Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011590

Experiment: acetate trihydrate and Sodium L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate trihydrate and Sodium L-Lactate (C)
2,540,367	-		TX73_011580	0.69	+2.1
2,540,376	-		TX73_011580	0.71	+0.2
2,540,398	-		TX73_011580	0.75	+0.8
2,540,417	+		TX73_011580	0.78	+1.4
2,540,439	-		TX73_011580	0.82	+1.2
2,540,447	+		TX73_011580	0.83	-0.7
2,540,455	-		TX73_011580	0.85	-1.2
2,540,455	-		TX73_011580	0.85	-1.1
2,540,473	+		TX73_011580	0.88	-0.7
2,540,555	+				+1.3
2,540,563	-				+0.9
2,540,563	-				-0.0
2,540,563	-				+0.3
2,540,563	-				-0.9
2,540,574	+				+0.9
2,540,582	-				+2.8
2,540,582	-				-0.3
2,540,596	+				+0.1
2,540,609	+				-1.7
2,540,616	-				+0.5
2,540,661	-				-1.8
2,540,722	-				-0.1
2,540,750	+				-0.3
2,540,773	-				+0.7
2,540,807	-				+0.8
2,540,809	+				-0.2
2,540,817	-				-0.0
2,540,867	+				+0.6
2,540,877	+				+0.6
2,540,884	+				+1.6
2,540,885	-				+0.8
2,540,885	-				-1.2
2,540,892	-				-0.9
2,540,909	+				-0.6
2,540,924	+		TX73_011585	0.15	+0.1
2,540,926	+		TX73_011585	0.15	+0.6
2,540,928	+		TX73_011585	0.16	+0.8
2,540,928	+		TX73_011585	0.16	-1.9
2,540,936	-		TX73_011585	0.19	+1.5
2,540,955	+		TX73_011585	0.26	+0.8
2,540,963	-		TX73_011585	0.30	+0.7
2,540,963	-		TX73_011585	0.30	+0.1
2,540,963	-		TX73_011585	0.30	+0.2
2,540,974	+		TX73_011585	0.34	-2.7
2,541,029	+		TX73_011585	0.55	-0.1
2,541,039	+		TX73_011585	0.59	-0.2
2,541,047	-		TX73_011585	0.62	+1.3
2,541,047	-		TX73_011585	0.62	+1.0
2,541,049	+		TX73_011585	0.62	+1.3
2,541,063	+		TX73_011585	0.68	-0.4
2,541,085	+		TX73_011585	0.76	+1.1
2,541,095	-		TX73_011585	0.80	-0.5
2,541,101	+		TX73_011585	0.82	+0.4
2,541,110	+		TX73_011585	0.86	-2.0
2,541,119	-		TX73_011585	0.89	+1.4
2,541,154	-				-0.1
2,541,161	+				-0.9
2,541,161	+				-0.9
2,541,161	+				+2.8
2,541,169	-				-0.2
2,541,169	-				-0.1
2,541,237	-				+0.2
2,541,239	+				+0.6
2,541,270	-				-1.6
2,541,280	-				-0.7
2,541,287	-				-0.5
2,541,314	-				-0.4
2,541,316	+				+0.2
2,541,321	+				-0.3
2,541,324	-				-0.1
2,541,326	+				-0.0
2,541,331	+				-0.4
2,541,334	-				+1.3
2,541,362	+				+0.4
2,541,362	+				+0.2
2,541,362	+				-0.3
2,541,370	-		TX73_011590	0.12	-0.7
2,541,370	-		TX73_011590	0.12	+0.2
2,541,409	+		TX73_011590	0.28	-0.6
2,541,442	+		TX73_011590	0.41	-0.1
2,541,449	-		TX73_011590	0.44	-1.0
2,541,460	-		TX73_011590	0.49	-1.0
2,541,507	+		TX73_011590	0.68	-2.7
2,541,507	+		TX73_011590	0.68	-0.8
2,541,532	+		TX73_011590	0.78	+1.3
2,541,537	+		TX73_011590	0.80	-1.8
2,541,537	-		TX73_011590	0.80	+0.1
2,541,580	-				-0.0
2,541,588	-				-0.8
2,541,588	-				-2.0
2,541,593	-				+0.5
2,541,618	+				+0.1
2,541,633	+				+0.6
2,541,639	+				+1.3
2,541,641	-				-0.2
2,541,641	-				+1.6
2,541,642	-				+0.6
