Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03684 and MPMX20_03685 are separated by 139 nucleotides MPMX20_03685 and MPMX20_03686 are separated by 12 nucleotides MPMX20_03686 and MPMX20_03687 overlap by 16 nucleotides MPMX20_03687 and MPMX20_03688 overlap by 4 nucleotides
MPMX20_03684: MPMX20_03684 - Protease 3, at 3,880,379 to 3,883,261
_03684
MPMX20_03685: MPMX20_03685 - RecBCD enzyme subunit RecC, at 3,883,401 to 3,886,775
_03685
MPMX20_03686: MPMX20_03686 - hypothetical protein, at 3,886,788 to 3,887,111
_03686
MPMX20_03687: MPMX20_03687 - hypothetical protein, at 3,887,096 to 3,887,497
_03687
MPMX20_03688: MPMX20_03688 - hypothetical protein, at 3,887,494 to 3,888,054
_03688
Position (kb)
3883
3884
3885
3886
3887 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3882.492 kb on + strand, within MPMX20_03684 at 3882.564 kb on + strand, within MPMX20_03684 at 3882.619 kb on + strand, within MPMX20_03684 at 3882.619 kb on + strand, within MPMX20_03684 at 3882.624 kb on + strand, within MPMX20_03684 at 3882.627 kb on - strand, within MPMX20_03684 at 3882.690 kb on + strand, within MPMX20_03684 at 3882.699 kb on - strand, within MPMX20_03684 at 3882.705 kb on + strand, within MPMX20_03684 at 3882.742 kb on + strand, within MPMX20_03684 at 3882.749 kb on + strand, within MPMX20_03684 at 3882.750 kb on - strand, within MPMX20_03684 at 3882.752 kb on - strand, within MPMX20_03684 at 3882.752 kb on - strand, within MPMX20_03684 at 3882.835 kb on + strand, within MPMX20_03684 at 3882.848 kb on - strand, within MPMX20_03684 at 3882.857 kb on + strand, within MPMX20_03684 at 3882.857 kb on + strand, within MPMX20_03684 at 3882.905 kb on - strand, within MPMX20_03684 at 3882.988 kb on + strand at 3882.996 kb on - strand at 3883.005 kb on + strand at 3883.184 kb on + strand at 3883.188 kb on + strand at 3883.196 kb on - strand at 3883.207 kb on - strand at 3883.248 kb on + strand at 3883.399 kb on + strand at 3883.399 kb on + strand at 3883.399 kb on + strand at 3883.407 kb on - strand at 3883.407 kb on - strand at 3883.407 kb on - strand at 3883.412 kb on - strand at 3883.440 kb on - strand at 3883.475 kb on - strand at 3883.807 kb on + strand, within MPMX20_03685 at 3883.909 kb on + strand, within MPMX20_03685 at 3883.975 kb on + strand, within MPMX20_03685 at 3884.118 kb on - strand, within MPMX20_03685 at 3884.150 kb on - strand, within MPMX20_03685 at 3884.264 kb on + strand, within MPMX20_03685 at 3884.271 kb on + strand, within MPMX20_03685 at 3884.271 kb on + strand, within MPMX20_03685 at 3884.272 kb on - strand, within MPMX20_03685 at 3884.272 kb on - strand, within MPMX20_03685 at 3884.367 kb on + strand, within MPMX20_03685 at 3884.375 kb on - strand, within MPMX20_03685 at 3884.556 kb on + strand, within MPMX20_03685 at 