Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04279

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04278 and MPMX20_04279 are separated by 57 nucleotidesMPMX20_04279 and MPMX20_04280 are separated by 286 nucleotides MPMX20_04278: MPMX20_04278 - 3-dehydroquinate synthase, at 4,460,688 to 4,461,776 _04278 MPMX20_04279: MPMX20_04279 - Shikimate kinase 1, at 4,461,834 to 4,462,355 _04279 MPMX20_04280: MPMX20_04280 - Type IV pilus biogenesis and competence protein PilQ, at 4,462,642 to 4,463,880 _04280 Position (kb) 4461 4462 4463Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4460.881 kb on + strand, within MPMX20_04278at 4460.889 kb on - strand, within MPMX20_04278at 4460.889 kb on - strand, within MPMX20_04278at 4460.889 kb on - strand, within MPMX20_04278at 4460.899 kb on - strand, within MPMX20_04278at 4460.944 kb on - strand, within MPMX20_04278at 4461.038 kb on + strand, within MPMX20_04278at 4461.153 kb on + strand, within MPMX20_04278at 4461.171 kb on - strand, within MPMX20_04278at 4461.281 kb on - strand, within MPMX20_04278at 4461.281 kb on - strand, within MPMX20_04278at 4461.482 kb on + strand, within MPMX20_04278at 4461.482 kb on + strand, within MPMX20_04278at 4461.490 kb on - strand, within MPMX20_04278at 4461.529 kb on + strand, within MPMX20_04278at 4461.546 kb on + strand, within MPMX20_04278at 4461.547 kb on + strand, within MPMX20_04278at 4461.547 kb on + strand, within MPMX20_04278at 4461.582 kb on + strand, within MPMX20_04278at 4461.636 kb on - strand, within MPMX20_04278at 4461.693 kb on + strandat 4461.761 kb on + strandat 4461.768 kb on - strandat 4461.769 kb on - strandat 4461.769 kb on - strandat 4461.843 kb on - strandat 4461.857 kb on - strandat 4461.883 kb on - strandat 4461.945 kb on + strand, within MPMX20_04279at 4462.011 kb on - strand, within MPMX20_04279at 4462.051 kb on - strand, within MPMX20_04279at 4462.055 kb on + strand, within MPMX20_04279at 4462.114 kb on + strand, within MPMX20_04279at 4462.215 kb on + strand, within MPMX20_04279at 4462.217 kb on + strand, within MPMX20_04279at 4462.217 kb on + strand, within MPMX20_04279at 4462.323 kb on - strandat 4462.323 kb on - strandat 4462.324 kb on - strandat 4462.363 kb on + strandat 4462.375 kb on - strandat 4462.375 kb on - strandat 4462.445 kb on - strandat 4462.537 kb on + strandat 4462.538 kb on + strandat 4462.545 kb on - strandat 4462.547 kb on - strandat 4462.588 kb on + strandat 4462.630 kb on + strandat 4462.649 kb on + strandat 4462.659 kb on + strandat 4462.685 kb on - strandat 4462.702 kb on - strandat 4462.715 kb on + strandat 4462.733 kb on - strandat 4462.757 kb on - strandat 4462.803 kb on + strand, within MPMX20_04280at 4462.803 kb on + strand, within MPMX20_04280at 4462.803 kb on + strand, within MPMX20_04280at 4462.882 kb on - strand, within MPMX20_04280at 4462.888 kb on - strand, within MPMX20_04280at 4462.945 kb on + strand, within MPMX20_04280at 4462.945 kb on + strand, within MPMX20_04280at 4462.972 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.052 kb on + strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.060 kb on - strand, within MPMX20_04280at 4463.185 kb on - strand, within MPMX20_04280at 4463.251 kb on - strand, within MPMX20_04280at 4463.333 kb on + strand, within MPMX20_04280

