Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04439 and MPMX20_04440 are separated by 170 nucleotides MPMX20_04440 and MPMX20_04441 overlap by 4 nucleotides MPMX20_04441 and MPMX20_04442 are separated by 41 nucleotides
MPMX20_04439: MPMX20_04439 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,642,257 to 4,643,762
_04439
MPMX20_04440: MPMX20_04440 - Transcription antitermination protein RfaH, at 4,643,933 to 4,644,424
_04440
MPMX20_04441: MPMX20_04441 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,644,421 to 4,645,203
_04441
MPMX20_04442: MPMX20_04442 - Sec-independent protein translocase protein TatC, at 4,645,245 to 4,646,015
_04442
Position (kb) 4643
4644
4645 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4643.781 kb on + strand at 4643.791 kb on + strand at 4643.791 kb on + strand at 4643.799 kb on - strand at 4643.801 kb on + strand at 4643.809 kb on - strand at 4643.809 kb on - strand at 4643.855 kb on - strand at 4643.947 kb on - strand at 4643.971 kb on + strand at 4643.975 kb on - strand at 4644.026 kb on - strand, within MPMX20_04440 at 4644.153 kb on + strand, within MPMX20_04440 at 4644.291 kb on + strand, within MPMX20_04440 at 4644.359 kb on - strand, within MPMX20_04440 at 4644.383 kb on + strand at 4644.383 kb on + strand at 4644.402 kb on + strand at 4644.419 kb on + strand at 4644.419 kb on + strand at 4644.489 kb on + strand at 4644.522 kb on + strand, within MPMX20_04441 at 4644.637 kb on - strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.693 kb on + strand, within MPMX20_04441 at 4644.701 kb on - strand, within MPMX20_04441 at 4644.715 kb on + strand, within MPMX20_04441 at 4644.738 kb on + strand, within MPMX20_04441 at 4644.753 kb on + strand, within MPMX20_04441 at 4644.813 kb on + strand, within MPMX20_04441 at 4644.832 kb on - strand, within MPMX20_04441 at 4644.986 kb on - strand, within MPMX20_04441 at 4645.046 kb on + strand, within MPMX20_04441 at 4645.120 kb on - strand, within MPMX20_04441 at 4645.146 kb on - strand at 4645.182 kb on + strand at 4645.182 kb on + strand at 4645.185 kb on - strand at 4645.190 kb on - strand at 4645.223 kb on - strand at 4645.242 kb on + strand at 4645.341 kb on - strand, within MPMX20_04442 at 4645.343 kb on + strand, within MPMX20_04442
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 4,643,781 + +0.2 4,643,791 + -0.1 4,643,791 + -1.3 4,643,799 - -0.5 4,643,801 + +0.6 4,643,809 - -0.4 4,643,809 - -0.7 4,643,855 - +1.3 4,643,947 - -2.4 4,643,971 + -1.1 4,643,975 - -1.9 4,644,026 - MPMX20_04440 0.19 -3.7 4,644,153 + MPMX20_04440 0.45 -2.6 4,644,291 + MPMX20_04440 0.73 -1.1 4,644,359 - MPMX20_04440 0.87 -2.3 4,644,383 + -0.6 4,644,383 + +1.3 4,644,402 + -1.7 4,644,419 + -1.1 4,644,419 + +0.8 4,644,489 + -0.8 4,644,522 + MPMX20_04441 0.13 -1.1 4,644,637 - MPMX20_04441 0.28 +1.1 4,644,648 + MPMX20_04441 0.29 +0.4 4,644,648 + MPMX20_04441 0.29 +1.7 4,644,648 + MPMX20_04441 0.29 +0.6 4,644,656 - MPMX20_04441 0.30 -0.0 4,644,656 - MPMX20_04441 0.30 -0.5 4,644,656 - MPMX20_04441 0.30 -0.1 4,644,693 + MPMX20_04441 0.35 -0.8 4,644,701 - MPMX20_04441 0.36 -0.4 4,644,715 + MPMX20_04441 0.38 +0.2 4,644,738 + MPMX20_04441 0.40 +0.1 4,644,753 + MPMX20_04441 0.42 -1.1 4,644,813 + MPMX20_04441 0.50 -0.5 4,644,832 - MPMX20_04441 0.52 +0.3 4,644,986 - MPMX20_04441 0.72 +0.9 4,645,046 + MPMX20_04441 0.80 +0.1 4,645,120 - MPMX20_04441 0.89 +0.4 4,645,146 - -0.6 4,645,182 + +0.0 4,645,182 + -0.2 4,645,185 - +0.4 4,645,190 - -1.5 4,645,223 - -0.5 4,645,242 + -0.2 4,645,341 - MPMX20_04442 0.12 -4.6 4,645,343 + MPMX20_04442 0.13 -4.7
Or see this region's nucleotide sequence