Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002590 and TX73_002595 are separated by 64 nucleotides TX73_002595 and TX73_002600 are separated by 120 nucleotides TX73_002600 and TX73_002605 are separated by 17 nucleotides
TX73_002590: TX73_002590 - DedA family protein, at 554,831 to 555,448
_002590
TX73_002595: TX73_002595 - DnaJ domain-containing protein, at 555,513 to 556,157
_002595
TX73_002600: TX73_002600 - BolA family transcriptional regulator, at 556,278 to 556,547
_002600
TX73_002605: TX73_002605 - hemolysin family protein, at 556,565 to 557,926
_002605
Position (kb) 556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.284 kb on - strand, within TX73_002590 at 555.284 kb on - strand, within TX73_002590 at 555.289 kb on - strand, within TX73_002590 at 555.291 kb on - strand, within TX73_002590 at 555.294 kb on - strand, within TX73_002590 at 555.310 kb on + strand, within TX73_002590 at 555.328 kb on - strand, within TX73_002590 at 555.338 kb on + strand, within TX73_002590 at 555.343 kb on + strand, within TX73_002590 at 555.346 kb on - strand, within TX73_002590 at 555.353 kb on + strand, within TX73_002590 at 555.353 kb on + strand, within TX73_002590 at 555.356 kb on + strand, within TX73_002590 at 555.356 kb on + strand, within TX73_002590 at 555.369 kb on - strand, within TX73_002590 at 555.407 kb on + strand at 555.408 kb on + strand at 555.424 kb on + strand at 555.432 kb on - strand at 555.435 kb on - strand at 555.457 kb on + strand at 555.457 kb on + strand at 555.476 kb on - strand at 555.497 kb on + strand at 555.510 kb on - strand at 555.510 kb on - strand at 555.510 kb on - strand at 555.519 kb on + strand at 555.524 kb on - strand at 555.532 kb on - strand at 555.548 kb on - strand at 555.549 kb on - strand at 555.555 kb on - strand at 555.570 kb on + strand at 555.578 kb on - strand, within TX73_002595 at 555.578 kb on - strand, within TX73_002595 at 555.612 kb on - strand, within TX73_002595 at 555.614 kb on + strand, within TX73_002595 at 555.621 kb on - strand, within TX73_002595 at 555.637 kb on + strand, within TX73_002595 at 555.637 kb on + strand, within TX73_002595 at 555.645 kb on - strand, within TX73_002595 at 555.645 kb on - strand, within TX73_002595 at 555.645 kb on - strand, within TX73_002595 at 555.645 kb on - strand, within TX73_002595 at 555.647 kb on + strand, within TX73_002595 at 555.655 kb on - strand, within TX73_002595 at 555.666 kb on + strand, within TX73_002595 at 555.666 kb on + strand, within TX73_002595 at 555.673 kb on + strand, within TX73_002595 at 555.674 kb on - strand, within TX73_002595 at 555.678 kb on + strand, within TX73_002595 at 555.681 kb on - strand, within TX73_002595 at 555.686 kb on - strand, within TX73_002595 at 555.688 kb on + strand, within TX73_002595 at 555.696 kb on - strand, within TX73_002595 at 555.700 kb on + strand, within TX73_002595 at 555.700 kb on + strand, within TX73_002595 at 555.708 kb on - strand, within TX73_002595 at 555.710 kb on - strand, within TX73_002595 at 555.717 kb on - strand, within TX73_002595 at 