001,806	+		TX73_023000	0.59	+2.0
5,001,831	+		TX73_023000	0.60	+1.7
5,001,884	-		TX73_023000	0.63	-0.5
5,001,898	-		TX73_023000	0.64	-3.4
5,001,900	+		TX73_023000	0.64	+2.1
5,001,922	+		TX73_023000	0.66	-0.1
5,001,922	+		TX73_023000	0.66	+0.7
5,001,930	-		TX73_023000	0.66	-1.1
5,001,946	+		TX73_023000	0.67	+1.2
5,001,946	+		TX73_023000	0.67	+0.6
5,001,954	-		TX73_023000	0.68	-2.9
5,001,954	-		TX73_023000	0.68	-2.8
5,001,959	+		TX73_023000	0.68	+1.8
5,001,969	-		TX73_023000	0.69	+1.8
5,001,971	+		TX73_023000	0.69	-1.3
5,001,971	+		TX73_023000	0.69	+0.4
5,001,971	+		TX73_023000	0.69	+0.8
5,001,979	-		TX73_023000	0.69	+1.6
5,001,979	-		TX73_023000	0.69	+0.9
5,001,979	-		TX73_023000	0.69	+2.2
5,001,979	-		TX73_023000	0.69	-0.7
5,001,979	-		TX73_023000	0.69	-1.9
5,002,047	+		TX73_023000	0.73	+1.7
5,002,117	-		TX73_023000	0.78	+2.3
5,002,120	+		TX73_023000	0.78	+1.3
5,002,123	-		TX73_023000	0.78	+1.3
5,002,123	-		TX73_023000	0.78	+0.3
5,002,125	+		TX73_023000	0.78	+1.8
5,002,141	+		TX73_023000	0.79	+1.3
5,002,149	-		TX73_023000	0.80	+0.6
5,002,164	-		TX73_023000	0.81	+0.4
5,002,178	-		TX73_023000	0.81	+1.6
5,002,196	+		TX73_023000	0.83	+2.0
5,002,227	-		TX73_023000	0.84	-1.1
5,002,231	+		TX73_023000	0.85	+1.2
5,002,290	+		TX73_023000	0.88	-0.7
5,002,304	-		TX73_023000	0.89	+0.8
5,002,306	+		TX73_023000	0.89	+3.5
5,002,375	-				+0.9
5,002,375	-				+1.6
5,002,389	+				+0.9
5,002,408	-				-0.1
5,002,434	-				+2.1
5,002,458	+				-1.4
5,002,492	+				+0.6
5,002,497	+				-2.2
5,002,500	-				+1.8
5,002,512	+				-0.3
5,002,512	+				-1.2
5,002,512	+				+1.3
5,002,517	+				-0.5
5,002,520	-				+1.0
5,002,525	-				+0.4
5,002,529	+				-0.3
5,002,530	-				-1.2
5,002,537	-				+0.7
5,002,581	-				+1.5
5,002,609	+				-1.6
5,002,615	+				-0.9
5,002,615	+				-2.3
5,002,615	+				-0.7
5,002,623	-				-0.1
5,002,655	-				-1.0
5,002,761	-				-2.0
5,002,795	+				+1.9
5,002,817	-				+0.6
5,002,819	-				+2.1
5,002,832	+				-1.5
5,002,840	-				+2.2
5,002,840	-				+0.5
5,002,857	+				+1.0
5,002,876	+				-1.0
5,002,882	-				+0.6
5,002,882	-				+1.0
5,002,882	-				+0.5
5,002,912	+				-0.1
5,002,923	-				-1.3
5,002,925	+				+0.6
5,002,938	-				-1.6
5,002,948	-				-2.2
5,002,964	-				+0.2
5,002,968	+				-1.3
5,002,994	-				+1.1
5,003,022	+		TX73_023005	0.10	+1.1
5,003,030	-		TX73_023005	0.10	+0.1
5,003,032	+		TX73_023005	0.10	+0.0
5,003,049	-		TX73_023005	0.11	-0.1
5,003,165	+		TX73_023005	0.15	-1.0
5,003,174	-		TX73_023005	0.16	+0.9
5,003,202	+		TX73_023005	0.17	+1.4
5,003,210	-		TX73_023005	0.17	+2.1
