Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002090 and TX73_002095 are separated by 18 nucleotides TX73_002095 and TX73_002100 are separated by 82 nucleotides TX73_002100 and TX73_002105 are separated by 199 nucleotides TX73_002105 and TX73_002110 are separated by 3 nucleotides
TX73_002090: TX73_002090 - TetR/AcrR family transcriptional regulator, at 442,870 to 443,490
_002090
TX73_002095: TX73_002095 - YkvA family protein, at 443,509 to 443,883
_002095
TX73_002100: TX73_002100 - 4a-hydroxytetrahydrobiopterin dehydratase, at 443,966 to 444,268
_002100
TX73_002105: TX73_002105 - TAXI family TRAP transporter solute-binding subunit, at 444,468 to 445,856
_002105
TX73_002110: TX73_002110 - PepSY domain-containing protein, at 445,860 to 447,305
_002110
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.475 kb on + strand at 443.485 kb on + strand at 443.485 kb on + strand at 443.485 kb on + strand at 443.485 kb on + strand at 443.492 kb on - strand at 443.493 kb on - strand at 443.493 kb on - strand at 443.493 kb on - strand at 443.516 kb on - strand at 443.520 kb on + strand at 443.534 kb on - strand at 443.562 kb on + strand, within TX73_002095 at 443.570 kb on - strand, within TX73_002095 at 443.570 kb on - strand, within TX73_002095 at 443.578 kb on + strand, within TX73_002095 at 443.692 kb on + strand, within TX73_002095 at 443.695 kb on - strand, within TX73_002095 at 443.710 kb on - strand, within TX73_002095 at 443.740 kb on + strand, within TX73_002095 at 443.748 kb on - strand, within TX73_002095 at 443.748 kb on - strand, within TX73_002095 at 443.766 kb on - strand, within TX73_002095 at 443.781 kb on + strand, within TX73_002095 at 443.789 kb on + strand, within TX73_002095 at 443.823 kb on + strand, within TX73_002095 at 443.831 kb on - strand, within TX73_002095 at 443.831 kb on - strand, within TX73_002095 at 443.853 kb on - strand at 443.861 kb on - strand at 443.862 kb on - strand at 443.876 kb on + strand at 443.877 kb on - strand at 443.919 kb on + strand at 443.949 kb on - strand at 444.021 kb on - strand, within TX73_002100 at 444.053 kb on + strand, within TX73_002100 at 444.061 kb on - strand, within TX73_002100 at 444.066 kb on - strand, within TX73_002100 at 444.074 kb on + strand, within TX73_002100 at 444.143 kb on + strand, within TX73_002100 at 444.215 kb on + strand, within TX73_002100 at 444.280 kb on - strand at 444.283 kb on - strand at 444.285 kb on - strand at 444.403 kb on + strand at 444.405 kb on - strand at 444.413 kb on + strand at 444.463 kb on + strand at 444.465 kb on - strand at 444.489 kb on - strand at 444.507 kb on + strand at 444.539 kb on + strand at 444.566 kb on - strand at 444.585 kb on + strand at 444.586 kb on + strand at 444.690 kb on + strand, within TX73_002105 at 444.710 kb on + strand, within TX73_002105 at 444.723 kb on - strand, within TX73_002105 at 444.731 kb on + strand, within TX73_002105 