555.743 kb on + strand, within TX73_002595 at 555.743 kb on + strand, within TX73_002595 at 555.743 kb on + strand, within TX73_002595 at 555.743 kb on + strand, within TX73_002595 at 555.751 kb on - strand, within TX73_002595 at 555.821 kb on + strand, within TX73_002595 at 555.847 kb on + strand, within TX73_002595 at 555.852 kb on + strand, within TX73_002595 at 555.852 kb on + strand, within TX73_002595 at 555.852 kb on + strand, within TX73_002595 at 555.860 kb on - strand, within TX73_002595 at 555.860 kb on - strand, within TX73_002595 at 555.860 kb on - strand, within TX73_002595 at 555.860 kb on - strand, within TX73_002595 at 555.864 kb on + strand, within TX73_002595 at 555.872 kb on - strand, within TX73_002595 at 555.872 kb on - strand, within TX73_002595 at 555.875 kb on + strand, within TX73_002595 at 555.884 kb on - strand, within TX73_002595 at 555.904 kb on - strand, within TX73_002595 at 555.951 kb on - strand, within TX73_002595 at 555.957 kb on - strand, within TX73_002595 at 555.988 kb on + strand, within TX73_002595 at 555.994 kb on + strand, within TX73_002595 at 556.011 kb on + strand, within TX73_002595 at 556.011 kb on + strand, within TX73_002595 at 556.011 kb on + strand, within TX73_002595 at 556.011 kb on + strand, within TX73_002595 at 556.019 kb on - strand, within TX73_002595 at 556.019 kb on - strand, within TX73_002595 at 556.019 kb on - strand, within TX73_002595 at 556.019 kb on - strand, within TX73_002595 at 556.019 kb on - strand, within TX73_002595 at 556.019 kb on - strand, within TX73_002595 at 556.021 kb on - strand, within TX73_002595 at 556.036 kb on - strand, within TX73_002595 at 556.042 kb on + strand, within TX73_002595 at 556.044 kb on - strand, within TX73_002595 at 556.046 kb on + strand, within TX73_002595 at 556.047 kb on + strand, within TX73_002595 at 556.050 kb on - strand, within TX73_002595 at 556.050 kb on - strand, within TX73_002595 at 556.050 kb on - strand, within TX73_002595 at 556.050 kb on - strand, within TX73_002595 at 556.055 kb on - strand, within TX73_002595 at 556.055 kb on - strand, within TX73_002595 at 556.062 kb on - strand, within TX73_002595 at 556.070 kb on - strand, within TX73_002595 at 556.085 kb on - strand, within TX73_002595 at 556.085 kb on - strand, within TX73_002595 at 556.090 kb on - strand, within TX73_002595 at 556.094 kb on - strand at 556.144 kb on + strand at 556.163 kb on + strand at 556.171 kb on - strand at 556.173 kb on + strand at 556.188 kb on - strand at 556.193 kb on + strand at 556.194 kb on + strand at 556.212 kb on + strand at 556.213 kb on + strand at 556.213 kb on + strand at 556.218 kb on + strand at 556.220 kb on - strand at 556.220 kb on - strand at 556.220 kb on - strand at 556.220 kb on - strand at 556.223 kb on - strand at 556.274 kb on - strand at 556.274 kb on - strand at 556.291 kb on + strand at 556.293 kb on - strand at 556.333 kb on + strand, within TX73_002600 at 556.352 kb on + strand, within TX73_002600 at 556.352 kb on + strand, within TX73_002600 at 556.359 kb on - strand, within TX73_002600 