Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017195

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
3,753,674	-				+2.0
3,753,674	-				+1.0
3,753,684	+				+0.3
3,753,692	-				+0.3
3,753,695	+				-0.4
3,753,695	+				-0.2
3,753,713	+				-1.2
3,753,716	-		TX73_017190	0.10	-0.3
3,753,720	+		TX73_017190	0.11	+0.6
3,753,721	-		TX73_017190	0.11	-0.2
3,753,721	-		TX73_017190	0.11	-0.4
3,753,750	+		TX73_017190	0.17	-1.3
3,753,750	+		TX73_017190	0.17	-0.5
3,753,751	+		TX73_017190	0.17	-1.7
3,753,751	+		TX73_017190	0.17	-1.6
3,753,751	+		TX73_017190	0.17	-0.8
3,753,758	-		TX73_017190	0.19	-0.2
3,753,758	-		TX73_017190	0.19	-0.1
3,753,758	-		TX73_017190	0.19	-1.5
3,753,759	-		TX73_017190	0.19	-2.6
3,753,761	-		TX73_017190	0.19	+0.9
3,753,769	-		TX73_017190	0.21	-3.3
3,753,779	+		TX73_017190	0.23	-0.1
3,753,781	+		TX73_017190	0.24	-1.9
3,753,787	-		TX73_017190	0.25	+0.2
3,753,801	+		TX73_017190	0.28	-0.7
3,753,806	+		TX73_017190	0.29	-0.7
3,753,809	-		TX73_017190	0.29	+0.7
3,753,814	-		TX73_017190	0.30	-2.2
3,753,819	-		TX73_017190	0.31	-2.2
3,753,836	+		TX73_017190	0.35	-3.2
3,753,846	+		TX73_017190	0.37	-1.0
3,753,858	+		TX73_017190	0.40	-2.6
3,753,858	+		TX73_017190	0.40	-0.5
3,753,866	-		TX73_017190	0.41	+0.9
3,753,866	-		TX73_017190	0.41	+0.7
3,753,866	-		TX73_017190	0.41	-0.9
3,753,889	+		TX73_017190	0.46	+0.5
3,753,896	-		TX73_017190	0.47	-1.6
3,753,897	-		TX73_017190	0.48	+0.7
3,753,932	+		TX73_017190	0.55	-1.5
3,753,957	+		TX73_017190	0.60	-0.1
3,753,983	-		TX73_017190	0.65	-0.5
3,754,097	+		TX73_017190	0.89	+0.3
3,754,097	+		TX73_017190	0.89	+0.8
3,754,097	+		TX73_017190	0.89	+0.4
3,754,105	-				-0.7
3,754,105	-				+1.4
3,754,105	-				-1.5
3,754,105	-				-0.6
3,754,109	+				-1.3
3,754,109	+				+0.6
3,754,111	+				-0.2
3,754,111	+				-0.0
3,754,111	+				-0.2
3,754,115	-				+0.6
3,754,119	-				-1.9
3,754,121	+				-0.4
3,754,127	-				-2.1
3,754,146	-				-0.4
3,754,151	+				+1.2
3,754,161	+				+1.0
3,754,169	-				-0.5
3,754,191	+				-0.9
3,754,199	-				-0.2
3,754,199	-				+0.7
3,754,213	+				-0.8
3,754,221	-				+1.5
3,754,278	+				-1.8
3,754,278	-				+1.2
3,754,278	-				-1.5
3,754,286	-				+0.8
3,754,288	+				-1.9
3,754,288	+				-1.1
3,754,345	-				+1.5
3,754,348	+				-0.9
3,754,351	-				-1.7
3,754,359	+				-1.0
3,754,366	-				-0.7
3,754,384	+				+1.5
3,754,392	-				-0.3
3,754,431	+				+1.8
3,754,475	-				-0.6
3,754,602	+				-2.7
3,754,652	-				-1.1
3,754,659	+				-3.1
3,754,660	+				+0.2
3,754,723	+		TX73_017195	0.14	+0.3
3,754,753	+		TX73_017195	0.23	-1.8
3,754,769	-		TX73_017195	0.27	-1.4
3,754,787	+		TX73_017195	0.32	-0.2
3,754,795	-		TX73_017195	0.35	-1.9
3,754,849	-		TX73_017195	0.50	+2.1
3,754,898	+		TX73_017195	0.64	+4.5
3,754,906	-		TX73_017195	0.66	-1.0
3,754,906	-		TX73_017195	0.66	+0.4
3,754,907	-		TX73_017195	0.67	+1.2
3,754,930	-		TX73_017195	0.73	-0.1