5,003,220	+		TX73_023005	0.18	+1.0
5,003,232	-		TX73_023005	0.18	+0.6
5,003,271	+		TX73_023005	0.19	+1.7
5,003,282	+		TX73_023005	0.20	+1.6
5,003,282	+		TX73_023005	0.20	-1.2
5,003,282	+		TX73_023005	0.20	+0.7
5,003,282	+		TX73_023005	0.20	-1.2
5,003,290	-		TX73_023005	0.20	+0.6
5,003,373	+		TX73_023005	0.23	+0.9
5,003,379	-		TX73_023005	0.24	+2.3
5,003,385	+		TX73_023005	0.24	+1.4
5,003,405	+		TX73_023005	0.25	-0.1
5,003,408	-		TX73_023005	0.25	+2.7
5,003,413	-		TX73_023005	0.25	-0.5
5,003,413	-		TX73_023005	0.25	-2.2
5,003,413	-		TX73_023005	0.25	+0.6
5,003,438	+		TX73_023005	0.26	+2.3
5,003,438	+		TX73_023005	0.26	+0.8
5,003,438	+		TX73_023005	0.26	-2.5
5,003,446	-		TX73_023005	0.26	+1.8
5,003,478	+		TX73_023005	0.27	-2.1
5,003,479	-		TX73_023005	0.27	+0.0
5,003,544	+		TX73_023005	0.30	+0.7
5,003,544	+		TX73_023005	0.30	-2.5
5,003,544	+		TX73_023005	0.30	-0.2
5,003,562	-		TX73_023005	0.30	+1.0
5,003,562	-		TX73_023005	0.30	+0.2
5,003,567	-		TX73_023005	0.31	+2.1
5,003,567	-		TX73_023005	0.31	-1.4
5,003,578	+		TX73_023005	0.31	-2.0
5,003,581	-		TX73_023005	0.31	-2.1
5,003,586	-		TX73_023005	0.31	+0.1
5,003,586	-		TX73_023005	0.31	+1.5
5,003,617	-		TX73_023005	0.33	+2.0
5,003,626	-		TX73_023005	0.33	-2.1
5,003,667	+		TX73_023005	0.34	+1.3
5,003,667	+		TX73_023005	0.34	+1.6
5,003,675	-		TX73_023005	0.35	+0.9
5,003,675	-		TX73_023005	0.35	+2.1
5,003,704	+		TX73_023005	0.36	+0.4
5,003,709	-		TX73_023005	0.36	+0.5
5,003,791	+		TX73_023005	0.39	+2.1
5,003,810	+		TX73_023005	0.40	-2.8
5,003,812	+		TX73_023005	0.40	+1.4
5,003,813	-		TX73_023005	0.40	+2.0
5,003,820	+		TX73_023005	0.40	-3.7
5,003,827	+		TX73_023005	0.41	+0.4
5,003,901	+		TX73_023005	0.43	+1.3
5,003,903	+		TX73_023005	0.43	-1.7
5,003,911	+		TX73_023005	0.44	+0.6
5,003,911	-		TX73_023005	0.44	+0.3
5,003,934	+		TX73_023005	0.45	+1.3
5,003,961	+		TX73_023005	0.46	-1.5
5,003,963	+		TX73_023005	0.46	-0.5
5,003,976	-		TX73_023005	0.46	+1.5
5,004,003	+		TX73_023005	0.47	+1.8
5,004,003	+		TX73_023005	0.47	-1.8
5,004,011	-		TX73_023005	0.47	+1.0
5,004,011	-		TX73_023005	0.47	+1.1
5,004,011	-		TX73_023005	0.47	-0.9
5,004,052	-		TX73_023005	0.49	-0.5
5,004,057	-		TX73_023005	0.49	+0.3
5,004,120	+		TX73_023005	0.52	-1.8
5,004,147	+		TX73_023005	0.53	-0.6
5,004,159	+		TX73_023005	0.53	+1.3
5,004,174	-		TX73_023005	0.54	+0.9
5,004,201	+		TX73_023005	0.55	+0.0
5,004,217	-		TX73_023005	0.55	-0.6
5,004,231	+		TX73_023005	0.56	-2.1
5,004,254	-		TX73_023005	0.57	+0.8
5,004,273	+		TX73_023005	0.57	+1.5