at 556.361 kb on + strand, within TX73_002600 at 556.366 kb on - strand, within TX73_002600 at 556.368 kb on + strand, within TX73_002600 at 556.369 kb on - strand, within TX73_002600 at 556.437 kb on + strand, within TX73_002600 at 556.437 kb on + strand, within TX73_002600 at 556.442 kb on + strand, within TX73_002600 at 556.445 kb on - strand, within TX73_002600 at 556.445 kb on - strand, within TX73_002600 at 556.459 kb on + strand, within TX73_002600 at 556.467 kb on + strand, within TX73_002600 at 556.467 kb on + strand, within TX73_002600 at 556.482 kb on - strand, within TX73_002600 at 556.491 kb on - strand, within TX73_002600 at 556.491 kb on - strand, within TX73_002600 at 556.509 kb on - strand, within TX73_002600 at 556.512 kb on + strand, within TX73_002600 at 556.518 kb on + strand, within TX73_002600 at 556.522 kb on + strand at 556.530 kb on - strand at 556.531 kb on - strand at 556.531 kb on - strand at 556.531 kb on - strand at 556.536 kb on + strand at 556.541 kb on + strand at 556.541 kb on + strand at 556.541 kb on + strand at 556.541 kb on + strand at 556.553 kb on + strand at 556.561 kb on - strand at 556.563 kb on + strand at 556.570 kb on - strand at 556.580 kb on - strand at 556.580 kb on - strand at 556.603 kb on - strand at 556.609 kb on + strand at 556.617 kb on - strand at 556.638 kb on - strand at 556.640 kb on + strand at 556.640 kb on + strand at 556.650 kb on + strand at 556.650 kb on + strand at 556.686 kb on - strand at 556.695 kb on + strand at 556.704 kb on + strand, within TX73_002605 at 556.709 kb on + strand, within TX73_002605 at 556.729 kb on - strand, within TX73_002605 at 556.731 kb on - strand, within TX73_002605 at 556.733 kb on - strand, within TX73_002605 at 556.746 kb on - strand, within TX73_002605 at 556.755 kb on - strand, within TX73_002605 at 556.762 kb on + strand, within TX73_002605 at 556.764 kb on + strand, within TX73_002605 at 556.764 kb on + strand, within TX73_002605 at 556.764 kb on + strand, within TX73_002605 at 556.770 kb on - strand, within TX73_002605 at 556.772 kb on - strand, within TX73_002605 at 556.787 kb on + strand, within TX73_002605 at 556.805 kb on + strand, within TX73_002605 at 556.813 kb on - strand, within TX73_002605 at 556.817 kb on + strand, within TX73_002605 at 556.817 kb on - strand, within TX73_002605 at 556.825 kb on - strand, within TX73_002605 at 556.825 kb on - strand, within TX73_002605 at 556.840 kb on + strand, within TX73_002605 at 556.840 kb on + strand, within TX73_002605 at 556.840 kb on + strand, within TX73_002605 at 556.850 kb on + strand, within TX73_002605 at 556.881 kb on + strand, within TX73_002605 at 556.899 kb on - strand, within TX73_002605 at 556.935 kb on - strand, within TX73_002605 at 556.951 kb on - strand, within TX73_002605 at 556.951 kb on - strand, within TX73_002605 at 556.965 kb on + strand, within TX73_002605 at 556.973 kb on - strand, within TX73_002605 at 556.993 kb on - strand, within TX73_002605 at 557.012 kb on - strand, within TX73_002605 at 557.030 kb on + strand, within TX73_002605 