Experiment: acetate trihydrate and Sodium L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000840 and TX73_000845 are separated by 151 nucleotides TX73_000845 and TX73_000850 are separated by 138 nucleotides
TX73_000840: TX73_000840 - DMT family transporter, at 179,631 to 180,536
_000840
TX73_000845: TX73_000845 - GTPase ObgE, at 180,688 to 181,749
_000845
TX73_000850: TX73_000850 - glutamate 5-kinase, at 181,888 to 183,018
_000850
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 179.727 kb on + strand, within TX73_000840 at 179.735 kb on - strand, within TX73_000840 at 179.745 kb on - strand, within TX73_000840 at 179.754 kb on + strand, within TX73_000840 at 179.779 kb on + strand, within TX73_000840 at 179.844 kb on - strand, within TX73_000840 at 179.849 kb on - strand, within TX73_000840 at 179.849 kb on - strand, within TX73_000840 at 179.849 kb on - strand, within TX73_000840 at 179.871 kb on - strand, within TX73_000840 at 179.871 kb on - strand, within TX73_000840 at 179.886 kb on - strand, within TX73_000840 at 179.903 kb on + strand, within TX73_000840 at 179.927 kb on + strand, within TX73_000840 at 179.927 kb on + strand, within TX73_000840 at 179.935 kb on - strand, within TX73_000840 at 179.935 kb on - strand, within TX73_000840 at 179.940 kb on - strand, within TX73_000840 at 179.945 kb on - strand, within TX73_000840 at 179.960 kb on + strand, within TX73_000840 at 179.967 kb on + strand, within TX73_000840 at 179.968 kb on - strand, within TX73_000840 at 179.974 kb on + strand, within TX73_000840 at 179.975 kb on - strand, within TX73_000840 at 179.975 kb on - strand, within TX73_000840 at 179.975 kb on - strand, within TX73_000840 at 179.986 kb on - strand, within TX73_000840 at 180.015 kb on - strand, within TX73_000840 at 180.019 kb on + strand, within TX73_000840 at 180.020 kb on - strand, within TX73_000840 at 180.025 kb on - strand, within TX73_000840 at 180.044 kb on - strand, within TX73_000840 at 180.061 kb on - strand, within TX73_000840 at 180.071 kb on - strand, within TX73_000840 at 180.071 kb on - strand, within TX73_000840 at 180.077 kb on - strand, within TX73_000840 at 180.084 kb on - strand, within TX73_000840 at 180.119 kb on - strand, within TX73_000840 at 180.149 kb on - strand, within TX73_000840 at 180.162 kb on - strand, within TX73_000840 at 180.198 kb on + strand, within TX73_000840 at 180.207 kb on - strand, within TX73_000840 at 180.243 kb on - strand, within TX73_000840 at 180.244 kb on + strand, within TX73_000840 at 180.244 kb on + strand, within TX73_000840 at 180.246 kb on + strand, within TX73_000840 at 180.252 kb on - strand, within TX73_000840 at 180.290 kb on + strand, within TX73_000840 at 180.296 kb on + strand, within TX73_000840 at 180.304 kb on + strand, within TX73_000840 at 180.304 kb on + strand, within TX73_000840 at 180.334 kb on + strand, within TX73_000840 at 180.339 kb on + strand, within TX73_000840 at 180.339 kb on + strand, within TX73_000840 at 180.342 kb on - strand, within TX73_000840 at 180.386 kb on + strand, within TX73_000840 at 180.418 kb on + strand, within TX73_000840 at 180.468 kb on + strand at 180.476 kb on - strand at 180.483 kb on + strand at 180.491 kb on - strand at 180.500 kb on + strand at 180.500 kb on + strand at 180.500 kb on + strand at 180.508 kb on - strand at 180.508 kb on - strand at 180.508 kb on - strand at 180.508 kb on - strand at 180.508 kb on - strand at 180.519 kb on - strand at 180.530 kb on + strand at 180.530 kb on + strand at 180.535 kb on + strand at 180.538 kb on - strand at 180.538 kb on - strand at 180.543 kb on - strand at 180.577 kb on + strand at 180.587 kb on + strand at 180.594 kb on - strand at 180.597 kb on + strand at 180.597 kb on + strand at 180.600 kb on - strand at 180.620 kb on + strand at 180.622 kb on + strand at 180.623 kb on - strand at 180.623 kb on - strand at 180.657 kb