Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04189

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04187 and MPMX20_04188 overlap by 25 nucleotidesMPMX20_04188 and MPMX20_04189 overlap by 4 nucleotidesMPMX20_04189 and MPMX20_04190 are separated by 4 nucleotidesMPMX20_04190 and MPMX20_04191 overlap by 11 nucleotides MPMX20_04187: MPMX20_04187 - Protein YrdA, at 4,391,952 to 4,392,506 _04187 MPMX20_04188: MPMX20_04188 - hypothetical protein, at 4,392,482 to 4,392,730 _04188 MPMX20_04189: MPMX20_04189 - Shikimate dehydrogenase (NADP(+)), at 4,392,727 to 4,393,545 _04189 MPMX20_04190: MPMX20_04190 - Threonylcarbamoyl-AMP synthase, at 4,393,550 to 4,394,122 _04190 MPMX20_04191: MPMX20_04191 - DNA topoisomerase 1, at 4,394,112 to 4,394,669 _04191 Position (kb) 4392 4393 4394Strain fitness (log2 ratio) -2 -1 0 1 2at 4391.736 kb on - strandat 4391.736 kb on - strandat 4391.736 kb on - strandat 4391.736 kb on - strandat 4391.736 kb on - strandat 4391.736 kb on - strandat 4391.749 kb on + strandat 4391.772 kb on + strandat 4391.772 kb on + strandat 4391.883 kb on + strandat 4391.902 kb on - strandat 4391.903 kb on + strandat 4391.918 kb on + strandat 4391.918 kb on + strandat 4391.920 kb on + strandat 4391.922 kb on + strandat 4391.925 kb on + strandat 4391.925 kb on + strandat 4391.925 kb on + strandat 4391.930 kb on - strandat 4391.930 kb on - strandat 4391.933 kb on - strandat 4391.933 kb on - strandat 4391.939 kb on + strandat 4391.944 kb on + strandat 4391.952 kb on - strandat 4391.952 kb on - strandat 4391.954 kb on - strandat 4391.961 kb on + strandat 4391.961 kb on + strandat 4391.963 kb on + strandat 4391.968 kb on - strandat 4391.969 kb on - strandat 4391.969 kb on - strandat 4391.969 kb on - strandat 4391.971 kb on - strandat 4392.025 kb on + strand, within MPMX20_04187at 4392.033 kb on - strand, within MPMX20_04187at 4392.038 kb on - strand, within MPMX20_04187at 4392.040 kb on - strand, within MPMX20_04187at 4392.045 kb on - strand, within MPMX20_04187at 4392.072 kb on - strand, within MPMX20_04187at 4392.101 kb on - strand, within MPMX20_04187at 4392.111 kb on - strand, within MPMX20_04187at 4392.129 kb on + strand, within MPMX20_04187at 4392.139 kb on + strand, within MPMX20_04187at 4392.176 kb on + strand, within MPMX20_04187at 4392.176 kb on + strand, within MPMX20_04187at 4392.176 kb on + strand, within MPMX20_04187at 4392.177 kb on + strand, within MPMX20_04187at 4392.184 kb on - strand, within MPMX20_04187at 4392.185 kb on - strand, within MPMX20_04187at 4392.185 kb on - strand, within MPMX20_04187at 4392.185 kb on - strand, within MPMX20_04187at 4392.185 kb on - strand, within MPMX20_04187at 4392.185 kb on - strand, within MPMX20_04187at 4392.190 kb on - strand, within MPMX20_04187at 4392.202 kb on + strand, within MPMX20_04187at 4392.234 kb on + strand, within MPMX20_04187at 4392.242 kb on - strand, within MPMX20_04187at 4392.303 kb on - strand, within MPMX20_04187at 4392.334 kb on + strand, within MPMX20_04187at 4392.337 kb on + strand, within MPMX20_04187at 4392.342 kb on + strand, within MPMX20_04187at 4392.342 kb on - strand, within MPMX20_04187at 4392.354 kb on + strand, within