Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04187 and MPMX20_04188 overlap by 25 nucleotides MPMX20_04188 and MPMX20_04189 overlap by 4 nucleotides MPMX20_04189 and MPMX20_04190 are separated by 4 nucleotides MPMX20_04190 and MPMX20_04191 overlap by 11 nucleotides
MPMX20_04187: MPMX20_04187 - Protein YrdA, at 4,391,952 to 4,392,506
_04187
MPMX20_04188: MPMX20_04188 - hypothetical protein, at 4,392,482 to 4,392,730
_04188
MPMX20_04189: MPMX20_04189 - Shikimate dehydrogenase (NADP(+)), at 4,392,727 to 4,393,545
_04189
MPMX20_04190: MPMX20_04190 - Threonylcarbamoyl-AMP synthase, at 4,393,550 to 4,394,122
_04190
MPMX20_04191: MPMX20_04191 - DNA topoisomerase 1, at 4,394,112 to 4,394,669
_04191
Position (kb)
4392
4393
4394 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4391.736 kb on - strand at 4391.736 kb on - strand at 4391.736 kb on - strand at 4391.736 kb on - strand at 4391.736 kb on - strand at 4391.736 kb on - strand at 4391.749 kb on + strand at 4391.772 kb on + strand at 4391.772 kb on + strand at 4391.883 kb on + strand at 4391.902 kb on - strand at 4391.903 kb on + strand at 4391.918 kb on + strand at 4391.918 kb on + strand at 4391.920 kb on + strand at 4391.922 kb on + strand at 4391.925 kb on + strand at 4391.925 kb on + strand at 4391.925 kb on + strand at 4391.930 kb on - strand at 4391.930 kb on - strand at 4391.933 kb on - strand at 4391.933 kb on - strand at 4391.939 kb on + strand at 4391.944 kb on + strand at 4391.952 kb on - strand at 4391.952 kb on - strand at 4391.954 kb on - strand at 4391.961 kb on + strand at 4391.961 kb on + strand at 4391.963 kb on + strand at 4391.968 kb on - strand at 4391.969 kb on - strand at 4391.969 kb on - strand at 4391.969 kb on - strand at 4391.971 kb on - strand at 4392.025 kb on + strand, within MPMX20_04187 at 4392.033 kb on - strand, within MPMX20_04187 at 4392.038 kb on - strand, within MPMX20_04187 at 4392.040 kb on - strand, within MPMX20_04187 at 4392.045 kb on - strand, within MPMX20_04187 at 4392.072 kb on - strand, within MPMX20_04187 at 4392.101 kb on - strand, within MPMX20_04187 at 4392.111 kb on - strand, within MPMX20_04187 at 4392.129 kb on + strand, within MPMX20_04187 at 4392.139 kb on + strand, within MPMX20_04187 at 4392.176 kb on + strand, within MPMX20_04187 at 4392.176 kb on + strand, within MPMX20_04187 at 4392.176 kb on + strand, within MPMX20_04187 at 4392.177 kb on + strand, within MPMX20_04187 at 4392.184 kb on - strand, within MPMX20_04187 at 4392.185 kb on - strand, within MPMX20_04187 at 4392.185 kb on - strand, within MPMX20_04187 at 4392.185 kb on - strand, within MPMX20_04187 at 4392.185 kb on - strand, within MPMX20_04187 at 4392.185 kb on - strand, within MPMX20_04187 at 4392.190 kb on - strand, within MPMX20_04187 at 4392.202 kb on + strand, within MPMX20_04187 at 4392.234 kb on + strand, within MPMX20_04187 at 4392.242 kb on - strand, within MPMX20_04187 at 4392.303 kb on - strand, within MPMX20_04187 at 4392.334 kb on + strand, within MPMX20_04187 at 4392.337 kb on + strand, within MPMX20_04187 at 4392.342 kb on + strand, within MPMX20_04187 at 4392.342 kb on - strand, within MPMX20_04187 at 4392.354 kb on + strand, within MPMX20_04187 at 4392.362 kb on - strand, within MPMX20_04187 at 4392.382 kb on - strand, within MPMX20_04187 at 4392.416 kb on - strand, within MPMX20_04187 at 4392.430 kb on - strand, within MPMX20_04187 at 4392.452 kb on - strand at 4392.489 kb on + strand at 4392.497 kb on - strand at 4392.498 kb on - strand at 4392.503 kb on - strand at 4392.503 kb on - strand at 4392.508 kb on - strand, within MPMX20_04188 at 4392.508 kb on - strand, within MPMX20_04188 at 4392.577 kb on + strand, within MPMX20_04188 at 4392.586 kb on + strand, within MPMX20_04188 at 4392.586 kb on + strand, within MPMX20_04188 at 4392.687 kb on - strand, within MPMX20_04188 at 4392.732 kb on - strand at 4392.738 kb on + strand at 4392.775 kb on + strand at 4392.777 kb on + strand at 4392.783 kb on - strand at 4392.785 kb on - strand at 4392.785 kb on - strand at 4392.796 kb on - strand at 4392.837 kb on - strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.864 kb on + strand, within MPMX20_04189 at 4392.867 kb on - strand, within MPMX20_04189 at 4392.872 kb on - strand, within MPMX20_04189 at 4392.872 kb on - strand, within MPMX20_04189 at 4392.999 kb on + strand, within MPMX20_04189 at 4393.048 kb on + strand, within MPMX20_04189 at 4393.115 kb on + strand, within MPMX20_04189 at 4393.115 kb on + strand, within MPMX20_04189 at 4393.148 kb on - strand, within MPMX20_04189 at 4393.171 kb on + strand, within MPMX20_04189 at 4393.278 kb on + strand, within MPMX20_04189 at 4393.286 kb on - strand, within MPMX20_04189 at 4393.286 kb on - strand, within MPMX20_04189 at 4393.305 kb on - strand, within MPMX20_04189 at 4393.343 kb on - strand, within MPMX20_04189 at 4393.344 kb on - strand, within MPMX20_04189 at 4393.394 kb on + strand, within MPMX20_04189 at 4393.483 kb on - strand at 4393.497 kb on - strand at 4393.497 kb on - strand at 4393.497 kb on - strand at 4393.504 kb on + strand at 4393.507 kb on - strand at 4393.555 kb on - strand at 4394.124 kb on + strand at 4394.124 kb on + strand at 4394.154 kb on + strand at 4394.225 kb on - strand, within MPMX20_04191 at 4394.227 kb on + strand, within MPMX20_04191 at 4394.235 kb on - strand, within MPMX20_04191 at 4394.311 kb on - strand, within MPMX20_04191 at 4394.314 kb on + strand, within MPMX20_04191 at 4394.319 kb on + strand, within MPMX20_04191 at 4394.355 kb on + strand, within MPMX20_04191 at 4394.363 kb on - strand, within MPMX20_04191 at 4394.415 kb on - strand, within MPMX20_04191 at 4394.476 kb on + strand, within MPMX20_04191 at 4394.538 kb on + strand, within MPMX20_04191
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 4,391,736 - -1.0 4,391,736 - -0.5 4,391,736 - +0.3 4,391,736 - -0.3 4,391,736 - -0.8 4,391,736 - -1.9 4,391,749 + -0.5 4,391,772 + -1.1 4,391,772 + +0.9 4,391,883 + -0.1 4,391,902 - -0.0 4,391,903 + +0.5 4,391,918 + +0.3 4,391,918 + +0.1 4,391,920 + +0.5 4,391,922 + -0.6 4,391,925 + +0.9 4,391,925 + -0.0 4,391,925 + +0.2 4,391,930 - -0.7 4,391,930 - -0.5 4,391,933 - +0.6 4,391,933 - -0.3 4,391,939 + -0.5 4,391,944 + -1.0 4,391,952 - +0.3 4,391,952 - -0.1 4,391,954 - +1.1 4,391,961 + +0.3 4,391,961 + +0.9 4,391,963 + -0.2 4,391,968 - -0.0 