at 444.745 kb on + strand, within TX73_002105 at 444.755 kb on + strand, within TX73_002105 at 444.791 kb on + strand, within TX73_002105 at 444.791 kb on + strand, within TX73_002105 at 444.791 kb on + strand, within TX73_002105 at 444.806 kb on + strand, within TX73_002105 at 444.832 kb on - strand, within TX73_002105 at 444.832 kb on - strand, within TX73_002105 at 444.848 kb on + strand, within TX73_002105 at 444.863 kb on - strand, within TX73_002105 at 444.869 kb on - strand, within TX73_002105 at 444.937 kb on - strand, within TX73_002105 at 444.951 kb on + strand, within TX73_002105 at 444.969 kb on - strand, within TX73_002105 at 444.974 kb on + strand, within TX73_002105 at 445.006 kb on + strand, within TX73_002105 at 445.043 kb on - strand, within TX73_002105 at 445.090 kb on - strand, within TX73_002105 at 445.129 kb on - strand, within TX73_002105 at 445.153 kb on - strand, within TX73_002105 at 445.193 kb on + strand, within TX73_002105 at 445.203 kb on + strand, within TX73_002105 at 445.208 kb on - strand, within TX73_002105 at 445.280 kb on + strand, within TX73_002105 at 445.290 kb on - strand, within TX73_002105 at 445.305 kb on + strand, within TX73_002105 at 445.320 kb on - strand, within TX73_002105 at 445.422 kb on + strand, within TX73_002105 at 445.496 kb on + strand, within TX73_002105 at 445.534 kb on - strand, within TX73_002105 at 445.562 kb on + strand, within TX73_002105 at 445.585 kb on + strand, within TX73_002105 at 445.585 kb on + strand, within TX73_002105 at 445.587 kb on + strand, within TX73_002105 at 445.616 kb on + strand, within TX73_002105 at 445.616 kb on + strand, within TX73_002105 at 445.624 kb on - strand, within TX73_002105 at 445.642 kb on + strand, within TX73_002105 at 445.657 kb on + strand, within TX73_002105 at 445.683 kb on + strand, within TX73_002105 at 445.691 kb on + strand, within TX73_002105 at 445.745 kb on + strand at 445.834 kb on + strand at 445.834 kb on + strand at 445.834 kb on + strand at 445.847 kb on + strand at 445.851 kb on + strand at 445.851 kb on + strand at 445.851 kb on + strand at 445.851 kb on + strand at 445.851 kb on + strand at 445.853 kb on + strand at 445.856 kb on + strand at 445.859 kb on - strand at 445.859 kb on - strand at 445.859 kb on - strand at 445.884 kb on + strand at 445.962 kb on - strand at 445.978 kb on - strand at 446.048 kb on + strand, within TX73_002110 at 446.063 kb on - strand, within TX73_002110 at 446.098 kb on + strand, within TX73_002110 at 446.101 kb on - strand, within TX73_002110 at 446.119 kb on - strand, within TX73_002110 at 446.129 kb on + strand, within TX73_002110 at 446.160 kb on - strand, within TX73_002110 at 446.160 kb on - strand, within TX73_002110 at 446.170 kb on - strand, within TX73_002110 at 446.201 kb on - strand, within TX73_002110 at 446.302 kb on - strand, within TX73_002110 at 446.312 kb on - strand, within TX73_002110 at 446.312 