MPMX20_04187at 4392.362 kb on - strand, within MPMX20_04187at 4392.382 kb on - strand, within MPMX20_04187at 4392.416 kb on - strand, within MPMX20_04187at 4392.430 kb on - strand, within MPMX20_04187at 4392.452 kb on - strandat 4392.489 kb on + strandat 4392.497 kb on - strandat 4392.498 kb on - strandat 4392.503 kb on - strandat 4392.503 kb on - strandat 4392.508 kb on - strand, within MPMX20_04188at 4392.508 kb on - strand, within MPMX20_04188at 4392.577 kb on + strand, within MPMX20_04188at 4392.586 kb on + strand, within MPMX20_04188at 4392.586 kb on + strand, within MPMX20_04188at 4392.687 kb on - strand, within MPMX20_04188at 4392.732 kb on - strandat 4392.738 kb on + strandat 4392.775 kb on + strandat 4392.777 kb on + strandat 4392.783 kb on - strandat 4392.785 kb on - strandat 4392.785 kb on - strandat 4392.796 kb on - strandat 4392.837 kb on - strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.864 kb on + strand, within MPMX20_04189at 4392.867 kb on - strand, within MPMX20_04189at 4392.872 kb on - strand, within MPMX20_04189at 4392.872 kb on - strand, within MPMX20_04189at 4392.999 kb on + strand, within MPMX20_04189at 4393.048 kb on + strand, within MPMX20_04189at 4393.115 kb on + strand, within MPMX20_04189at 4393.115 kb on + strand, within MPMX20_04189at 4393.148 kb on - strand, within MPMX20_04189at 4393.171 kb on + strand, within MPMX20_04189at 4393.278 kb on + strand, within MPMX20_04189at 4393.286 kb on - strand, within MPMX20_04189at 4393.286 kb on - strand, within MPMX20_04189at 4393.305 kb on - strand, within MPMX20_04189at 4393.343 kb on - strand, within MPMX20_04189at 4393.344 kb on - strand, within MPMX20_04189at 4393.394 kb on + strand, within MPMX20_04189at 4393.483 kb on - strandat 4393.497 kb on - strandat 4393.497 kb on - strandat 4393.497 kb on - strandat 4393.504 kb on + strandat 4393.507 kb on - strandat 4393.555 kb on - strandat 4394.124 kb on + strandat 4394.124 kb on + strandat 4394.154 kb on + strandat 4394.225 kb on - strand, within MPMX20_04191at 4394.227 kb on + strand, within MPMX20_04191at 4394.235 kb on - strand, within MPMX20_04191at 4394.311 kb on - strand, within MPMX20_04191at 4394.314 kb on + strand, within MPMX20_04191at 4394.319 kb on + strand, within MPMX20_04191at 4394.355 kb on + strand, within MPMX20_04191at 4394.363 kb on - strand, within MPMX20_04191at 4394.415 kb on - strand, within MPMX20_04191at 4394.476 kb on + strand, within MPMX20_04191at 4394.538 kb on + strand, within MPMX20_04191

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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4,391,736 - -1.0
4,391,736 - -0.5
4,391,736 - +0.3
4,391,736 - -0.3
4,391,736 - -0.8
4,391,736 - -1.9
4,391,749 + -0.5
4,391,772 + -1.1
4,391,772 + +0.9
4,391,883 + -0.1
4,391,902 - -0.0
4,391,903 + +0.5
4,391,918 + +0.3
4,391,918 + +0.1
4,391,920 + +0.5
4,391,922 + -0.6
4,391,925 + +0.9
4,391,925 + -0.0
4,391,925 + +0.2
4,391,930 - -0.7
4,391,930 - -0.5
4,391,933 - +0.6
4,391,933 - -0.3
4,391,939 + -0.5
4,391,944 + -1.0
4,391,952 - +0.3
4,391,952 - -0.1
4,391,954 - +1.1
4,391,961 + +0.3
4,391,961 + +0.9
4,391,963 + -0.2
4,391,968 - -0.0
4,391,969 - -0.8