3884.564 kb on - strand, within MPMX20_03685 at 3884.615 kb on + strand, within MPMX20_03685 at 3884.692 kb on - strand, within MPMX20_03685 at 3884.726 kb on + strand, within MPMX20_03685 at 3884.759 kb on + strand, within MPMX20_03685 at 3884.767 kb on - strand, within MPMX20_03685 at 3884.767 kb on - strand, within MPMX20_03685 at 3885.123 kb on + strand, within MPMX20_03685 at 3885.161 kb on - strand, within MPMX20_03685 at 3885.163 kb on + strand, within MPMX20_03685 at 3885.362 kb on - strand, within MPMX20_03685 at 3885.479 kb on - strand, within MPMX20_03685 at 3885.479 kb on - strand, within MPMX20_03685 at 3885.489 kb on + strand, within MPMX20_03685 at 3885.489 kb on + strand, within MPMX20_03685 at 3885.503 kb on + strand, within MPMX20_03685 at 3885.571 kb on - strand, within MPMX20_03685 at 3885.601 kb on - strand, within MPMX20_03685 at 3885.606 kb on + strand, within MPMX20_03685 at 3885.714 kb on + strand, within MPMX20_03685 at 3885.782 kb on - strand, within MPMX20_03685 at 3885.928 kb on - strand, within MPMX20_03685 at 3885.982 kb on - strand, within MPMX20_03685 at 3886.160 kb on - strand, within MPMX20_03685 at 3886.219 kb on - strand, within MPMX20_03685 at 3886.404 kb on - strand, within MPMX20_03685 at 3886.547 kb on - strand at 3886.814 kb on - strand at 3886.878 kb on - strand, within MPMX20_03686 at 3886.897 kb on - strand, within MPMX20_03686 at 3886.897 kb on - strand, within MPMX20_03686 at 3886.965 kb on - strand, within MPMX20_03686 at 3887.116 kb on - strand at 3887.118 kb on + strand at 3887.299 kb on - strand, within MPMX20_03687 at 3887.312 kb on + strand, within MPMX20_03687 at 3887.344 kb on + strand, within MPMX20_03687 at 3887.389 kb on - strand, within MPMX20_03687 at 3887.553 kb on + strand, within MPMX20_03688 at 3887.561 kb on - strand, within MPMX20_03688 at 3887.614 kb on - strand, within MPMX20_03688 at 3887.616 kb on + strand, within MPMX20_03688 at 3887.641 kb on + strand, within MPMX20_03688 at 3887.649 kb on - strand, within MPMX20_03688 at 3887.665 kb on + strand, within MPMX20_03688 at 3887.665 kb on + strand, within MPMX20_03688 at 3887.666 kb on + strand, within MPMX20_03688 at 3887.666 kb on + strand, within MPMX20_03688 at 3887.709 kb on - strand, within MPMX20_03688 at 3887.735 kb on - strand, within MPMX20_03688 at 3887.766 kb on - strand, within MPMX20_03688
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,882,492 + MPMX20_03684 0.73 -1.0 3,882,564 + MPMX20_03684 0.76 -0.1 3,882,619 + MPMX20_03684 0.78 -0.0 3,882,619 + MPMX20_03684 0.78 +0.3 3,882,624 + MPMX20_03684 0.78 +0.4 3,882,627 - MPMX20_03684 0.78 -0.5 3,882,690 + MPMX20_03684 0.80 -0.5 3,882,699 - MPMX20_03684 0.80 -1.3 3,882,705 + MPMX20_03684 0.81 -0.1 3,882,742 + MPMX20_03684 0.82 +0.2 3,882,749 + MPMX20_03684 