Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002255 and TX73_002260 overlap by 1 nucleotides TX73_002260 and TX73_002265 are separated by 173 nucleotides
TX73_002255: TX73_002255 - tRNA pseudouridine(55) synthase TruB, at 478,699 to 479,799
_002255
TX73_002260: TX73_002260 - 30S ribosome-binding factor RbfA, at 479,799 to 480,212
_002260
TX73_002265: TX73_002265 - translation initiation factor IF-2, at 480,386 to 483,037
_002265
Position (kb) 479
480
481 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 478.803 kb on - strand at 478.823 kb on - strand, within TX73_002255 at 478.823 kb on - strand, within TX73_002255 at 478.827 kb on - strand, within TX73_002255 at 478.827 kb on - strand, within TX73_002255 at 478.827 kb on - strand, within TX73_002255 at 478.827 kb on - strand, within TX73_002255 at 478.832 kb on - strand, within TX73_002255 at 478.845 kb on - strand, within TX73_002255 at 478.871 kb on - strand, within TX73_002255 at 478.885 kb on - strand, within TX73_002255 at 478.889 kb on - strand, within TX73_002255 at 478.908 kb on - strand, within TX73_002255 at 478.915 kb on - strand, within TX73_002255 at 478.933 kb on - strand, within TX73_002255 at 478.948 kb on - strand, within TX73_002255 at 478.956 kb on - strand, within TX73_002255 at 479.045 kb on + strand, within TX73_002255 at 479.045 kb on + strand, within TX73_002255 at 479.045 kb on + strand, within TX73_002255 at 479.046 kb on + strand, within TX73_002255 at 479.047 kb on + strand, within TX73_002255 at 479.047 kb on + strand, within TX73_002255 at 479.052 kb on + strand, within TX73_002255 at 479.053 kb on - strand, within TX73_002255 at 479.053 kb on - strand, within TX73_002255 at 479.055 kb on - strand, within TX73_002255 at 479.060 kb on - strand, within TX73_002255 at 479.062 kb on + strand, within TX73_002255 at 479.074 kb on + strand, within TX73_002255 at 479.074 kb on + strand, within TX73_002255 at 479.074 kb on + strand, within TX73_002255 at 479.082 kb on - strand, within TX73_002255 at 479.082 kb on - strand, within TX73_002255 at 479.087 kb on - strand, within TX73_002255 at 479.087 kb on - strand, within TX73_002255 at 479.097 kb on - strand, within TX73_002255 at 479.106 kb on + strand, within TX73_002255 at 479.114 kb on - strand, within TX73_002255 at 479.129 kb on - strand, within TX73_002255 at 479.143 kb on - strand, within TX73_002255 at 479.150 kb on + strand, within TX73_002255 at 479.158 kb on - strand, within TX73_002255 at 479.204 kb on + strand, within TX73_002255 at 479.224 kb on - strand, within TX73_002255 at 479.235 kb on - strand, within TX73_002255 at 479.246 kb on + strand, within TX73_002255 at 479.248 kb on - strand, within TX73_002255 at 479.253 kb on + strand, within TX73_002255 at 479.254 kb on - strand, within TX73_002255 at 479.261 kb on - strand, within TX73_002255 at 479.263 kb on - strand, within TX73_002255 at 479.278 kb on - strand, within TX73_002255 at 479.278 kb on - strand, within TX73_002255 at 479.285 kb on + strand, within TX73_002255 at 479.291 kb on - strand, within TX73_002255 at 479.293 kb on - strand, within TX73_002255 at 479.293 kb on - strand, within TX73_002255 at 479.293 kb on - strand, within TX73_002255 at 479.316 kb on + strand, within TX73_002255 at 479.344 kb on + strand, within TX73_002255 at 479.347 kb