Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017670

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
3,859,013	+		TX73_017660	0.52	-0.9
3,859,051	-		TX73_017660	0.58	+0.3
3,859,066	+		TX73_017660	0.60	-0.2
3,859,130	-		TX73_017660	0.70	+0.3
3,859,140	-		TX73_017660	0.72	-0.7
3,859,140	-		TX73_017660	0.72	-0.9
3,859,147	+		TX73_017660	0.73	+0.0
3,859,186	+		TX73_017660	0.79	+0.1
3,859,194	-		TX73_017660	0.81	+0.3
3,859,207	+		TX73_017660	0.83	-1.4
3,859,240	+		TX73_017660	0.88	-0.2
3,859,241	+		TX73_017660	0.88	-0.4
3,859,248	-		TX73_017660	0.89	+1.1
3,859,281	+				+0.3
3,859,336	+				+0.9
3,859,336	+				-0.2
3,859,345	-				+1.3
3,859,357	+				+0.6
3,859,382	-		TX73_017665	0.10	-2.8
3,859,459	-		TX73_017665	0.28	+1.0
3,859,489	+		TX73_017665	0.35	-1.7
3,859,495	-		TX73_017665	0.36	-0.7
3,859,525	+		TX73_017665	0.43	+0.7
3,859,525	+		TX73_017665	0.43	+0.6
3,859,525	+		TX73_017665	0.43	-0.9
3,859,564	+		TX73_017665	0.52	+1.5
3,859,567	-		TX73_017665	0.53	+0.0
3,859,567	-		TX73_017665	0.53	+0.9
3,859,572	-		TX73_017665	0.54	+1.2
3,859,580	-		TX73_017665	0.56	+1.3
3,859,602	-		TX73_017665	0.61	+0.4
3,859,614	-		TX73_017665	0.64	+3.6
3,859,625	+		TX73_017665	0.67	-0.1
3,859,625	+		TX73_017665	0.67	+1.0
3,859,625	+		TX73_017665	0.67	-2.6
3,859,633	-		TX73_017665	0.69	+1.0
3,859,633	-		TX73_017665	0.69	+0.4
3,859,633	-		TX73_017665	0.69	+1.9
3,859,648	+		TX73_017665	0.72	-0.3
3,859,653	+		TX73_017665	0.73	-0.4
3,859,676	+		TX73_017665	0.79	+1.0
3,859,721	+		TX73_017665	0.89	+0.0
3,859,728	-				+0.7
3,859,729	-				-0.7
3,859,757	+				+1.4
3,859,763	+				-1.0
3,859,763	+				+1.3
3,859,763	+				-2.9
3,859,763	+				+0.5
3,859,769	-				-1.5
3,859,771	-				-0.1
3,859,777	+				-1.3
3,859,791	+				+1.6
3,859,825	-				+0.6
3,859,856	+				-1.1
3,859,865	+				+0.3
3,859,873	-				+0.1
3,859,912	-				-1.9
3,859,917	-				-0.8
3,859,984	+				+0.0
3,860,003	+				-1.4
3,860,026	-				+0.8
3,860,026	-				-1.4
3,860,039	-				-0.1
3,860,055	+				+0.8
3,860,098	-		TX73_017670	0.12	-0.1
3,860,099	+		TX73_017670	0.12	+0.7
3,860,103	-		TX73_017670	0.13	-2.0
3,860,176	+		TX73_017670	0.22	+1.7
3,860,201	+		TX73_017670	0.25	+0.9
3,860,202	+		TX73_017670	0.26	+2.0
3,860,209	-		TX73_017670	0.26	-0.0
3,860,209	-		TX73_017670	0.26	+0.5
3,860,211	-		TX73_017670	0.27	+0.1
3,860,226	+		TX73_017670	0.29	+0.0
3,860,262	+		TX73_017670	0.33	+1.6
3,860,284	+		TX73_017670	0.36	+1.0
3,860,317	+		TX73_017670	0.40	-0.8
3,860,351	+		TX73_017670	0.45	+1.6
3,860,351	+		TX73_017670	0.45	+0.6
3,860,425	-		TX73_017670	0.54	-0.1
3,860,434	-		TX73_017670	0.56	+1.3
3,860,460	+		TX73_017670	0.59	+1.2