3,754,981	+		TX73_017195	0.88	+0.2
3,754,982	+		TX73_017195	0.88	-0.5
3,754,988	-		TX73_017195	0.90	+1.1
3,754,990	-				-0.1
3,754,992	+				+1.4
3,754,992	+				-0.7
3,754,994	-				+1.5
3,755,000	-				+1.0
3,755,048	+				+0.4
3,755,060	+				+1.4
3,755,060	+				-0.3
3,755,071	+				+0.6
3,755,076	+				-2.0
3,755,079	-				-0.8
3,755,084	-				+1.2
3,755,084	-				-0.1
3,755,089	-				-1.2
3,755,091	-				+0.9
3,755,100	+				-1.8
3,755,102	+				-0.3
3,755,108	-				-0.5
3,755,120	+				-0.2
3,755,123	+				-0.5
3,755,124	-				-1.4
3,755,129	-				-1.2
3,755,131	-				-0.8
3,755,141	-				+0.3
3,755,173	+				+1.2
3,755,209	+				+1.2
3,755,209	+				+0.2
3,755,216	-				+0.6
3,755,217	-				+0.8
3,755,219	+				-0.6
3,755,224	+				+0.2
3,755,224	+				+1.1
3,755,236	+				+1.0
3,755,239	-				-1.3
3,755,241	+				-0.5
3,755,248	-				+2.4
3,755,248	-				+0.1
3,755,252	+				-1.1
3,755,255	+				+1.5
3,755,263	-				+0.4
3,755,326	+				-1.3
3,755,360	+				-2.8
3,755,404	-				-1.3
3,755,404	-				-0.3
3,755,412	-				+1.4
3,755,419	-				+2.0
3,755,443	-				-0.1
3,755,458	-				-0.6
3,755,477	-				-0.5
3,755,496	+				+1.6
3,755,517	+				+0.2
3,755,528	-				-0.3
3,755,545	+				-0.9
3,755,545	+				+1.0
3,755,553	-				-1.0
3,755,553	-				+0.8
3,755,605	+				+1.2
3,755,606	+				+0.8
3,755,613	-				-1.4
3,755,614	-				+0.9
3,755,626	+				-0.0
3,755,626	+				-1.4
3,755,626	+				+1.3
3,755,634	-				-0.4
3,755,634	-				+0.3
3,755,634	-				-0.4
3,755,634	-				+0.1
3,755,639	-				-1.1
3,755,657	+				-0.9
3,755,720	+		TX73_017200	0.22	-0.3
3,755,720	+		TX73_017200	0.22	-1.2
3,755,721	-		TX73_017200	0.22	+0.3
3,755,730	+		TX73_017200	0.24	-0.0
3,755,730	+		TX73_017200	0.24	-1.1
3,755,730	+		TX73_017200	0.24	-2.5
3,755,730	+		TX73_017200	0.24	-1.7
3,755,738	-		TX73_017200	0.26	+1.1
3,755,750	-		TX73_017200	0.29	-0.9
3,755,752	+		TX73_017200	0.29	-0.7
3,755,759	+		TX73_017200	0.31	+1.2
3,755,760	-		TX73_017200	0.31	-1.6
3,755,764	+		TX73_017200	0.32	-0.9
3,755,769	+		TX73_017200	0.34	+0.7
3,755,769	+		TX73_017200	0.34	+2.3
3,755,786	+		TX73_017200	0.38	+2.0
3,755,794	-		TX73_017200	0.40	-1.3
3,755,821	+		TX73_017200	0.46	-0.4
3,755,822	+		TX73_017200	0.46	-1.3
3,755,822	+		TX73_017200	0.46	+0.4
3,755,822	+		TX73_017200	0.46	-0.6
3,755,822	+		TX73_017200	0.46	+0.3
3,755,822	+		TX73_017200	0.46	+0.6
3,755,822	+		TX73_017200	0.46	-0.6
3,755,822	+		TX73_017200	0.46	-1.4
3,755,822	+		TX73_017200	0.46	+0.4
3,755,830	-		TX73_017200	0.48	+1.5
3,755,830	-		TX73_017200	0.48	-0.2
3,755,830	-		TX73_017200	0.48	+2.0
3,755,830	-		TX73_017200	0.48	+0.5
3,755,830	-		TX73_017200	0.48	-0.1
3,755,897	-		TX73_017200	0.64	-0.7
3,755,900	+		TX73_017200	0.65	-0.4
3,755,928	+		TX73_017200	0.72	-0.2
3,755,937	-		TX73_017200	0.74	-1.2
3,755,950	-		TX73_017200	0.77	+0.1
3,755,960	+		TX73_017200	0.79	-0.7
3,755,968	-		TX73_017200	0.81	+1.1
3,756,017	-				+0.4