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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4,460,881 + MPMX20_04278 0.18 -0.9
4,460,889 - MPMX20_04278 0.18 +0.1
4,460,889 - MPMX20_04278 0.18 -1.5
4,460,889 - MPMX20_04278 0.18 -0.1
4,460,899 - MPMX20_04278 0.19 +0.5
4,460,944 - MPMX20_04278 0.24 -0.5
4,461,038 + MPMX20_04278 0.32 -1.1
4,461,153 + MPMX20_04278 0.43 -2.7
4,461,171 - MPMX20_04278 0.44 -2.3
4,461,281 - MPMX20_04278 0.54 -0.5
4,461,281 - MPMX20_04278 0.54 -0.2
4,461,482 + MPMX20_04278 0.73 +1.4
4,461,482 + MPMX20_04278 0.73 -2.3
4,461,490 - MPMX20_04278 0.74 -0.7
4,461,529 + MPMX20_04278 0.77 -2.5
4,461,546 + MPMX20_04278 0.79 -1.5
4,461,547 + MPMX20_04278 0.79 +0.9
4,461,547 + MPMX20_04278 0.79 +3.2
4,461,582 + MPMX20_04278 0.82 -2.6
4,461,636 - MPMX20_04278 0.87 -0.8
4,461,693 + -1.0
4,461,761 + -2.3
4,461,768 - -1.6
4,461,769 - +0.4
4,461,769 - -0.4
4,461,843 - -1.2
4,461,857 - +1.3
4,461,883 - -0.1
4,461,945 + MPMX20_04279 0.21 -1.7
4,462,011 - MPMX20_04279 0.34 -2.0
4,462,051 - MPMX20_04279 0.42 -0.6
4,462,055 + MPMX20_04279 0.42 -2.4
4,462,114 + MPMX20_04279 0.54 -2.8
4,462,215 + MPMX20_04279 0.73 -2.1
4,462,217 + MPMX20_04279 0.73 -0.8
4,462,217 + MPMX20_04279 0.73 +1.3
4,462,323 - -2.8
4,462,323 - -0.7
4,462,324 - -1.1
4,462,363 + -0.1
4,462,375 - -1.5
4,462,375 - +0.2
4,462,445 - -0.5
4,462,537 + +0.3
4,462,538 + +0.8
4,462,545 - +0.5
4,462,547 - +0.1
4,462,588 + +0.3
4,462,630 + +1.8
4,462,649 + -0.9
4,462,659 + +0.2
4,462,685 - -0.6
4,462,702 - -0.7
4,462,715 + +0.0
4,462,733 - +1.1
4,462,757 - +0.1
4,462,803 + MPMX20_04280 0.13 -0.1
4,462,803 + MPMX20_04280 0.13 +0.2
4,462,803 + MPMX20_04280 0.13 -0.3
4,462,882 - MPMX20_04280 0.19 +2.4
4,462,888 - MPMX20_04280 0.20 +0.3
4,462,945 + MPMX20_04280 0.24 +0.1
4,462,945 + MPMX20_04280 0.24 +0.2
4,462,972 + MPMX20_04280 0.27 -0.3
4,463,052 + MPMX20_04280 0.33 -0.3
4,463,052 + MPMX20_04280 0.33 +0.3
4,463,052 + MPMX20_04280 0.33 +0.3
4,463,052 + MPMX20_04280 0.33 +0.2
4,463,052 + MPMX20_04280 0.33 -2.5
4,463,052 + MPMX20_04280 0.33 -0.0
4,463,052 + MPMX20_04280 0.33 -0.1
4,463,052 + MPMX20_04280 0.33 +0.5
4,463,052 + MPMX20_04280 0.33 +0.4
4,463,052 + MPMX20_04280 0.33 +0.3
4,463,052 + MPMX20_04280 0.33 +0.3
4,463,052 + MPMX20_04280 0.33 +0.1
4,463,052 + MPMX20_04280 0.33 -1.4
4,463,052 + MPMX20_04280 0.33 -0.1
4,463,052 + MPMX20_04280 0.33 -0.9
4,463,052 + MPMX20_04280 0.33 -0.4
4,463,052 + MPMX20_04280 0.33 -0.2
4,463,052 + MPMX20_04280 0.33 -0.1
4,463,052 + MPMX20_04280 0.33 +1.3
4,463,060 - MPMX20_04280 0.34 +0.3
4,463,060 - MPMX20_04280 0.34 +0.7
4,463,060 - MPMX20_04280 0.34 -0.4
4,463,060 - MPMX20_04280 0.34 +1.7
4,463,060 - MPMX20_04280 0.34 +1.0
4,463,060 - MPMX20_04280 0.34 -0.1
4,463,060 - MPMX20_04280 0.34 -0.0
4,463,060 - MPMX20_04280 0.34 +0.0
4,463,060 - MPMX20_04280 0.34 -0.0
4,463,060 - MPMX20_04280 0.34 +0.9
4,463,060 - MPMX20_04280 0.34 +0.1
4,463,060 - MPMX20_04280 0.34 +0.4
4,463,060 - MPMX20_04280 0.34 +0.3
4,463,060 - MPMX20_04280 0.34 -0.4
4,463,060 - MPMX20_04280 0.34 +0.7
4,463,060 - MPMX20_04280 0.34 -0.3
4,463,060 - MPMX20_04280 0.34 +1.0
4,463,060 - MPMX20_04280 0.34 -0.7
4,463,185 - MPMX20_04280 0.44 +0.4
4,463,251 - MPMX20_04280 0.49 +1.0
4,463,333 + MPMX20_04280 0.56 +0.5

Or see this region's nucleotide sequence