3,860,491	+		TX73_017670	0.63	-0.6
3,860,495	+		TX73_017670	0.64	-0.2
3,860,511	+		TX73_017670	0.66	-0.4
3,860,528	+		TX73_017670	0.68	-2.6
3,860,528	+		TX73_017670	0.68	+1.4
3,860,536	-		TX73_017670	0.69	-1.2
3,860,536	-		TX73_017670	0.69	-0.6
3,860,566	+		TX73_017670	0.73	+3.2
3,860,585	+		TX73_017670	0.75	+0.4
3,860,588	-		TX73_017670	0.76	+0.6
3,860,595	+		TX73_017670	0.77	+2.2
3,860,600	+		TX73_017670	0.77	+1.3
3,860,616	-		TX73_017670	0.79	-1.6
3,860,618	+		TX73_017670	0.80	+0.6
3,860,626	-		TX73_017670	0.81	-1.9
3,860,626	-		TX73_017670	0.81	+1.1
3,860,636	+		TX73_017670	0.82	-1.8
3,860,663	+		TX73_017670	0.85	+0.4
3,860,663	+		TX73_017670	0.85	-0.4
3,860,663	+		TX73_017670	0.85	+0.0
3,860,678	+		TX73_017670	0.87	-0.8
3,860,678	+		TX73_017670	0.87	-0.0
3,860,681	-		TX73_017670	0.88	-0.1
3,860,681	-		TX73_017670	0.88	-1.8
3,860,686	-		TX73_017670	0.88	-0.0
3,860,686	-		TX73_017670	0.88	-1.7
3,860,692	-		TX73_017670	0.89	+1.0
3,860,693	+		TX73_017670	0.89	+0.8
3,860,704	+				+1.1
3,860,761	-				+0.6
3,860,770	+				-0.7
3,860,770	+				+0.6
3,860,770	+				+0.7
3,860,789	+				+0.5
3,860,806	-				+2.1
3,860,811	+				+0.1
3,860,818	+				-0.6
3,860,818	+				-1.0
3,860,818	-				+0.1
3,860,819	-				+0.5
3,860,864	+				+1.3
3,860,869	+				+0.1
3,860,872	-				-1.3
3,860,872	-				-0.3
3,860,881	+				+0.8
3,860,891	-				+1.3
3,860,891	-				-1.0
3,860,899	+				-0.1
3,860,904	+				+1.9
3,860,912	-				+1.5
3,860,915	+				+0.8
3,860,920	+				-1.3
3,860,920	+				-1.6
3,860,920	+				-0.7
3,860,923	-				+1.3
3,860,928	-				+1.0
3,860,928	-				+1.6
3,860,928	-				-0.1
3,860,928	-				-1.4
3,860,928	-				-0.3
3,860,928	-				-0.6
3,860,939	+				+1.0
3,860,946	+				-0.9
3,860,946	+				+0.0
3,860,946	+				-0.6
3,860,946	+				+1.9
3,860,946	+				+1.3
3,860,946	+				-0.5
3,860,946	+				-0.7
3,860,954	-				-0.9
3,860,954	-				-2.4
3,860,954	-				+0.7
3,860,954	-				+0.9
3,860,962	-				+0.3
3,860,971	-				+1.1
3,860,985	+				+1.4
3,860,997	+				+0.5
3,860,997	+				+1.0
3,861,005	-				+0.8
3,861,005	-				+1.5
3,861,005	-				-0.8
3,861,005	-				-0.6
3,861,005	-				-1.6
3,861,005	-				+0.1
3,861,005	-				-0.6
3,861,005	-				-0.1
3,861,005	-				-0.3
3,861,005	-				+0.7
3,861,007	+				+1.3
3,861,020	+				-2.7
3,861,020	+				+1.4
3,861,025	+				+0.3
3,861,028	-				-2.2
3,861,029	-				+0.4
3,861,029	-				+1.3
3,861,119	-				-1.1
3,861,122	-				-0.4
3,861,122	-				-0.9
3,861,138	+				-1.4
3,861,138	+				-0.1
3,861,142	+				+0.9
3,861,162	-				-0.1
3,861,163	+				-2.2
3,861,165	+				+0.8
3,861,166	+				-1.0
3,861,168	+				+1.8
3,861,173	+				+1.1