at 557.051 kb on - strand, within TX73_002605 at 557.061 kb on + strand, within TX73_002605 at 557.100 kb on - strand, within TX73_002605 at 557.105 kb on - strand, within TX73_002605 at 557.129 kb on - strand, within TX73_002605 at 557.147 kb on + strand, within TX73_002605 at 557.150 kb on - strand, within TX73_002605 at 557.155 kb on - strand, within TX73_002605 at 557.155 kb on - strand, within TX73_002605 at 557.173 kb on - strand, within TX73_002605 at 557.178 kb on + strand, within TX73_002605 at 557.180 kb on + strand, within TX73_002605 at 557.180 kb on + strand, within TX73_002605 at 557.180 kb on + strand, within TX73_002605 at 557.180 kb on + strand, within TX73_002605 at 557.183 kb on + strand, within TX73_002605 at 557.186 kb on - strand, within TX73_002605 at 557.188 kb on - strand, within TX73_002605 at 557.191 kb on - strand, within TX73_002605 at 557.222 kb on + strand, within TX73_002605 at 557.232 kb on + strand, within TX73_002605 at 557.235 kb on - strand, within TX73_002605 at 557.253 kb on + strand, within TX73_002605 at 557.263 kb on - strand, within TX73_002605 at 557.294 kb on + strand, within TX73_002605 at 557.309 kb on + strand, within TX73_002605 at 557.314 kb on + strand, within TX73_002605 at 557.384 kb on + strand, within TX73_002605 at 557.415 kb on + strand, within TX73_002605 at 557.426 kb on + strand, within TX73_002605 at 557.426 kb on + strand, within TX73_002605 at 557.426 kb on + strand, within TX73_002605 at 557.428 kb on + strand, within TX73_002605 at 557.432 kb on - strand, within TX73_002605 at 557.434 kb on - strand, within TX73_002605 at 557.434 kb on - strand, within TX73_002605 at 557.445 kb on + strand, within TX73_002605 at 557.455 kb on + strand, within TX73_002605 at 557.470 kb on - strand, within TX73_002605 at 557.483 kb on - strand, within TX73_002605 at 557.513 kb on + strand, within TX73_002605 at 557.523 kb on + strand, within TX73_002605 at 557.532 kb on - strand, within TX73_002605
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 555,284 - TX73_002590 0.73 +0.1 555,284 - TX73_002590 0.73 -0.4 555,289 - TX73_002590 0.74 -1.3 555,291 - TX73_002590 0.74 -0.4 555,294 - TX73_002590 0.75 -1.0 555,310 + TX73_002590 0.78 -0.1 555,328 - TX73_002590 0.80 +0.3 555,338 + TX73_002590 0.82 +0.7 555,343 + TX73_002590 0.83 -0.4 555,346 - TX73_002590 0.83 +1.7 555,353 + TX73_002590 0.84 +1.7 555,353 + TX73_002590 0.84 -0.0 555,356 + TX73_002590 0.85 -1.1 555,356 + TX73_002590 0.85 -1.1 555,369 - TX73_002590 0.87 -0.1 555,407 + -1.0 555,408 + -2.6 555,424 + +2.2 555,432 - -0.2 555,435 - +1.3 555,457 + -0.5 555,457 + -0.4 555,476 - -0.1 555,497 + -0.2 555,510 - +0.9 555,510 - -0.6 555,510 - +0.1 555,519 + -0.4 555,524 - +1.3 555,532 - -0.5 555,548 - +0.0 555,549 - -0.9 555,555 - +2.3 555,570 + -0.8 555,578 - TX73_002595 0.10 -0.5 555,578 - TX73_002595 0.10 -3.0 555,612 - TX73_002595 0.15 +0.4 555,614 + TX73_002595 0.16 -0.6 555,621 - TX73_002595 0.17 -0.1 555,637 + TX73_002595 0.19 -1.2 555,637 + TX73_002595 0.19 -0.6 555,645 - TX73_002595 0.20 -1.7 555,645 - TX73_002595 0.20 +0.2 555,645 - TX73_002595 0.20 +0.3 555,645 - TX73_002595 0.20 -1.3 555,647 + TX73_002595 0.21 -0.9 555,655 - TX73_002595 0.22 -0.1 555,666 + TX73_002595 0.24 +1.2 555,666 + TX73_002595 0.24 -1.4 555,673 + TX73_002595 0.25 -1.7 555,674 - TX73_002595 0.25 -2.3 555,678 + TX73_002595 0.26 +1.5 555,681 - TX73_002595 0.26 -1.5 555,686 - TX73_002595 0.27 +1.4 555,688 + TX73_002595 0.27 -1.2 555,696 - TX73_002595 0.28 -0.6 555,700 + TX73_002595 0.29 +1.1 555,700 + TX73_002595 0.29 +1.6 555,708 - TX73_002595 0.30 -1.4 555,710 - TX73_002595 0.31 -1.5 555,717 - TX73_002595 0.32 -0.2 555,743 + TX73_002595 0.36 -0.6 555,743 + TX73_002595 0.36 -2.1 555,743 + TX73_002595 0.36 -1.3 555,743 + TX73_002595 0.36 -0.9 555,751 - TX73_002595 0.37 -1.6 555,821 + TX73_002595 0.48 -0.0 555,847 + TX73_002595 0.52 +1.5 555,852 + TX73_002595 0.53 -0.5 555,852 + TX73_002595 0.53 -1.3 555,852 + TX73_002595 0.53 -0.7 555,860 - TX73_002595 0.54 -2.6 555,860 - TX73_002595 0.54 -0.9 555,860 - TX73_002595 0.54 -0.6 555,860 - TX73_002595 0.54 -2.3 555,864 + TX73_002595 0.54 +0.8 555,872 - TX73_002595 0.56 -1.9 555,872 - TX73_002595 0.56 -2.2 555,875 + TX73_002595 0.56 -1.1 555,884 - TX73_002595 0.58 -1.7 555,904 - TX73_002595 0.61 -0.7 555,951 - TX73_002595 0.68 -0.3 555,957 - TX73_002595 0.69 +0.1 555,988 + TX73_002595 0.74 +2.3 555,994 + TX73_002595 0.75 +0.4 556,011 + TX73_002595 0.77 -1.9 556,011 + TX73_002595 0.77 -1.1 556,011 + TX73_002595 0.77 +1.1 556,011 + TX73_002595 0.77 -0.6 556,019 - TX73_002595 0.78 -1.6 556,019 - TX73_002595 0.78 -1.6 556,019 - TX73_002595 0.78 +2.4 556,019 - TX73_002595 0.78 -0.5 556,019 - TX73_002595 0.78 +0.4 556,019 - TX73_002595 0.78 +1.9 556,021 - TX73_002595 0.79 -1.7 556,036 - TX73_002595 0.81 -0.3 556,042 + TX73_002595 0.82 -0.5 556,044 - TX73_002595 0.82 +1.3 556,046 + TX73_002595 0.83 -1.2 556,047 + TX73_002595 0.83 -0.2 556,050 - TX73_002595 0.83 -0.2 556,050 - TX73_002595 0.83 -2.0 556,050 - TX73_002595 0.83 +1.4 556,050 - TX73_002595 0.83 +1.3 556,055 - TX73_002595 0.84 -1.3 556,055 - TX73_002595 0.84 +1.5 556,062 - TX73_002595 0.85 -1.4 556,070 - TX73_002595 0.86 +0.0 556,085 - TX73_002595 0.89 -1.3 556,085 - TX73_002595 0.89 -2.1 556,090 - TX73_002595 0.89 -0.5 556,094 - +0.6 556,144 + +0.1 556,163 + +2.6 556,171 - +0.5 556,173 + -2.5 556,188 - -0.7 556,193 + -3.5 556,194 + +0.7 556,212 + -0.4 556,213 + +2.9 556,213 + -0.2 556,218 + +1.1 556,220 - +0.3 556,220 - +1.8 556,220 - -0.2 556,220 - -0.3 556,223 - -1.1 556,274 - -1.8 556,274 - +0.7 556,291 + -0.7 556,293 - +0.1 556,333 + TX73_002600 0.20 -1.5 556,352 + TX73_002600 0.27 +0.2 556,352 + TX73_002600 0.27 -0.2 556,359 - TX73_002600 0.30 -2.4 556,361 + TX73_002600 0.31 -2.1 556,366 - TX73_002600 0.33 -1.4 556,368 + TX73_002600 0.33 -0.2 556,369 - TX73_002600 0.34 +0.8 556,437 + TX73_002600 0.59 +0.7 556,437 + TX73_002600 0.59 -0.1 556,442 + TX73_002600 0.61 -0.8 556,445 - TX73_002600 0.62 -0.3 556,445 - TX73_002600 0.62 +0.5 556,459 + TX73_002600 0.67 -1.4 556,467 + TX73_002600 0.70 -0.9 556,467 + TX73_002600 0.70 -1.3 556,482 - TX73_002600 