5,004,306	+		TX73_023005	0.59	-1.8
5,004,314	-		TX73_023005	0.59	+1.0
5,004,314	-		TX73_023005	0.59	+0.3
5,004,314	-		TX73_023005	0.59	+2.1
5,004,324	-		TX73_023005	0.59	-1.3
5,004,336	-		TX73_023005	0.60	+0.5
5,004,343	+		TX73_023005	0.60	-2.0
5,004,351	-		TX73_023005	0.60	+0.3
5,004,352	-		TX73_023005	0.60	+1.7
5,004,356	+		TX73_023005	0.61	-0.4
5,004,377	+		TX73_023005	0.61	+0.7
5,004,452	-		TX73_023005	0.64	-0.0
5,004,454	+		TX73_023005	0.64	-1.3
5,004,456	-		TX73_023005	0.64	+0.6
5,004,462	-		TX73_023005	0.65	-1.2
5,004,467	-		TX73_023005	0.65	+0.3
5,004,467	-		TX73_023005	0.65	+0.3
5,004,478	+		TX73_023005	0.65	-2.0
5,004,484	+		TX73_023005	0.65	+0.7
5,004,529	+		TX73_023005	0.67	+0.1
5,004,546	-		TX73_023005	0.68	+0.1
5,004,576	-		TX73_023005	0.69	-1.3
5,004,609	+		TX73_023005	0.70	-1.3
5,004,617	-		TX73_023005	0.70	+0.5
5,004,671	-		TX73_023005	0.72	-0.1
5,004,709	-		TX73_023005	0.74	+3.2
5,004,739	-		TX73_023005	0.75	-0.9
5,004,745	-		TX73_023005	0.75	+0.9
5,004,784	-		TX73_023005	0.77	-0.1
5,004,864	-		TX73_023005	0.80	+0.3
5,004,883	+		TX73_023005	0.81	+1.1
5,004,889	+		TX73_023005	0.81	+1.8
5,004,913	+		TX73_023005	0.82	+0.4
5,004,915	+		TX73_023005	0.82	-0.1
5,004,915	+		TX73_023005	0.82	+1.7
5,004,918	-		TX73_023005	0.82	+0.7
5,004,921	-		TX73_023005	0.82	-1.4
5,004,921	-		TX73_023005	0.82	-0.0
5,004,923	-		TX73_023005	0.82	+2.0
5,004,948	+		TX73_023005	0.83	-3.8
5,004,954	+		TX73_023005	0.83	+1.3
5,004,978	+		TX73_023005	0.84	+0.4
5,004,978	+		TX73_023005	0.84	+1.7
5,005,007	-		TX73_023005	0.85	+1.4
5,005,013	-		TX73_023005	0.85	-1.4
5,005,029	+		TX73_023005	0.86	+1.1
5,005,034	-		TX73_023005	0.86	+0.0
5,005,034	-		TX73_023005	0.86	+0.2
5,005,114	-		TX73_023005	0.89	+0.9
5,005,116	-		TX73_023005	0.89	+0.9
5,005,150	-				+0.9
5,005,154	-				+0.1
5,005,159	-				+1.1
5,005,167	+				+2.3
5,005,177	+				+0.7
5,005,183	+				+0.7
5,005,222	+				+0.0
5,005,245	-				+1.0
5,005,252	+				+0.2
5,005,254	-				-2.2
5,005,257	+				-0.1
5,005,265	-				-1.3
5,005,265	-				+1.3
5,005,273	-				+0.4
5,005,296	-				+0.0
5,005,296	-				-0.8
5,005,305	+				-0.6
5,005,305	+				+1.5
5,005,306	-				-0.9
5,005,313	-				+1.8
5,005,327	+				-0.3
5,005,340	+				-0.8
5,005,350	+				+0.2
5,005,362	-				+0.9
5,005,369	-				+0.4
5,005,407	+				-2.3
5,005,413	+				+0.7
5,005,415	-				-0.0
5,005,415	-				+0.9
5,005,415	-				-0.3
5,005,483	-				-0.9
5,005,499	-				-3.0
5,005,530	+				+2.2
5,005,571	+				-2.5
5,005,607	+				-0.5
5,005,607	+				+1.5
5,005,615	-				+0.9