kb on - strand, within TX73_002110 at 446.312 kb on - strand, within TX73_002110 at 446.358 kb on - strand, within TX73_002110 at 446.372 kb on - strand, within TX73_002110 at 446.404 kb on + strand, within TX73_002110 at 446.404 kb on + strand, within TX73_002110 at 446.409 kb on + strand, within TX73_002110 at 446.412 kb on - strand, within TX73_002110 at 446.412 kb on - strand, within TX73_002110 at 446.417 kb on - strand, within TX73_002110 at 446.417 kb on - strand, within TX73_002110 at 446.425 kb on - strand, within TX73_002110 at 446.432 kb on + strand, within TX73_002110 at 446.442 kb on + strand, within TX73_002110 at 446.514 kb on - strand, within TX73_002110 at 446.567 kb on - strand, within TX73_002110 at 446.598 kb on + strand, within TX73_002110 at 446.606 kb on - strand, within TX73_002110 at 446.631 kb on + strand, within TX73_002110 at 446.643 kb on + strand, within TX73_002110 at 446.655 kb on + strand, within TX73_002110 at 446.696 kb on - strand, within TX73_002110 at 446.753 kb on + strand, within TX73_002110 at 446.791 kb on + strand, within TX73_002110 at 446.791 kb on + strand, within TX73_002110 at 446.791 kb on + strand, within TX73_002110 at 446.799 kb on - strand, within TX73_002110 at 446.799 kb on - strand, within TX73_002110 at 446.799 kb on - strand, within TX73_002110 at 446.799 kb on - strand, within TX73_002110 at 446.799 kb on - strand, within TX73_002110
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 443,475 + -0.4 443,485 + -0.2 443,485 + -0.1 443,485 + -1.9 443,485 + +1.9 443,492 - -2.7 443,493 - -1.2 443,493 - +2.3 443,493 - +0.4 443,516 - -0.1 443,520 + +0.0 443,534 - +2.6 443,562 + TX73_002095 0.14 -2.0 443,570 - TX73_002095 0.16 +0.1 443,570 - TX73_002095 0.16 -2.7 443,578 + TX73_002095 0.18 +2.1 443,692 + TX73_002095 0.49 -1.3 443,695 - TX73_002095 0.50 +0.7 443,710 - TX73_002095 0.54 -0.7 443,740 + TX73_002095 0.62 -0.7 443,748 - TX73_002095 0.64 -1.2 443,748 - TX73_002095 0.64 +0.5 443,766 - TX73_002095 0.69 -0.9 443,781 + TX73_002095 0.73 -2.6 443,789 + TX73_002095 0.75 -2.2 443,823 + TX73_002095 0.84 -0.4 443,831 - TX73_002095 0.86 -0.3 443,831 - TX73_002095 0.86 -2.8 443,853 - -2.4 443,861 - +0.9 443,862 - +1.8 443,876 + -0.8 443,877 - +0.5 443,919 + +1.0 443,949 - -0.8 444,021 - TX73_002100 0.18 +1.7 444,053 + TX73_002100 0.29 -0.2 444,061 - TX73_002100 0.31 +0.0 444,066 - TX73_002100 0.33 -0.5 444,074 + TX73_002100 0.36 +2.2 444,143 + TX73_002100 0.58 +0.4 444,215 + TX73_002100 0.82 +1.2 444,280 - -1.3 444,283 - -1.1 444,285 - +1.5 444,403 + +0.2 444,405 - -2.0 444,413 + -0.3 444,463 + -0.4 444,465 - +0.4 444,489 - -1.8 444,507 + +1.5 444,539 + -1.5 444,566 - +0.7 444,585 + +0.4 444,586 + +0.4 444,690 + TX73_002105 0.16 -0.2 444,710 + TX73_002105 0.17 -2.2 444,723 - TX73_002105 0.18 -0.7 444,731 + TX73_002105 0.19 +1.3 444,745 + TX73_002105 0.20 -0.2 444,755 + TX73_002105 0.21 -1.3 444,791 + TX73_002105 