Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04278 and MPMX20_04279 are separated by 57 nucleotides MPMX20_04279 and MPMX20_04280 are separated by 286 nucleotides
MPMX20_04278: MPMX20_04278 - 3-dehydroquinate synthase, at 4,460,688 to 4,461,776
_04278
MPMX20_04279: MPMX20_04279 - Shikimate kinase 1, at 4,461,834 to 4,462,355
_04279
MPMX20_04280: MPMX20_04280 - Type IV pilus biogenesis and competence protein PilQ, at 4,462,642 to 4,463,880
_04280
Position (kb)
4461
4462
4463 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4460.881 kb on + strand, within MPMX20_04278 at 4460.889 kb on - strand, within MPMX20_04278 at 4460.889 kb on - strand, within MPMX20_04278 at 4460.889 kb on - strand, within MPMX20_04278 at 4460.899 kb on - strand, within MPMX20_04278 at 4460.944 kb on - strand, within MPMX20_04278 at 4461.038 kb on + strand, within MPMX20_04278 at 4461.153 kb on + strand, within MPMX20_04278 at 4461.171 kb on - strand, within MPMX20_04278 at 4461.281 kb on - strand, within MPMX20_04278 at 4461.281 kb on - strand, within MPMX20_04278 at 4461.482 kb on + strand, within MPMX20_04278 at 4461.482 kb on + strand, within MPMX20_04278 at 4461.490 kb on - strand, within MPMX20_04278 at 4461.529 kb on + strand, within MPMX20_04278 at 4461.546 kb on + strand, within MPMX20_04278 at 4461.547 kb on + strand, within MPMX20_04278 at 4461.547 kb on + strand, within MPMX20_04278 at 4461.582 kb on + strand, within MPMX20_04278 at 4461.636 kb on - strand, within MPMX20_04278 at 4461.693 kb on + strand at 4461.761 kb on + strand at 4461.768 kb on - strand at 4461.769 kb on - strand at 4461.769 kb on - strand at 4461.843 kb on - strand at 4461.857 kb on - strand at 4461.883 kb on - strand at 4461.945 kb on + strand, within MPMX20_04279 at 4462.011 kb on - strand, within MPMX20_04279 at 4462.051 kb on - strand, within MPMX20_04279 at 4462.055 kb on + strand, within MPMX20_04279 at 4462.114 kb on + strand, within MPMX20_04279 at 4462.215 kb on + strand, within MPMX20_04279 at 4462.217 kb on + strand, within MPMX20_04279 at 4462.217 kb on + strand, within MPMX20_04279 at 4462.323 kb on - strand at 4462.323 kb on - strand at 4462.324 kb on - strand at 4462.363 kb on + strand at 4462.375 kb on - strand at 4462.375 kb on - strand at 4462.445 kb on - strand at 4462.537 kb on + strand at 4462.538 kb on + strand at 4462.545 kb on - strand at 4462.547 kb on - strand at 4462.588 kb on + strand at 4462.630 kb on + strand at 4462.649 kb on + strand at 4462.659 kb on + strand at 4462.685 kb on - strand at 4462.702 kb on - strand at 4462.715 kb on + strand at 4462.733 kb on - strand at 4462.757 kb on - strand at 4462.803 kb on + strand, within MPMX20_04280 at 4462.803 kb on + strand, within MPMX20_04280 at 4462.803 kb on + strand, within MPMX20_04280 at 4462.882 kb on - strand, within MPMX20_04280 at 4462.888 kb on - strand, within MPMX20_04280 at 4462.945 kb on + strand, within MPMX20_04280 at 4462.945 kb on + strand, within MPMX20_04280 at 4462.972 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.052 kb on + strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.060 kb on - strand, within MPMX20_04280 at 4463.185 kb on - strand, within MPMX20_04280 at 4463.251 kb on - strand, within MPMX20_04280 at 4463.333 kb on + strand, within MPMX20_04280