0.76 -0.5 556,491 - TX73_002600 0.79 -1.9 556,491 - TX73_002600 0.79 +2.4 556,509 - TX73_002600 0.86 -1.3 556,512 + TX73_002600 0.87 +0.3 556,518 + TX73_002600 0.89 +1.1 556,522 + -1.1 556,530 - -2.7 556,531 - -2.4 556,531 - -2.3 556,531 - -2.0 556,536 + -1.1 556,541 + +0.8 556,541 + -0.3 556,541 + +1.3 556,541 + +0.2 556,553 + +0.4 556,561 - +1.6 556,563 + -2.1 556,570 - -0.1 556,580 - -2.0 556,580 - -0.6 556,603 - -0.1 556,609 + -0.6 556,617 - -0.2 556,638 - +0.0 556,640 + +0.4 556,640 + -1.0 556,650 + +0.4 556,650 + +0.3 556,686 - -2.0 556,695 + +0.0 556,704 + TX73_002605 0.10 +2.0 556,709 + TX73_002605 0.11 +0.4 556,729 - TX73_002605 0.12 -0.0 556,731 - TX73_002605 0.12 -0.2 556,733 - TX73_002605 0.12 -2.0 556,746 - TX73_002605 0.13 -0.7 556,755 - TX73_002605 0.14 -2.1 556,762 + TX73_002605 0.14 -0.4 556,764 + TX73_002605 0.15 +0.0 556,764 + TX73_002605 0.15 +0.1 556,764 + TX73_002605 0.15 +0.6 556,770 - TX73_002605 0.15 -2.1 556,772 - TX73_002605 0.15 -0.0 556,787 + TX73_002605 0.16 -0.9 556,805 + TX73_002605 0.18 +0.1 556,813 - TX73_002605 0.18 -0.3 556,817 + TX73_002605 0.19 -0.1 556,817 - TX73_002605 0.19 +0.2 556,825 - TX73_002605 0.19 +0.6 556,825 - TX73_002605 0.19 -1.9 556,840 + TX73_002605 0.20 -1.2 556,840 + TX73_002605 0.20 +1.2 556,840 + TX73_002605 0.20 -0.0 556,850 + TX73_002605 0.21 -0.6 556,881 + TX73_002605 0.23 -0.8 556,899 - TX73_002605 0.25 +0.4 556,935 - TX73_002605 0.27 +1.9 556,951 - TX73_002605 0.28 -0.4 556,951 - TX73_002605 0.28 +0.9 556,965 + TX73_002605 0.29 +0.6 556,973 - TX73_002605 0.30 +0.3 556,993 - TX73_002605 0.31 +0.5 557,012 - TX73_002605 0.33 -2.5 557,030 + TX73_002605 0.34 +0.3 557,051 - TX73_002605 0.36 +0.4 557,061 + TX73_002605 0.36 +1.5 557,100 - TX73_002605 0.39 -0.8 557,105 - TX73_002605 0.40 -0.2 557,129 - TX73_002605 0.41 +1.6 557,147 + TX73_002605 0.43 +1.4 557,150 - TX73_002605 0.43 +1.5 557,155 - TX73_002605 0.43 -1.0 557,155 - TX73_002605 0.43 +0.4 557,173 - TX73_002605 0.45 +1.0 557,178 + TX73_002605 0.45 +0.6 557,180 + TX73_002605 0.45 +0.4 557,180 + TX73_002605 0.45 +1.3 557,180 + TX73_002605 0.45 -1.4 557,180 + TX73_002605 0.45 +0.9 557,183 + TX73_002605 0.45 -0.2 557,186 - TX73_002605 0.46 -2.6 557,188 - TX73_002605 0.46 -1.4 557,191 - TX73_002605 0.46 +1.7 557,222 + TX73_002605 0.48 +0.3 557,232 + TX73_002605 0.49 -3.1 557,235 - TX73_002605 0.49 -0.5 557,253 + TX73_002605 0.51 +0.2 557,263 - TX73_002605 0.51 +1.1 557,294 + TX73_002605 0.54 -1.0 557,309 + TX73_002605 0.55 -0.1 557,314 + TX73_002605 0.55 -0.4 557,384 + TX73_002605 0.60 -2.4 557,415 + TX73_002605 0.62 -0.2 557,426 + TX73_002605 0.63 -1.0 557,426 + TX73_002605 0.63 -0.5 557,426 + TX73_002605 0.63 +1.0 557,428 + TX73_002605 0.63 -0.1 557,432 - TX73_002605 0.64 -0.3 557,434 - TX73_002605 0.64 -0.9 557,434 - TX73_002605 0.64 -1.9 557,445 + TX73_002605 0.65 -0.3 557,455 + TX73_002605 0.65 -1.1 557,470 - TX73_002605 0.66 -0.4 557,483 - TX73_002605 0.67 -1.5 557,513 + TX73_002605 0.70 -0.5 557,523 + TX73_002605 0.70 +1.7 557,532 - TX73_002605 0.71 -2.3
Or see this region's nucleotide sequence