4,391,969 - -0.8 4,391,969 - -0.6 4,391,969 - +0.0 4,391,971 - +1.1 4,392,025 + MPMX20_04187 0.13 +0.6 4,392,033 - MPMX20_04187 0.15 +0.7 4,392,038 - MPMX20_04187 0.15 -0.2 4,392,040 - MPMX20_04187 0.16 +0.1 4,392,045 - MPMX20_04187 0.17 +0.6 4,392,072 - MPMX20_04187 0.22 +1.3 4,392,101 - MPMX20_04187 0.27 +0.1 4,392,111 - MPMX20_04187 0.29 +0.2 4,392,129 + MPMX20_04187 0.32 +0.3 4,392,139 + MPMX20_04187 0.34 -1.4 4,392,176 + MPMX20_04187 0.40 +0.3 4,392,176 + MPMX20_04187 0.40 -0.1 4,392,176 + MPMX20_04187 0.40 +0.2 4,392,177 + MPMX20_04187 0.41 -0.4 4,392,184 - MPMX20_04187 0.42 -0.2 4,392,185 - MPMX20_04187 0.42 -0.3 4,392,185 - MPMX20_04187 0.42 +0.8 4,392,185 - MPMX20_04187 0.42 +0.2 4,392,185 - MPMX20_04187 0.42 -0.0 4,392,185 - MPMX20_04187 0.42 +0.8 4,392,190 - MPMX20_04187 0.43 -0.7 4,392,202 + MPMX20_04187 0.45 -0.6 4,392,234 + MPMX20_04187 0.51 -0.1 4,392,242 - MPMX20_04187 0.52 +0.6 4,392,303 - MPMX20_04187 0.63 +0.3 4,392,334 + MPMX20_04187 0.69 +0.5 4,392,337 + MPMX20_04187 0.69 -0.2 4,392,342 + MPMX20_04187 0.70 -0.5 4,392,342 - MPMX20_04187 0.70 +0.1 4,392,354 + MPMX20_04187 0.72 +0.4 4,392,362 - MPMX20_04187 0.74 -2.1 4,392,382 - MPMX20_04187 0.77 -2.1 4,392,416 - MPMX20_04187 0.84 +0.2 4,392,430 - MPMX20_04187 0.86 +0.6 4,392,452 - -0.3 4,392,489 + -0.0 4,392,497 - -1.3 4,392,498 - -0.1 4,392,503 - +0.2 4,392,503 - +1.0 4,392,508 - MPMX20_04188 0.10 +0.3 4,392,508 - MPMX20_04188 0.10 +0.1 4,392,577 + MPMX20_04188 0.38 -0.6 4,392,586 + MPMX20_04188 0.42 +0.0 4,392,586 + MPMX20_04188 0.42 +0.3 4,392,687 - MPMX20_04188 0.82 +1.0 4,392,732 - -0.1 4,392,738 + +0.1 4,392,775 + +0.6 4,392,777 + +0.9 4,392,783 - -1.9 4,392,785 - -0.8 4,392,785 - +1.0 4,392,796 - -0.4 4,392,837 - MPMX20_04189 0.13 -1.3 4,392,864 + MPMX20_04189 0.17 -1.1 4,392,864 + MPMX20_04189 0.17 -2.6 4,392,864 + MPMX20_04189 0.17 -0.9 4,392,864 + MPMX20_04189 0.17 -0.5 4,392,864 + MPMX20_04189 0.17 -2.6 4,392,864 + MPMX20_04189 0.17 -1.3 4,392,864 + MPMX20_04189 0.17 -1.6 4,392,864 + MPMX20_04189 0.17 +0.9 4,392,867 - MPMX20_04189 0.17 -1.5 4,392,872 - MPMX20_04189 0.18 -0.5 4,392,872 - MPMX20_04189 0.18 -0.3 4,392,999 + MPMX20_04189 0.33 -0.4 4,393,048 + MPMX20_04189 0.39 +1.9 4,393,115 + MPMX20_04189 0.47 -1.2 4,393,115 + MPMX20_04189 0.47 -1.2 4,393,148 - MPMX20_04189 0.51 -1.0 4,393,171 + MPMX20_04189 0.54 -1.5 4,393,278 + MPMX20_04189 0.67 -1.1 4,393,286 - MPMX20_04189 0.68 -1.5 4,393,286 - MPMX20_04189 0.68 -0.9 4,393,305 - MPMX20_04189 0.71 +0.9 4,393,343 - MPMX20_04189 0.75 -0.4 4,393,344 - MPMX20_04189 0.75 +0.0 4,393,394 + MPMX20_04189 0.81 -0.5 4,393,483 - +1.2 4,393,497 - +1.7 4,393,497 - -0.4 4,393,497 - -0.6 4,393,504 + -2.4 4,393,507 - -0.3 4,393,555 - +1.5 4,394,124 + +0.2 4,394,124 + +0.4 4,394,154 + +0.4 4,394,225 - MPMX20_04191 0.20 -1.0 4,394,227 + MPMX20_04191 0.21 +0.1 4,394,235 - MPMX20_04191 0.22 -1.0 4,394,311 - MPMX20_04191 0.36 -0.1 4,394,314 + MPMX20_04191 0.36 +0.1 4,394,319 + MPMX20_04191 0.37 -0.1 4,394,355 + MPMX20_04191 0.44 -1.1 4,394,363 - MPMX20_04191 0.45 +0.9 4,394,415 - MPMX20_04191 0.54 +0.3 4,394,476 + MPMX20_04191 0.65 +0.7 4,394,538 + MPMX20_04191 0.76 -0.2
Or see this region's nucleotide sequence