5,005,615	-				-1.1
5,005,643	-				-0.9
5,005,645	+				+0.6
5,005,664	-				-1.2
5,005,670	+				+0.8
5,005,671	+				+0.0
5,005,679	-				-0.7
5,005,690	+				-1.6
5,005,690	+				-2.8
5,005,692	+				-1.5
5,005,692	+				+1.5
5,005,698	-				-0.8
5,005,702	+		TX73_023010	0.10	-0.8
5,005,702	+		TX73_023010	0.10	+1.7
5,005,707	+		TX73_023010	0.11	+2.3
5,005,710	-		TX73_023010	0.11	-0.7
5,005,719	+		TX73_023010	0.12	-2.9
5,005,719	+		TX73_023010	0.12	-1.8
5,005,727	-		TX73_023010	0.13	-1.0
5,005,727	-		TX73_023010	0.13	+1.4
5,005,732	-		TX73_023010	0.14	+1.0
5,005,850	+		TX73_023010	0.29	-2.5
5,005,858	-		TX73_023010	0.30	+1.7
5,005,900	+		TX73_023010	0.35	-0.2
5,005,966	-		TX73_023010	0.43	-0.2
5,005,978	-		TX73_023010	0.45	+0.6
5,005,988	-		TX73_023010	0.46	+0.1
5,006,014	+		TX73_023010	0.50	-0.9
5,006,014	+		TX73_023010	0.50	-0.5
5,006,021	-		TX73_023010	0.50	+0.9
5,006,027	-		TX73_023010	0.51	-1.0
5,006,049	-		TX73_023010	0.54	+0.1
5,006,057	-		TX73_023010	0.55	-3.3
5,006,057	-		TX73_023010	0.55	+2.4
5,006,057	-		TX73_023010	0.55	-0.8
5,006,068	-		TX73_023010	0.56	-1.7
5,006,089	+		TX73_023010	0.59	+1.0
5,006,142	+		TX73_023010	0.66	+0.8
5,006,142	+		TX73_023010	0.66	+0.7
5,006,142	+		TX73_023010	0.66	+0.0
5,006,142	+		TX73_023010	0.66	-0.6
5,006,142	+		TX73_023010	0.66	+2.6
5,006,142	+		TX73_023010	0.66	-0.1
5,006,142	+		TX73_023010	0.66	+0.7
5,006,142	+		TX73_023010	0.66	-0.7
5,006,142	+		TX73_023010	0.66	+1.0
5,006,143	-		TX73_023010	0.66	-1.6
5,006,143	-		TX73_023010	0.66	-1.5
5,006,143	-		TX73_023010	0.66	-1.0
5,006,150	-		TX73_023010	0.67	+1.4
5,006,150	-		TX73_023010	0.67	+0.8
5,006,150	-		TX73_023010	0.67	+1.4
5,006,150	-		TX73_023010	0.67	-0.6
5,006,150	-		TX73_023010	0.67	+0.5
5,006,150	-		TX73_023010	0.67	+2.0
5,006,155	-		TX73_023010	0.67	+0.9
5,006,190	+		TX73_023010	0.72	+1.1
5,006,190	+		TX73_023010	0.72	+0.6
5,006,210	+		TX73_023010	0.74	-1.5
5,006,218	-		TX73_023010	0.75	+0.8
5,006,218	-		TX73_023010	0.75	+0.3
5,006,218	-		TX73_023010	0.75	+1.4
5,006,227	-		TX73_023010	0.77	+2.2
5,006,227	-		TX73_023010	0.77	-1.7
5,006,249	-		TX73_023010	0.79	-2.0
5,006,253	-		TX73_023010	0.80	+1.5
5,006,258	-		TX73_023010	0.80	+1.4
5,006,288	+		TX73_023010	0.84	+0.3
5,006,288	+		TX73_023010	0.84	+2.2
5,006,296	-		TX73_023010	0.85	-0.2
5,006,298	+		TX73_023010	0.86	-0.6
5,006,307	+		TX73_023010	0.87	+1.0
5,006,316	-		TX73_023010	0.88	-1.5
5,006,339	-				-0.9
5,006,339	-				+0.2
5,006,339	-				-1.4
5,006,379	+				+0.9
5,006,384	+				+0.4
5,006,387	-				+1.0