0.82 -1.4 3,882,750 - MPMX20_03684 0.82 +0.3 3,882,752 - MPMX20_03684 0.82 +0.3 3,882,752 - MPMX20_03684 0.82 -1.1 3,882,835 + MPMX20_03684 0.85 +0.6 3,882,848 - MPMX20_03684 0.86 +2.0 3,882,857 + MPMX20_03684 0.86 -0.8 3,882,857 + MPMX20_03684 0.86 -0.8 3,882,905 - MPMX20_03684 0.88 +0.1 3,882,988 + +0.9 3,882,996 - +0.9 3,883,005 + -1.2 3,883,184 + +0.6 3,883,188 + +0.9 3,883,196 - -0.3 3,883,207 - +0.5 3,883,248 + -0.0 3,883,399 + +0.2 3,883,399 + -0.6 3,883,399 + -0.1 3,883,407 - +0.2 3,883,407 - +0.4 3,883,407 - +0.1 3,883,412 - +0.4 3,883,440 - -0.3 3,883,475 - -0.1 3,883,807 + MPMX20_03685 0.12 -1.1 3,883,909 + MPMX20_03685 0.15 -1.9 3,883,975 + MPMX20_03685 0.17 -1.1 3,884,118 - MPMX20_03685 0.21 -1.1 3,884,150 - MPMX20_03685 0.22 -0.7 3,884,264 + MPMX20_03685 0.26 -0.7 3,884,271 + MPMX20_03685 0.26 +0.9 3,884,271 + MPMX20_03685 0.26 -1.7 3,884,272 - MPMX20_03685 0.26 -1.7 3,884,272 - MPMX20_03685 0.26 -1.4 3,884,367 + MPMX20_03685 0.29 -2.1 3,884,375 - MPMX20_03685 0.29 -1.4 3,884,556 + MPMX20_03685 0.34 -0.7 3,884,564 - MPMX20_03685 0.34 -0.7 3,884,615 + MPMX20_03685 0.36 -1.7 3,884,692 - MPMX20_03685 0.38 -2.6 3,884,726 + MPMX20_03685 0.39 -2.3 3,884,759 + MPMX20_03685 0.40 -0.7 3,884,767 - MPMX20_03685 0.40 -2.1 3,884,767 - MPMX20_03685 0.40 -2.1 3,885,123 + MPMX20_03685 0.51 -2.3 3,885,161 - MPMX20_03685 0.52 -1.9 3,885,163 + MPMX20_03685 0.52 -2.1 3,885,362 - MPMX20_03685 0.58 -0.7 3,885,479 - MPMX20_03685 0.62 -1.4 3,885,479 - MPMX20_03685 0.62 +0.5 3,885,489 + MPMX20_03685 0.62 -1.4 3,885,489 + MPMX20_03685 0.62 +0.9 3,885,503 + MPMX20_03685 0.62 +0.9 3,885,571 - MPMX20_03685 0.64 -1.1 3,885,601 - MPMX20_03685 0.65 -1.9 3,885,606 + MPMX20_03685 0.65 -1.7 3,885,714 + MPMX20_03685 0.69 -1.9 3,885,782 - MPMX20_03685 0.71 -2.6 3,885,928 - MPMX20_03685 0.75 -1.1 3,885,982 - MPMX20_03685 0.76 -1.1 3,886,160 - MPMX20_03685 0.82 -0.7 3,886,219 - MPMX20_03685 0.83 +0.9 3,886,404 - MPMX20_03685 0.89 -1.1 3,886,547 - -1.7 3,886,814 - -0.3 3,886,878 - MPMX20_03686 0.28 -0.3 3,886,897 - MPMX20_03686 0.34 -2.1 3,886,897 - MPMX20_03686 0.34 -0.2 3,886,965 - MPMX20_03686 0.55 +0.1 3,887,116 - +0.0 3,887,118 + +0.4 3,887,299 - MPMX20_03687 0.50 +0.6 3,887,312 + MPMX20_03687 0.54 -1.7 3,887,344 + MPMX20_03687 0.62 +0.3 3,887,389 - MPMX20_03687 0.73 -0.8 3,887,553 + MPMX20_03688 0.11 +0.9 3,887,561 - MPMX20_03688 0.12 +0.3 3,887,614 - MPMX20_03688 0.21 +0.6 3,887,616 + MPMX20_03688 0.22 +0.5 3,887,641 + MPMX20_03688 0.26 +0.2 3,887,649 - MPMX20_03688 0.28 +0.3 3,887,665 + MPMX20_03688 0.30 -0.0 3,887,665 + MPMX20_03688 0.30 +0.7 3,887,666 + MPMX20_03688 0.31 +0.1 3,887,666 + MPMX20_03688 0.31 +1.4 3,887,709 - MPMX20_03688 0.38 -0.8 3,887,735 - MPMX20_03688 0.43 -0.4 3,887,766 - MPMX20_03688 0.48 +0.4
Or see this region's nucleotide sequence