on - strand, within TX73_002255 at 479.347 kb on - strand, within TX73_002255 at 479.350 kb on - strand, within TX73_002255 at 479.364 kb on + strand, within TX73_002255 at 479.364 kb on + strand, within TX73_002255 at 479.372 kb on - strand, within TX73_002255 at 479.372 kb on - strand, within TX73_002255 at 479.372 kb on - strand, within TX73_002255 at 479.374 kb on + strand, within TX73_002255 at 479.374 kb on + strand, within TX73_002255 at 479.377 kb on - strand, within TX73_002255 at 479.382 kb on - strand, within TX73_002255 at 479.382 kb on - strand, within TX73_002255 at 479.382 kb on - strand, within TX73_002255 at 479.382 kb on - strand, within TX73_002255 at 479.382 kb on - strand, within TX73_002255 at 479.420 kb on + strand, within TX73_002255 at 479.420 kb on + strand, within TX73_002255 at 479.425 kb on + strand, within TX73_002255 at 479.425 kb on + strand, within TX73_002255 at 479.428 kb on - strand, within TX73_002255 at 479.428 kb on - strand, within TX73_002255 at 479.431 kb on + strand, within TX73_002255 at 479.438 kb on + strand, within TX73_002255 at 479.438 kb on - strand, within TX73_002255 at 479.467 kb on - strand, within TX73_002255 at 479.474 kb on + strand, within TX73_002255 at 479.474 kb on + strand, within TX73_002255 at 479.482 kb on - strand, within TX73_002255 at 479.482 kb on - strand, within TX73_002255 at 479.482 kb on - strand, within TX73_002255 at 479.482 kb on - strand, within TX73_002255 at 479.482 kb on - strand, within TX73_002255 at 479.482 kb on - strand, within TX73_002255 at 479.483 kb on + strand, within TX73_002255 at 479.490 kb on - strand, within TX73_002255 at 479.505 kb on + strand, within TX73_002255 at 479.523 kb on - strand, within TX73_002255 at 479.530 kb on + strand, within TX73_002255 at 479.531 kb on - strand, within TX73_002255 at 479.555 kb on + strand, within TX73_002255 at 479.563 kb on - strand, within TX73_002255 at 479.569 kb on + strand, within TX73_002255 at 479.569 kb on + strand, within TX73_002255 at 479.569 kb on + strand, within TX73_002255 at 479.589 kb on + strand, within TX73_002255 at 479.589 kb on + strand, within TX73_002255 at 479.590 kb on + strand, within TX73_002255 at 479.593 kb on - strand, within TX73_002255 at 479.596 kb on + strand, within TX73_002255 at 479.598 kb on - strand, within TX73_002255 at 479.598 kb on - strand, within TX73_002255 at 479.603 kb on - strand, within TX73_002255 at 479.609 kb on + strand, within TX73_002255 at 479.614 kb on + strand, within TX73_002255 at 479.614 kb on + strand, within TX73_002255 at 479.614 kb on + strand, within TX73_002255 at 479.614 kb on + strand, within TX73_002255 at 479.614 kb on + strand, within TX73_002255 at 479.617 kb on - strand, within TX73_002255 at 479.622 kb on - strand, within TX73_002255 at 479.622 kb on - strand, within TX73_002255 at 479.622 kb on - strand, within TX73_002255 at 479.622 kb on - strand, within TX73_002255 at 479.622 kb on - strand, within TX73_002255 at 479.622 kb on - strand, within TX73_002255 at 479.624 kb on + strand, within TX73_002255 at 479.629 kb on + strand, within TX73_002255 at 479.629 kb on + strand, within TX73_002255 at 479.629 kb on + strand, within TX73_002255 at 479.630 kb on - strand, within TX73_002255 at 479.632 kb on - strand, within TX73_002255 at 479.632 kb on - strand, within TX73_002255 at 479.636 kb on + strand, within TX73_002255 at 479.637 kb on - strand, within TX73_002255 at 479.637 kb on - strand, within TX73_002255 at 479.637 kb on - strand, within TX73_002255 at 479.658 kb on + strand, within TX73_002255 at 479.684 kb on + strand, within TX73_002255 at 479.712 kb on + strand at 479.712 kb on + strand at 479.712 kb on + strand at 479.712 kb on + strand at 479.720 kb on - strand at 479.720 kb on - strand at 479.720 kb on - strand at 479.746 kb on + strand at 479.752 kb on - strand at 479.766 kb on - strand at 479.783 kb on - strand at 479.786 kb on - strand at 479.796 kb on - strand at 479.797 kb on + strand at 479.797 kb on + strand at 479.797 kb on + strand at 479.797 kb on + strand at 479.797 kb on + strand at 479.805 kb on - strand at 479.805 kb on - strand at 479.805 kb on - strand at 479.805 kb on - strand at 479.813 kb on + strand at 479.829 kb on + strand at 479.834 kb on + strand at 479.837 kb on - strand at 479.839 kb on + strand at 479.855 kb on - strand, within TX73_002260 at 480.200 kb on - strand at 480.200 kb on - strand at 480.221 kb on + strand at 480.221 kb on + strand at 480.256 kb on + strand at 480.266 kb on + strand at 480.273 kb on - strand at 480.274 kb on - strand at 480.296 kb on + strand at 480.346 kb on - strand at 480.360 kb on - strand at 480.363 kb on + strand at 480.391 kb on - strand at 480.400 kb on + strand at 480.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 478,803 - -0.1 478,823 - TX73_002255 0.11 -2.6 478,823 - TX73_002255 0.11 +1.1 478,827 - TX73_002255 0.12 +0.1 478,827 - TX73_002255 0.12 +0.2 478,827 - TX73_002255 0.12 -1.9 478,827 - TX73_002255 0.12 -3.9 478,832 - TX73_002255 0.12 +0.3 478,845 - TX73_002255 0.13 -0.0 478,871 - TX73_002255 0.16 -0.6 478,885 - TX73_002255 0.17 -0.7 478,889 - TX73_002255 0.17 -0.5 478,908 - TX73_002255 0.19 +1.6 478,915 - TX73_002255 0.20 -0.7 478,933 - TX73_002255 0.21 +0.1 478,948 - TX73_002255 0.23 -1.5 478,956 - TX73_002255 0.23 -2.0 479,045 + TX73_002255 0.31 -2.5 479,045 + TX73_002255 0.31 +0.2 479,045 + TX73_002255 0.31 -0.9 479,046 + TX73_002255 0.32 -1.3 479,047 + TX73_002255 0.32 -0.0 479,047 + TX73_002255 0.32 -0.6 479,052 + TX73_002255 0.32 -0.3 479,053 - TX73_002255 0.32 -2.2 479,053 - TX73_002255 0.32 -0.5 479,055 - TX73_002255 0.32 -1.7 479,060 - TX73_002255 0.33 +0.2 479,062 + TX73_002255 0.33 -1.5 479,074 + TX73_002255 0.34 -0.7 479,074 + TX73_002255 0.34 -0.9 479,074 + TX73_002255 0.34 +0.9 479,082 - TX73_002255 0.35 -0.1 479,082 - TX73_002255 0.35 -0.1 479,087 - TX73_002255 0.35 -0.8 479,087 - TX73_002255 0.35 -1.3 479,097 - TX73_002255 0.36 +0.6 479,106 + TX73_002255 0.37 -0.9 479,114 - TX73_002255 0.38 -0.1 479,129 - TX73_002255 0.39 -0.6 479,143 - TX73_002255 0.40 -1.8 479,150 + TX73_002255 0.41 +3.6 479,158 - TX73_002255 0.42 +0.3 479,204 + TX73_002255 0.46 -0.5 479,224 - TX73_002255 0.48 -0.1 479,235 - TX73_002255 0.49 +0.4 479,246 + TX73_002255 0.50 +0.4 479,248 - TX73_002255 0.50 +0.5 479,253 + TX73_002255 0.50 -1.3 479,254 - TX73_002255 0.50 -0.2 479,261 - TX73_002255 0.51 -1.6 479,263 - TX73_002255 0.51 +0.1 479,278 - TX73_002255 0.53 +1.8 479,278 - TX73_002255 0.53 -1.5 479,285 + TX73_002255 0.53 -0.6 479,291 - TX73_002255 0.54 -0.2 479,293 - TX73_002255 0.54 +0.5 479,293 - TX73_002255 0.54 -0.4 479,293 - TX73_002255 0.54 +2.0 479,316 + TX73_002255 0.56 +0.3 479,344 + TX73_002255 0.59 -1.7 479,347 - TX73_002255 0.59 -0.9 479,347 - TX73_002255 0.59 +0.7 479,350 - TX73_002255 0.59 +0.3 479,364 + TX73_002255 0.60 -1.7 479,364 + TX73_002255 0.60 +1.3 479,372 - TX73_002255 0.61 -1.7 479,372 - TX73_002255 0.61 +0.2 479,372 - TX73_002255 0.61 -2.4 479,374 + TX73_002255 0.61 -0.7 479,374 + TX73_002255 0.61 -0.9 479,377 - TX73_002255 0.62 -0.8 479,382 - TX73_002255 0.62 -0.8 479,382 - TX73_002255 0.62 -1.9 479,382 - TX73_002255 0.62 -1.8 479,382 - TX73_002255 0.62 +0.4 479,382 - TX73_002255 0.62 +2.6 479,420 + TX73_002255 0.65 +0.1 479,420 + TX73_002255 0.65 +1.6 479,425 + TX73_002255 0.66 -2.5 479,425 + TX73_002255 0.66 +1.2 479,428 - TX73_002255 0.66 -0.6 479,428 - TX73_002255 0.66 -2.8 479,431 + TX73_002255 0.66 -1.4 479,438 + TX73_002255 0.67 -0.2 479,438 - TX73_002255 0.67 +0.2 479,467 - TX73_002255 0.70 +0.1 479,474 + TX73_002255 0.70 +0.3 479,474 + TX73_002255 0.70 -1.0 479,482 - TX73_002255 0.71 -1.6 479,482 - TX73_002255 0.71 -1.3 479,482 - TX73_002255 0.71 +0.4 479,482 - TX73_002255 0.71 -1.4 479,482 - TX73_002255 0.71 +0.1 479,482 - TX73_002255 0.71 +0.2 479,483 + TX73_002255 0.71 -0.2 479,490 - TX73_002255 0.72 -0.7 479,505 + TX73_002255 0.73 -0.9 479,523 - TX73_002255 0.75 +2.1 479,530 + TX73_002255 0.75 -3.5 479,531 - TX73_002255 0.76 +0.3 479,555 + TX73_002255 0.78 -0.6 479,563 - TX73_002255 0.78 -1.5 479,569 + TX73_002255 0.79 +2.8 479,569 + TX73_002255 0.79 -1.9 479,569 + TX73_002255 0.79 -1.0 479,589 + TX73_002255 0.81 -3.1 479,589 + TX73_002255 0.81 -1.4 479,590 + TX73_002255 0.81 -0.3 479,593 - TX73_002255 0.81 -3.0 479,596 + TX73_002255 0.81 -2.2 479,598 - TX73_002255 0.82 -2.5 479,598 - TX73_002255 0.82 -0.2 479,603 - TX73_002255 0.82 +0.8 479,609 + TX73_002255 0.83 -2.4 479,614 + TX73_002255 0.83 +0.1 479,614 + TX73_002255 0.83 +1.1 479,614 + TX73_002255 0.83 -0.1 479,614 + TX73_002255 0.83 -1.4 479,614 + TX73_002255 0.83 -1.0 479,617 - TX73_002255 0.83 -0.6 479,622 - TX73_002255 0.84 -2.5 479,622 - TX73_002255 0.84 +0.4 479,622 - TX73_002255 0.84 -0.5 479,622 - TX73_002255 0.84 -3.0 479,622 - TX73_002255 0.84 -1.7 479,622 - TX73_002255 0.84 -0.4 479,624 + TX73_002255 0.84 -0.3 479,629 + TX73_002255 0.84 -0.9 479,629 + TX73_002255 0.84 -0.9 479,629 + TX73_002255 0.84 -1.9 479,630 - TX73_002255 0.85 -1.6 479,632 - TX73_002255 0.85 +1.0 479,632 - TX73_002255 0.85 +0.9 479,636 + TX73_002255 0.85 -1.8 479,637 - TX73_002255 0.85 +0.2 479,637 - TX73_002255 0.85 -3.1 479,637 - TX73_002255 0.85 +0.1 479,658 + TX73_002255 0.87 +0.1 479,684 + TX73_002255 0.89 -0.0 479,712 + -1.6 479,712 + -0.4 479,712 + -0.8 479,712 + +1.0 479,720 - -0.8 479,720 - -0.3 479,720 - -0.2 479,746 + -0.8 479,752 - +0.8 479,766 - -2.0 479,783 - -1.7 479,786 - +1.9 479,796 - +0.6 479,797 + +0.0 479,797 + -1.2 479,797 + +0.8 479,797 + -0.3 479,797 + +0.0 479,805 - -0.9 479,805 - +0.6 479,805 - +1.8 479,805 - -0.7 479,813 + -0.7 479,829 + +0.2 479,834 + +1.7 479,837 - -0.9 479,839 + +0.2 479,855 - TX73_002260 0.14 -1.4 480,200 - -0.2 480,200 - -0.6 480,221 + +0.1 480,221 + -0.5 480,256 + -0.3 480,266 + -0.7 480,273 - -0.5 480,274 - +0.7 480,296 + -0.1 480,346 - +0.5 480,360 - +1.9 480,363 + +0.8 480,391 - +1.6 480,400 + +2.3 480,428 - -1.6
Or see this region's nucleotide sequence