3,861,175	+				+0.4
3,861,176	+				+0.0
3,861,176	-				+1.5
3,861,184	+				+1.0
3,861,184	+				+0.5
3,861,200	+				-0.0
3,861,210	+				+2.2
3,861,210	+				+1.3
3,861,210	+				-2.0
3,861,210	+				-0.1
3,861,210	+				-0.3
3,861,210	+				-1.4
3,861,215	+				+0.6
3,861,215	+				+1.0
3,861,218	-				+0.5
3,861,218	-				+0.2
3,861,218	-				-0.4
3,861,218	-				+1.5
3,861,218	-				-0.2
3,861,218	-				+2.1
3,861,218	-				-0.4
3,861,220	+				+0.3
3,861,224	-				+0.7
3,861,246	+				-0.1
3,861,254	-				+1.2
3,861,297	+				-0.9
3,861,308	+				+1.8
3,861,312	+				+0.7
3,861,349	-		TX73_017675	0.16	+2.1
3,861,375	-		TX73_017675	0.20	+1.5
3,861,388	+		TX73_017675	0.22	-0.2
3,861,396	-		TX73_017675	0.24	+0.9
3,861,407	+		TX73_017675	0.26	+0.6
3,861,412	-		TX73_017675	0.27	-0.1
3,861,421	+		TX73_017675	0.28	-2.5
3,861,426	+		TX73_017675	0.29	-0.6
3,861,434	-		TX73_017675	0.31	-1.8
3,861,443	+		TX73_017675	0.32	-0.4
3,861,445	+		TX73_017675	0.32	+1.2
3,861,450	+		TX73_017675	0.33	+1.1
3,861,450	+		TX73_017675	0.33	-1.3
3,861,451	-		TX73_017675	0.34	-0.2
3,861,457	+		TX73_017675	0.35	-0.2
3,861,457	+		TX73_017675	0.35	-0.8
3,861,457	+		TX73_017675	0.35	+1.5
3,861,457	+		TX73_017675	0.35	+1.4
3,861,457	+		TX73_017675	0.35	-0.4
3,861,463	-		TX73_017675	0.36	-1.2
3,861,465	-		TX73_017675	0.36	+0.8
3,861,465	-		TX73_017675	0.36	-0.7
3,861,472	-		TX73_017675	0.37	-2.1
3,861,489	+		TX73_017675	0.40	+0.1
3,861,489	+		TX73_017675	0.40	-1.8
3,861,507	-		TX73_017675	0.43	+1.9
3,861,518	+		TX73_017675	0.45	-0.5
3,861,526	-		TX73_017675	0.47	+0.0
3,861,526	-		TX73_017675	0.47	+1.2
3,861,526	-		TX73_017675	0.47	-0.7
3,861,536	+		TX73_017675	0.48	+1.1
3,861,539	-		TX73_017675	0.49	-0.2
3,861,543	+		TX73_017675	0.50	+0.6
3,861,597	+		TX73_017675	0.59	+2.0
3,861,597	+		TX73_017675	0.59	-0.4
3,861,605	-		TX73_017675	0.61	-0.5
3,861,605	-		TX73_017675	0.61	-1.2
3,861,605	-		TX73_017675	0.61	+1.5
3,861,605	-		TX73_017675	0.61	-0.9
3,861,612	-		TX73_017675	0.62	-2.4
3,861,621	-		TX73_017675	0.63	+0.5
3,861,641	+		TX73_017675	0.67	-0.3
3,861,641	+		TX73_017675	0.67	+1.3
3,861,643	+		TX73_017675	0.67	-1.9
3,861,643	+		TX73_017675	0.67	-0.0
3,861,651	-		TX73_017675	0.69	+1.3
3,861,659	-		TX73_017675	0.70	+0.8
3,861,664	+		TX73_017675	0.71	+0.8
3,861,667	-		TX73_017675	0.71	+1.9
3,861,667	-		TX73_017675	0.71	+1.6
3,861,668	+		TX73_017675	0.72	-0.3
3,861,668	+		TX73_017675	0.72	+1.8
3,861,678	+		TX73_017675	0.73	-1.1
3,861,692	+		TX73_017675	0.76	-0.1
3,861,702	+		TX73_017675	0.78	+1.8
3,861,722	-		TX73_017675	0.81	+0.1
3,861,740	-		TX73_017675	0.84	+0.3
3,861,747	+		TX73_017675	0.85	+0.4