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 4,460,881 + MPMX20_04278 0.18 -0.9 4,460,889 - MPMX20_04278 0.18 +0.1 4,460,889 - MPMX20_04278 0.18 -1.5 4,460,889 - MPMX20_04278 0.18 -0.1 4,460,899 - MPMX20_04278 0.19 +0.5 4,460,944 - MPMX20_04278 0.24 -0.5 4,461,038 + MPMX20_04278 0.32 -1.1 4,461,153 + MPMX20_04278 0.43 -2.7 4,461,171 - MPMX20_04278 0.44 -2.3 4,461,281 - MPMX20_04278 0.54 -0.5 4,461,281 - MPMX20_04278 0.54 -0.2 4,461,482 + MPMX20_04278 0.73 +1.4 4,461,482 + MPMX20_04278 0.73 -2.3 4,461,490 - MPMX20_04278 0.74 -0.7 4,461,529 + MPMX20_04278 0.77 -2.5 4,461,546 + MPMX20_04278 0.79 -1.5 4,461,547 + MPMX20_04278 0.79 +0.9 4,461,547 + MPMX20_04278 0.79 +3.2 4,461,582 + MPMX20_04278 0.82 -2.6 4,461,636 - MPMX20_04278 0.87 -0.8 4,461,693 + -1.0 4,461,761 + -2.3 4,461,768 - -1.6 4,461,769 - +0.4 4,461,769 - -0.4 4,461,843 - -1.2 4,461,857 - +1.3 4,461,883 - -0.1 4,461,945 + MPMX20_04279 0.21 -1.7 4,462,011 - MPMX20_04279 0.34 -2.0 4,462,051 - MPMX20_04279 0.42 -0.6 4,462,055 + MPMX20_04279 0.42 -2.4 4,462,114 + MPMX20_04279 0.54 -2.8 4,462,215 + MPMX20_04279 0.73 -2.1 4,462,217 + MPMX20_04279 0.73 -0.8 4,462,217 + MPMX20_04279 0.73 +1.3 4,462,323 - -2.8 4,462,323 - -0.7 4,462,324 - -1.1 4,462,363 + -0.1 4,462,375 - -1.5 4,462,375 - +0.2 4,462,445 - -0.5 4,462,537 + +0.3 4,462,538 + +0.8 4,462,545 - +0.5 4,462,547 - +0.1 4,462,588 + +0.3 4,462,630 + +1.8 4,462,649 + -0.9 4,462,659 + +0.2 4,462,685 - -0.6 4,462,702 - -0.7 4,462,715 + +0.0 4,462,733 - +1.1 4,462,757 - +0.1 4,462,803 + MPMX20_04280 0.13 -0.1 4,462,803 + MPMX20_04280 0.13 +0.2 4,462,803 + MPMX20_04280 0.13 -0.3 4,462,882 - MPMX20_04280 0.19 +2.4 4,462,888 - MPMX20_04280 0.20 +0.3 4,462,945 + MPMX20_04280 0.24 +0.1 4,462,945 + MPMX20_04280 0.24 +0.2 4,462,972 + MPMX20_04280 0.27 -0.3 4,463,052 + MPMX20_04280 0.33 -0.3 4,463,052 + MPMX20_04280 0.33 +0.3 4,463,052 + MPMX20_04280 0.33 +0.3 4,463,052 + MPMX20_04280 0.33 +0.2 4,463,052 + MPMX20_04280 0.33 -2.5 4,463,052 + MPMX20_04280 0.33 -0.0 4,463,052 + MPMX20_04280 0.33 -0.1 4,463,052 + MPMX20_04280 0.33 +0.5 4,463,052 + MPMX20_04280 0.33 +0.4 4,463,052 + MPMX20_04280 0.33 +0.3 4,463,052 + MPMX20_04280 0.33 +0.3 4,463,052 + MPMX20_04280 0.33 +0.1 4,463,052 + MPMX20_04280 0.33 -1.4 4,463,052 + MPMX20_04280 0.33 -0.1 4,463,052 + MPMX20_04280 0.33 -0.9 4,463,052 + MPMX20_04280 0.33 -0.4 4,463,052 + MPMX20_04280 0.33 -0.2 4,463,052 + MPMX20_04280 0.33 -0.1 4,463,052 + MPMX20_04280 0.33 +1.3 4,463,060 - MPMX20_04280 0.34 +0.3 4,463,060 - MPMX20_04280 0.34 +0.7 4,463,060 - MPMX20_04280 0.34 -0.4 4,463,060 - MPMX20_04280 0.34 +1.7 4,463,060 - MPMX20_04280 0.34 +1.0 4,463,060 - MPMX20_04280 0.34 -0.1 4,463,060 - MPMX20_04280 0.34 -0.0 4,463,060 - MPMX20_04280 0.34 +0.0 4,463,060 - MPMX20_04280 0.34 -0.0 4,463,060 - MPMX20_04280 0.34 +0.9 4,463,060 - MPMX20_04280 0.34 +0.1 4,463,060 - MPMX20_04280 0.34 +0.4 4,463,060 - MPMX20_04280 0.34 +0.3 4,463,060 - MPMX20_04280 0.34 -0.4 4,463,060 - MPMX20_04280 0.34 +0.7 4,463,060 - MPMX20_04280 0.34 -0.3 4,463,060 - MPMX20_04280 0.34 +1.0 4,463,060 - MPMX20_04280 0.34 -0.7 4,463,185 - MPMX20_04280 0.44 +0.4 4,463,251 - MPMX20_04280 0.49 +1.0 4,463,333 + MPMX20_04280 0.56 +0.5
Or see this region's nucleotide sequence