4,391,969 - -0.6
4,391,969 - +0.0
4,391,971 - +1.1
4,392,025 + MPMX20_04187 0.13 +0.6
4,392,033 - MPMX20_04187 0.15 +0.7
4,392,038 - MPMX20_04187 0.15 -0.2
4,392,040 - MPMX20_04187 0.16 +0.1
4,392,045 - MPMX20_04187 0.17 +0.6
4,392,072 - MPMX20_04187 0.22 +1.3
4,392,101 - MPMX20_04187 0.27 +0.1
4,392,111 - MPMX20_04187 0.29 +0.2
4,392,129 + MPMX20_04187 0.32 +0.3
4,392,139 + MPMX20_04187 0.34 -1.4
4,392,176 + MPMX20_04187 0.40 +0.3
4,392,176 + MPMX20_04187 0.40 -0.1
4,392,176 + MPMX20_04187 0.40 +0.2
4,392,177 + MPMX20_04187 0.41 -0.4
4,392,184 - MPMX20_04187 0.42 -0.2
4,392,185 - MPMX20_04187 0.42 -0.3
4,392,185 - MPMX20_04187 0.42 +0.8
4,392,185 - MPMX20_04187 0.42 +0.2
4,392,185 - MPMX20_04187 0.42 -0.0
4,392,185 - MPMX20_04187 0.42 +0.8
4,392,190 - MPMX20_04187 0.43 -0.7
4,392,202 + MPMX20_04187 0.45 -0.6
4,392,234 + MPMX20_04187 0.51 -0.1
4,392,242 - MPMX20_04187 0.52 +0.6
4,392,303 - MPMX20_04187 0.63 +0.3
4,392,334 + MPMX20_04187 0.69 +0.5
4,392,337 + MPMX20_04187 0.69 -0.2
4,392,342 + MPMX20_04187 0.70 -0.5
4,392,342 - MPMX20_04187 0.70 +0.1
4,392,354 + MPMX20_04187 0.72 +0.4
4,392,362 - MPMX20_04187 0.74 -2.1
4,392,382 - MPMX20_04187 0.77 -2.1
4,392,416 - MPMX20_04187 0.84 +0.2
4,392,430 - MPMX20_04187 0.86 +0.6
4,392,452 - -0.3
4,392,489 + -0.0
4,392,497 - -1.3
4,392,498 - -0.1
4,392,503 - +0.2
4,392,503 - +1.0
4,392,508 - MPMX20_04188 0.10 +0.3
4,392,508 - MPMX20_04188 0.10 +0.1
4,392,577 + MPMX20_04188 0.38 -0.6
4,392,586 + MPMX20_04188 0.42 +0.0
4,392,586 + MPMX20_04188 0.42 +0.3
4,392,687 - MPMX20_04188 0.82 +1.0
4,392,732 - -0.1
4,392,738 + +0.1
4,392,775 + +0.6
4,392,777 + +0.9
4,392,783 - -1.9
4,392,785 - -0.8
4,392,785 - +1.0
4,392,796 - -0.4
4,392,837 - MPMX20_04189 0.13 -1.3
4,392,864 + MPMX20_04189 0.17 -1.1
4,392,864 + MPMX20_04189 0.17 -2.6
4,392,864 + MPMX20_04189 0.17 -0.9
4,392,864 + MPMX20_04189 0.17 -0.5
4,392,864 + MPMX20_04189 0.17 -2.6
4,392,864 + MPMX20_04189 0.17 -1.3
4,392,864 + MPMX20_04189 0.17 -1.6
4,392,864 + MPMX20_04189 0.17 +0.9
4,392,867 - MPMX20_04189 0.17 -1.5
4,392,872 - MPMX20_04189 0.18 -0.5
4,392,872 - MPMX20_04189 0.18 -0.3
4,392,999 + MPMX20_04189 0.33 -0.4
4,393,048 + MPMX20_04189 0.39 +1.9
4,393,115 + MPMX20_04189 0.47 -1.2
4,393,115 + MPMX20_04189 0.47 -1.2
4,393,148 - MPMX20_04189 0.51 -1.0
4,393,171 + MPMX20_04189 0.54 -1.5
4,393,278 + MPMX20_04189 0.67 -1.1
4,393,286 - MPMX20_04189 0.68 -1.5
4,393,286 - MPMX20_04189 0.68 -0.9
4,393,305 - MPMX20_04189 0.71 +0.9
4,393,343 - MPMX20_04189 0.75 -0.4
4,393,344 - MPMX20_04189 0.75 +0.0
4,393,394 + MPMX20_04189 0.81 -0.5
4,393,483 - +1.2
4,393,497 - +1.7
4,393,497 - -0.4
4,393,497 - -0.6
4,393,504 + -2.4
4,393,507 - -0.3
4,393,555 - +1.5
4,394,124 + +0.2
4,394,124 + +0.4
4,394,154 + +0.4
4,394,225 - MPMX20_04191 0.20 -1.0
4,394,227 + MPMX20_04191 0.21 +0.1
4,394,235 - MPMX20_04191 0.22 -1.0
4,394,311 - MPMX20_04191 0.36 -0.1
4,394,314 + MPMX20_04191 0.36 +0.1
4,394,319 + MPMX20_04191 0.37 -0.1
4,394,355 + MPMX20_04191 0.44 -1.1
4,394,363 - MPMX20_04191 0.45 +0.9
4,394,415 - MPMX20_04191 0.54 +0.3
4,394,476 + MPMX20_04191 0.65 +0.7
4,394,538 + MPMX20_04191 0.76 -0.2

Or see this region's nucleotide sequence