2,541,643	+				+2.2
2,541,651	-				+2.0
2,541,651	-				+2.7
2,541,668	+				-1.5
2,541,669	-				-3.3
2,541,682	+				-1.9
2,541,685	-				+1.5
2,541,692	+		TX73_011595	0.12	-0.7
2,541,692	+		TX73_011595	0.12	+0.6
2,541,700	-		TX73_011595	0.14	+2.5
2,541,725	+		TX73_011595	0.22	+1.2
2,541,725	+		TX73_011595	0.22	-2.1
2,541,748	-		TX73_011595	0.29	+1.2
2,541,758	-		TX73_011595	0.32	-0.9
2,541,762	-		TX73_011595	0.33	-0.5
2,541,786	+		TX73_011595	0.41	+1.2
2,541,794	-		TX73_011595	0.43	+0.6
2,541,799	+		TX73_011595	0.45	-1.4
2,541,814	+		TX73_011595	0.49	+0.6
2,541,819	+		TX73_011595	0.51	+0.4
2,541,824	+		TX73_011595	0.52	-1.1
2,541,835	+		TX73_011595	0.56	-1.8
2,541,835	+		TX73_011595	0.56	-1.7
2,541,843	-		TX73_011595	0.58	+0.2
2,541,898	+		TX73_011595	0.75	-0.4
2,541,898	+		TX73_011595	0.75	-1.3
2,541,898	+		TX73_011595	0.75	-0.2
2,541,898	+		TX73_011595	0.75	-0.1
2,541,898	+		TX73_011595	0.75	-0.9
2,541,898	+		TX73_011595	0.75	-1.3
2,541,903	+		TX73_011595	0.77	+0.2
2,541,906	-		TX73_011595	0.78	+1.2
2,541,906	-		TX73_011595	0.78	-0.9
2,541,906	-		TX73_011595	0.78	-0.4
2,541,906	-		TX73_011595	0.78	+2.3
2,541,906	-		TX73_011595	0.78	-1.7
2,541,906	-		TX73_011595	0.78	+1.0
2,541,906	-		TX73_011595	0.78	-1.9
2,541,906	-		TX73_011595	0.78	-0.5
2,541,906	-		TX73_011595	0.78	-0.5
2,541,906	-		TX73_011595	0.78	-0.2
2,541,906	-		TX73_011595	0.78	-0.9
2,541,906	-		TX73_011595	0.78	+1.5
2,541,920	+		TX73_011595	0.82	+0.8
2,541,953	+				-0.6
2,541,968	-				+1.5
2,541,977	+				+0.3
2,541,984	-				+0.7
2,542,000	+				-1.1
2,542,000	+				-0.8
2,542,031	+				+2.0
2,542,049	-				+2.7
2,542,056	+				-0.4
2,542,064	+				-0.1
2,542,064	+				+0.9
2,542,064	+				+0.1
2,542,066	+				-0.9
2,542,066	+				+1.3
2,542,066	+				+2.7
2,542,066	+				-0.4
2,542,074	-				+0.1
2,542,074	-				+0.2
2,542,074	-				-1.0
2,542,074	-				+0.4
2,542,082	-				+0.1
2,542,128	+				+1.5
2,542,134	-				+0.8
2,542,160	-				+1.4
2,542,181	+				-1.3
2,542,187	+				-0.3
2,542,189	-				-2.0
2,542,221	+				-0.8
2,542,223	+				-1.1
2,542,231	-				+0.2
2,542,231	-				-2.3
2,542,253	+				+1.1
2,542,273	+				-3.5
2,542,278	+				+1.3
2,542,281	-				+0.9
2,542,286	-				+0.3
2,542,286	-				+0.8
2,542,310	+				-0.1
2,542,318	-				-0.2
2,542,318	-				+0.3
2,542,320	+				+0.6
2,542,329	+				+0.8
2,542,335	-				+0.1
2,542,352	-				-1.2
2,542,352	-				+1.8
2,542,379	-				+0.0
2,542,420	-				+1.6
2,542,423	-				-1.0
2,542,425	+				-0.3
2,542,493	-				-0.9
2,542,495	+				-3.1
2,542,498	-				-0.7
2,542,503	-				-0.1
2,542,510	+				+0.2
2,542,510	+				-0.4
2,542,513	-				-0.7
2,542,518	-				-0.4
2,542,518	-				+0.3
2,542,518	-				-0.2
2,542,518	-				-0.1
2,542,518	-				+1.2
2,542,546	+				+1.0
2,542,549	-				-1.8
2,542,564	-				+0.6
2,542,574	+				-0.3
2,542,583	-				-1.0