0.23 -0.7 444,791 + TX73_002105 0.23 -0.8 444,791 + TX73_002105 0.23 -1.9 444,806 + TX73_002105 0.24 +1.4 444,832 - TX73_002105 0.26 +1.0 444,832 - TX73_002105 0.26 -0.4 444,848 + TX73_002105 0.27 -0.7 444,863 - TX73_002105 0.28 -1.4 444,869 - TX73_002105 0.29 -3.4 444,937 - TX73_002105 0.34 -2.3 444,951 + TX73_002105 0.35 -1.7 444,969 - TX73_002105 0.36 -0.0 444,974 + TX73_002105 0.36 -0.7 445,006 + TX73_002105 0.39 +2.1 445,043 - TX73_002105 0.41 +1.4 445,090 - TX73_002105 0.45 -0.9 445,129 - TX73_002105 0.48 -1.4 445,153 - TX73_002105 0.49 -2.0 445,193 + TX73_002105 0.52 -0.8 445,203 + TX73_002105 0.53 +1.1 445,208 - TX73_002105 0.53 +0.5 445,280 + TX73_002105 0.58 +0.2 445,290 - TX73_002105 0.59 -1.5 445,305 + TX73_002105 0.60 +0.4 445,320 - TX73_002105 0.61 -0.7 445,422 + TX73_002105 0.69 +0.6 445,496 + TX73_002105 0.74 +0.2 445,534 - TX73_002105 0.77 +0.2 445,562 + TX73_002105 0.79 -0.7 445,585 + TX73_002105 0.80 -0.3 445,585 + TX73_002105 0.80 +0.6 445,587 + TX73_002105 0.81 +1.8 445,616 + TX73_002105 0.83 +1.7 445,616 + TX73_002105 0.83 +0.4 445,624 - TX73_002105 0.83 +0.6 445,642 + TX73_002105 0.85 +0.6 445,657 + TX73_002105 0.86 +1.3 445,683 + TX73_002105 0.87 -0.3 445,691 + TX73_002105 0.88 -1.8 445,745 + +1.2 445,834 + -1.4 445,834 + -1.9 445,834 + -1.0 445,847 + -1.4 445,851 + -1.1 445,851 + +0.5 445,851 + +1.3 445,851 + +1.7 445,851 + -0.4 445,853 + +0.6 445,856 + -2.3 445,859 - +0.7 445,859 - +1.6 445,859 - +1.1 445,884 + +1.2 445,962 - -0.9 445,978 - +0.2 446,048 + TX73_002110 0.13 +0.6 446,063 - TX73_002110 0.14 +2.1 446,098 + TX73_002110 0.16 -0.5 446,101 - TX73_002110 0.17 -1.7 446,119 - TX73_002110 0.18 +0.1 446,129 + TX73_002110 0.19 +0.6 446,160 - TX73_002110 0.21 -1.0 446,160 - TX73_002110 0.21 -1.9 446,170 - TX73_002110 0.21 +0.1 446,201 - TX73_002110 0.24 +2.4 446,302 - TX73_002110 0.31 -0.2 446,312 - TX73_002110 0.31 -0.4 446,312 - TX73_002110 0.31 -0.2 446,312 - TX73_002110 0.31 -0.8 446,358 - TX73_002110 0.34 +0.6 446,372 - TX73_002110 0.35 +0.5 446,404 + TX73_002110 0.38 -2.0 446,404 + TX73_002110 0.38 +0.6 446,409 + TX73_002110 0.38 +0.6 446,412 - TX73_002110 0.38 +0.3 446,412 - TX73_002110 0.38 -1.6 446,417 - TX73_002110 0.39 +1.2 446,417 - TX73_002110 0.39 -1.6 446,425 - TX73_002110 0.39 +1.6 446,432 + TX73_002110 0.40 +0.2 446,442 + TX73_002110 0.40 -0.0 446,514 - TX73_002110 0.45 -0.1 446,567 - TX73_002110 0.49 +1.0 446,598 + TX73_002110 0.51 -0.9 446,606 - TX73_002110 0.52 -1.6 446,631 + TX73_002110 0.53 -2.5 446,643 + TX73_002110 0.54 -1.2 446,655 + TX73_002110 0.55 -0.3 446,696 - TX73_002110 0.58 +0.5 446,753 + TX73_002110 0.62 +0.6 446,791 + TX73_002110 0.64 +1.3 446,791 + TX73_002110 0.64 +1.6 446,791 + TX73_002110 0.64 +0.6 446,799 - TX73_002110 0.65 -1.5 446,799 - TX73_002110 0.65 +0.3 446,799 - TX73_002110 0.65 +0.2 446,799 - TX73_002110 0.65 +0.3 446,799 - TX73_002110 0.65 +0.4
Or see this region's nucleotide sequence