Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03751 and MPMX20_03752 are separated by 5 nucleotides MPMX20_03752 and MPMX20_03753 are separated by 23 nucleotides MPMX20_03753 and MPMX20_03754 are separated by 101 nucleotides MPMX20_03754 and MPMX20_03755 are separated by 6 nucleotides
MPMX20_03751: MPMX20_03751 - Single-stranded-DNA-specific exonuclease RecJ, at 3,953,154 to 3,954,887
_03751
MPMX20_03752: MPMX20_03752 - Thiol:disulfide interchange protein DsbC, at 3,954,893 to 3,955,606
_03752
MPMX20_03753: MPMX20_03753 - Tyrosine recombinase XerD, at 3,955,630 to 3,956,526
_03753
MPMX20_03754: MPMX20_03754 - Flavodoxin 2, at 3,956,628 to 3,957,149
_03754
MPMX20_03755: MPMX20_03755 - Inner membrane protein YgfX, at 3,957,156 to 3,957,566
_03755
Position (kb)
3955
3956
3957 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3954.667 kb on - strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.749 kb on + strand at 3954.749 kb on + strand at 3954.757 kb on - strand at 3954.757 kb on - strand at 3954.757 kb on - strand at 3954.929 kb on - strand at 3954.951 kb on - strand at 3954.975 kb on - strand, within MPMX20_03752 at 3954.980 kb on + strand, within MPMX20_03752 at 3954.988 kb on - strand, within MPMX20_03752 at 3955.037 kb on - strand, within MPMX20_03752 at 3955.037 kb on - strand, within MPMX20_03752 at 3955.134 kb on + strand, within MPMX20_03752 at 3955.144 kb on + strand, within MPMX20_03752 at 3955.144 kb on + strand, within MPMX20_03752 at 3955.202 kb on - strand, within MPMX20_03752 at 3955.202 kb on - strand, within MPMX20_03752 at 3955.234 kb on + strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.326 kb on + strand, within MPMX20_03752 at 3955.369 kb on + strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.433 kb on - strand, within MPMX20_03752 at 3955.435 kb on + strand, within MPMX20_03752 at 3955.490 kb on - strand, within MPMX20_03752 at 3955.492 kb on - strand, within MPMX20_03752 at 3955.494 kb on - strand, within MPMX20_03752 at 3955.503 kb on + strand, within MPMX20_03752 at 3955.523 kb on + strand, within MPMX20_03752 at 3955.533 kb on - strand, within MPMX20_03752 at 3955.580 kb on + strand at 3955.645 kb on - strand at 3955.645 kb on - strand at 3955.737 kb on - strand, within MPMX20_03753 at 3955.830 kb on + strand, within MPMX20_03753 at 3955.919 kb on + strand, within MPMX20_03753 at 3955.942 kb on + strand, within MPMX20_03753 at 3955.982 kb on - strand, within MPMX20_03753 at 3955.984 kb on - strand, within MPMX20_03753 at 3955.989 kb on + strand, within MPMX20_03753 at 3956.034 kb on - strand, within MPMX20_03753 at 3956.043 kb on + strand, within MPMX20_03753 at 3956.043 kb on + strand, within MPMX20_03753 at 3956.043 kb on + strand, within MPMX20_03753 at 3956.051 kb on - strand, within MPMX20_03753 at 3956.081 kb on - strand, within MPMX20_03753 at 3956.096 kb on + strand, within MPMX20_03753 at 3956.118 kb on - strand, within MPMX20_03753 at 3956.185 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.232 kb on - strand, within MPMX20_03753 at 3956.232 kb on - strand, within MPMX20_03753 at 3956.264 kb on + strand, within MPMX20_03753 at 3956.297 kb on - strand, within MPMX20_03753 at 3956.307 kb on - strand, within MPMX20_03753 at 3956.329 kb on + strand, within MPMX20_03753 at 3956.333 kb on + strand, within MPMX20_03753 at 3956.355 kb on - strand, within MPMX20_03753 at 3956.424 kb on + strand, within MPMX20_03753 at 3956.439 kb on + strand at 3956.444 kb on + strand at 3956.486 kb on - strand at 3956.518 kb on + strand at 3956.578 kb on + strand at 3956.580 kb on + strand at 3956.588 kb on - strand at 3956.614 kb on - strand at 3956.632 kb on + strand at 3956.637 kb on + strand at 3956.640 kb on - strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.668 kb on - strand at 3956.704 kb on + strand, within MPMX20_03754 at 3956.712 kb on - strand, within MPMX20_03754 at 3956.729 kb on + strand, within MPMX20_03754 at 3956.743 kb on + strand, within MPMX20_03754 at 3956.777 kb on - strand, within MPMX20_03754 at 3956.830 kb on + strand, within MPMX20_03754 at 3956.834 kb on - strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.970 kb on - strand, within MPMX20_03754 at 3956.988 kb on + strand, within MPMX20_03754 at 3957.059 kb on + strand, within MPMX20_03754 at 3957.062 kb on - strand, within MPMX20_03754 at 3957.130 kb on + strand at 3957.208 kb on + strand, within MPMX20_03755 at 3957.211 kb on - strand, within MPMX20_03755 at 3957.212 kb on + strand, within MPMX20_03755 at 3957.214 kb on + strand, within MPMX20_03755 at 3957.216 kb on - strand, within MPMX20_03755 at 3957.216 kb on - strand, within MPMX20_03755 at 3957.230 kb on - strand, within MPMX20_03755 at 3957.230 kb on - strand, within MPMX20_03755 at 3957.237 kb on - strand, within MPMX20_03755 at 3957.306 kb on - strand, within MPMX20_03755 at 3957.411 kb on + strand, within MPMX20_03755 at 3957.427 kb on - strand, within MPMX20_03755 at 3957.459 kb on - strand, within MPMX20_03755 at 3957.472 kb on - strand, within MPMX20_03755 at 3957.476 kb on + strand, within MPMX20_03755 at 3957.480 kb on + strand, within MPMX20_03755 at 3957.494 kb on - strand, within MPMX20_03755 at 3957.514 kb on + strand, within MPMX20_03755
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,954,667 - MPMX20_03751 0.87 -0.6 3,954,676 + MPMX20_03751 0.88 -1.5 3,954,676 + MPMX20_03751 0.88 +0.1 3,954,676 + MPMX20_03751 0.88 -0.1 3,954,676 + MPMX20_03751 0.88 -0.3 3,954,684 - MPMX20_03751 0.88 +0.9 3,954,684 - MPMX20_03751 0.88 -0.4 3,954,684 - MPMX20_03751 0.88 +0.4 3,954,684 - MPMX20_03751 0.88 -0.8 3,954,684 - MPMX20_03751 0.88 -0.5 3,954,684 - MPMX20_03751 0.88 -0.4 3,954,684 - MPMX20_03751 0.88 -1.0 3,954,749 + +0.0 3,954,749 + +1.8 3,954,757 - -0.1 3,954,757 - -0.6 3,954,757 - +0.4 3,954,929 - +0.6 3,954,951 - +0.3 3,954,975 - MPMX20_03752 0.11 +0.1 3,954,980 + MPMX20_03752 0.12 +0.5 3,954,988 - MPMX20_03752 0.13 +0.7 3,955,037 - MPMX20_03752 0.20 +0.9 3,955,037 - MPMX20_03752 0.20 +0.3 3,955,134 + MPMX20_03752 0.34 -1.4 3,955,144 + MPMX20_03752 0.35 -1.7 3,955,144 + MPMX20_03752 0.35 +0.4 3,955,202 - MPMX20_03752 0.43 +0.0 3,955,202 - MPMX20_03752 0.43 -0.7 3,955,234 + MPMX20_03752 0.48 -2.2 3,955,242 - MPMX20_03752 0.49 -0.8 3,955,242 - MPMX20_03752 0.49 -0.8 3,955,242 - MPMX20_03752 0.49 -0.2 3,955,326 + MPMX20_03752 