on - strand at 180.657 kb on - strand at 180.668 kb on - strand at 180.669 kb on - strand at 181.662 kb on + strand at 181.686 kb on - strand at 181.720 kb on + strand at 181.722 kb on - strand at 181.722 kb on - strand at 181.725 kb on + strand at 181.725 kb on + strand at 181.725 kb on + strand at 181.725 kb on + strand at 181.725 kb on + strand at 181.725 kb on + strand at 181.725 kb on + strand at 181.725 kb on + strand at 181.733 kb on - strand at 181.733 kb on - strand at 181.743 kb on + strand at 181.753 kb on + strand at 181.767 kb on + strand at 181.767 kb on + strand at 181.767 kb on + strand at 181.775 kb on - strand at 181.813 kb on + strand at 181.818 kb on + strand at 181.821 kb on - strand at 181.821 kb on - strand at 181.826 kb on - strand at 181.831 kb on + strand at 181.839 kb on - strand at 181.844 kb on - strand at 181.853 kb on + strand at 181.864 kb on - strand at 181.885 kb on + strand at 181.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate trihydrate and Sodium L-Lactate (C) remove 179,727 + TX73_000840 0.11 +1.9 179,735 - TX73_000840 0.11 -1.8 179,745 - TX73_000840 0.13 -0.3 179,754 + TX73_000840 0.14 -0.4 179,779 + TX73_000840 0.16 -2.0 179,844 - TX73_000840 0.24 -0.7 179,849 - TX73_000840 0.24 -1.8 179,849 - TX73_000840 0.24 +0.8 179,849 - TX73_000840 0.24 -1.3 179,871 - TX73_000840 0.26 -0.1 179,871 - TX73_000840 0.26 +2.1 179,886 - TX73_000840 0.28 +0.4 179,903 + TX73_000840 0.30 +1.3 179,927 + TX73_000840 0.33 +1.0 179,927 + TX73_000840 0.33 -0.5 179,935 - TX73_000840 0.34 -0.9 179,935 - TX73_000840 0.34 +1.6 179,940 - TX73_000840 0.34 -2.2 179,945 - TX73_000840 0.35 -2.5 179,960 + TX73_000840 0.36 -1.0 179,967 + TX73_000840 0.37 -0.1 179,968 - TX73_000840 0.37 +1.0 179,974 + TX73_000840 0.38 -0.7 179,975 - TX73_000840 0.38 -0.8 179,975 - TX73_000840 0.38 +1.0 179,975 - TX73_000840 0.38 +1.4 179,986 - TX73_000840 0.39 -0.0 180,015 - TX73_000840 0.42 -1.3 180,019 + TX73_000840 0.43 -1.3 180,020 - TX73_000840 0.43 +3.7 180,025 - TX73_000840 0.43 +0.7 180,044 - TX73_000840 0.46 -1.6 180,061 - TX73_000840 0.47 +0.3 180,071 - TX73_000840 0.49 -1.3 180,071 - TX73_000840 0.49 -0.8 180,077 - TX73_000840 0.49 -1.3 180,084 - TX73_000840 0.50 -2.0 180,119 - TX73_000840 0.54 +2.0 180,149 - TX73_000840 0.57 +2.9 180,162 - TX73_000840 0.59 +0.6 180,198 + TX73_000840 0.63 -0.4 180,207 - TX73_000840 0.64 -0.7 180,243 - TX73_000840 0.68 -0.9 180,244 + TX73_000840 0.68 +0.1 180,244 + TX73_000840 0.68 +0.7 180,246 + TX73_000840 0.68 -0.9 180,252 - TX73_000840 0.69 -0.2 180,290 + TX73_000840 0.73 -1.7 180,296 + TX73_000840 0.73 +6.6 180,304 + TX73_000840 0.74 +0.3 180,304 + TX73_000840 0.74 -1.0 180,334 + TX73_000840 0.78 +0.2 180,339 + TX73_000840 0.78 +1.1 180,339 + TX73_000840 0.78 -0.3 180,342 - TX73_000840 0.78 -0.6 180,386 + TX73_000840 0.83 +1.2 180,418 + TX73_000840 0.87 -0.8 180,468 + +1.2 180,476 - +0.2 180,483 + +0.3 180,491 - +1.1 180,500 + -1.4 180,500 + +0.5 180,500 + +0.1 180,508 - +2.7 180,508 - +0.4 180,508 - -0.0 180,508 - -0.8 180,508 - +1.8 180,519 - +1.3 180,530 + -0.8 180,530 + -0.2 180,535 + +1.5 180,538 - +1.2 180,538 - -1.0 180,543 - +1.2 180,577 + +0.6 180,587 + +0.3 180,594 - +1.0 180,597 + -1.4 180,597 + +0.1 180,600 - -0.3 180,620 + -0.1 180,622 + +0.3 180,623 - +0.5 180,623 - +0.1 180,657 - -0.2 180,657 - -0.2 180,668 - -0.5 180,669 - +0.5 181,662 + -0.2 181,686 - +0.2 181,720 + +1.1 181,722 - -0.4 181,722 - -0.1 181,725 + +0.8 181,725 + -0.3 181,725 + -0.3 181,725 + -2.2 181,725 + -1.4 181,725 + -2.8 181,725 + +0.3 181,725 + -0.2 181,733 - +1.2 181,733 - +1.4 181,743 + +0.7 181,753 + +0.7 181,767 + -0.5 181,767 + +0.3 181,767 + -2.3 181,775 - -1.2 181,813 + -0.0 181,818 + -1.2 181,821 - +0.0 181,821 - +0.1 181,826 - -1.4 181,831 + +0.1 181,839 - -1.1 181,844 - -2.6 181,853 + -1.3 181,864 - +0.8 181,885 + +1.3 181,893 - -1.6
Or see this region's nucleotide sequence