0.61 -0.1 3,955,369 + MPMX20_03752 0.67 +1.3 3,955,377 - MPMX20_03752 0.68 -0.4 3,955,377 - MPMX20_03752 0.68 +0.5 3,955,377 - MPMX20_03752 0.68 -0.2 3,955,377 - MPMX20_03752 0.68 +0.5 3,955,377 - MPMX20_03752 0.68 +1.3 3,955,433 - MPMX20_03752 0.76 -0.2 3,955,435 + MPMX20_03752 0.76 -0.9 3,955,490 - MPMX20_03752 0.84 +0.6 3,955,492 - MPMX20_03752 0.84 -0.0 3,955,494 - MPMX20_03752 0.84 +0.6 3,955,503 + MPMX20_03752 0.85 -1.0 3,955,523 + MPMX20_03752 0.88 -0.4 3,955,533 - MPMX20_03752 0.90 -2.4 3,955,580 + -0.9 3,955,645 - -0.1 3,955,645 - +0.7 3,955,737 - MPMX20_03753 0.12 -1.5 3,955,830 + MPMX20_03753 0.22 -2.1 3,955,919 + MPMX20_03753 0.32 -2.4 3,955,942 + MPMX20_03753 0.35 -2.7 3,955,982 - MPMX20_03753 0.39 -1.6 3,955,984 - MPMX20_03753 0.39 -0.9 3,955,989 + MPMX20_03753 0.40 -1.2 3,956,034 - MPMX20_03753 0.45 -2.6 3,956,043 + MPMX20_03753 0.46 -1.0 3,956,043 + MPMX20_03753 0.46 -3.0 3,956,043 + MPMX20_03753 0.46 -0.5 3,956,051 - MPMX20_03753 0.47 -1.9 3,956,081 - MPMX20_03753 0.50 -2.6 3,956,096 + MPMX20_03753 0.52 -1.7 3,956,118 - MPMX20_03753 0.54 -1.8 3,956,185 + MPMX20_03753 0.62 -1.6 3,956,224 + MPMX20_03753 0.66 -1.6 3,956,224 + MPMX20_03753 0.66 -1.9 3,956,224 + MPMX20_03753 0.66 -3.6 3,956,224 + MPMX20_03753 0.66 +0.9 3,956,224 + MPMX20_03753 0.66 -0.9 3,956,232 - MPMX20_03753 0.67 -1.3 3,956,232 - MPMX20_03753 0.67 -0.4 3,956,264 + MPMX20_03753 0.71 -3.0 3,956,297 - MPMX20_03753 0.74 -0.9 3,956,307 - MPMX20_03753 0.75 -0.3 3,956,329 + MPMX20_03753 0.78 -1.2 3,956,333 + MPMX20_03753 0.78 -0.1 3,956,355 - MPMX20_03753 0.81 -1.7 3,956,424 + MPMX20_03753 0.89 -1.7 3,956,439 + -0.8 3,956,444 + -1.8 3,956,486 - -1.4 3,956,518 + -0.6 3,956,578 + +1.5 3,956,580 + -2.1 3,956,588 - -0.3 3,956,614 - -0.4 3,956,632 + +0.3 3,956,637 + +1.5 3,956,640 - +1.3 3,956,642 + -1.1 3,956,642 + -2.9 3,956,642 + +0.1 3,956,642 + -0.2 3,956,650 - -0.6 3,956,650 - -2.3 3,956,650 - -0.7 3,956,650 - -1.5 3,956,650 - -1.1 3,956,668 - -1.9 3,956,704 + MPMX20_03754 0.15 +0.1 3,956,712 - MPMX20_03754 0.16 -0.3 3,956,729 + MPMX20_03754 0.19 -3.2 3,956,743 + MPMX20_03754 0.22 -0.2 3,956,777 - MPMX20_03754 0.29 -0.7 3,956,830 + MPMX20_03754 0.39 -0.5 3,956,834 - MPMX20_03754 0.39 +0.9 3,956,900 + MPMX20_03754 0.52 -0.7 3,956,900 + MPMX20_03754 0.52 -0.4 3,956,900 + MPMX20_03754 0.52 -0.3 3,956,900 + MPMX20_03754 0.52 -1.3 3,956,970 - MPMX20_03754 0.66 -1.2 3,956,988 + MPMX20_03754 0.69 +0.4 3,957,059 + MPMX20_03754 0.83 -0.1 3,957,062 - MPMX20_03754 0.83 +1.8 3,957,130 + +0.7 3,957,208 + MPMX20_03755 0.13 -1.3 3,957,211 - MPMX20_03755 0.13 -0.1 3,957,212 + MPMX20_03755 0.14 -0.2 3,957,214 + MPMX20_03755 0.14 +0.4 3,957,216 - MPMX20_03755 0.15 +0.3 3,957,216 - MPMX20_03755 0.15 -0.3 3,957,230 - MPMX20_03755 0.18 -0.5 3,957,230 - MPMX20_03755 0.18 +1.7 3,957,237 - MPMX20_03755 0.20 -1.5 3,957,306 - MPMX20_03755 0.36 -1.6 3,957,411 + MPMX20_03755 0.62 +0.2 3,957,427 - MPMX20_03755 0.66 -0.3 3,957,459 - MPMX20_03755 0.74 -1.2 3,957,472 - MPMX20_03755 0.77 -0.4 3,957,476 + MPMX20_03755 0.78 -0.1 3,957,480 + MPMX20_03755 0.79 -0.8 3,957,494 - MPMX20_03755 0.82 +0.2 3,957,514 + MPMX20_03755 0.87 -0.7
Or see this region's nucleotide sequence