Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03685

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03684 and MPMX20_03685 are separated by 139 nucleotidesMPMX20_03685 and MPMX20_03686 are separated by 12 nucleotidesMPMX20_03686 and MPMX20_03687 overlap by 16 nucleotidesMPMX20_03687 and MPMX20_03688 overlap by 4 nucleotides MPMX20_03684: MPMX20_03684 - Protease 3, at 3,880,379 to 3,883,261 _03684 MPMX20_03685: MPMX20_03685 - RecBCD enzyme subunit RecC, at 3,883,401 to 3,886,775 _03685 MPMX20_03686: MPMX20_03686 - hypothetical protein, at 3,886,788 to 3,887,111 _03686 MPMX20_03687: MPMX20_03687 - hypothetical protein, at 3,887,096 to 3,887,497 _03687 MPMX20_03688: MPMX20_03688 - hypothetical protein, at 3,887,494 to 3,888,054 _03688 Position (kb) 3883 3884 3885 3886 3887Strain fitness (log2 ratio) -2 -1 0 1 2at 3882.492 kb on + strand, within MPMX20_03684at 3882.564 kb on + strand, within MPMX20_03684at 3882.619 kb on + strand, within MPMX20_03684at 3882.619 kb on + strand, within MPMX20_03684at 3882.624 kb on + strand, within MPMX20_03684at 3882.627 kb on - strand, within MPMX20_03684at 3882.690 kb on + strand, within MPMX20_03684at 3882.699 kb on - strand, within MPMX20_03684at 3882.705 kb on + strand, within MPMX20_03684at 3882.742 kb on + strand, within MPMX20_03684at 3882.749 kb on + strand, within MPMX20_03684at 3882.750 kb on - strand, within MPMX20_03684at 3882.752 kb on - strand, within MPMX20_03684at 3882.752 kb on - strand, within MPMX20_03684at 3882.835 kb on + strand, within MPMX20_03684at 3882.848 kb on - strand, within MPMX20_03684at 3882.857 kb on + strand, within MPMX20_03684at 3882.857 kb on + strand, within MPMX20_03684at 3882.905 kb on - strand, within MPMX20_03684at 3882.988 kb on + strandat 3882.996 kb on - strandat 3883.005 kb on + strandat 3883.184 kb on + strandat 3883.188 kb on + strandat 3883.196 kb on - strandat 3883.207 kb on - strandat 3883.248 kb on + strandat 3883.399 kb on + strandat 3883.399 kb on + strandat 3883.399 kb on + strandat 3883.407 kb on - strandat 3883.407 kb on - strandat 3883.407 kb on - strandat 3883.412 kb on - strandat 3883.440 kb on - strandat 3883.475 kb on - strandat 3883.807 kb on + strand, within MPMX20_03685at 3883.909 kb on + strand, within MPMX20_03685at 3883.975 kb on + strand, within MPMX20_03685at 3884.118 kb on - strand, within MPMX20_03685at 3884.150 kb on - strand, within MPMX20_03685at 3884.264 kb on + strand, within MPMX20_03685at 3884.271 kb on + strand, within MPMX20_03685at 3884.271 kb on + strand, within MPMX20_03685at 3884.272 kb on - strand, within MPMX20_03685at 3884.272 kb on - strand, within MPMX20_03685at 3884.367 kb on + strand, within MPMX20_03685at 3884.375 kb on - strand, within MPMX20_03685at 3884.556 kb on + strand, within MPMX20_03685at 3884.564 kb on - strand, within MPMX20_03685at 3884.615 kb on + strand, within MPMX20_03685at 3884.692 kb on - strand, within MPMX20_03685at 3884.726 kb on + strand, within MPMX20_03685at 3884.759 kb on + strand, within MPMX20_03685at 3884.767 kb on - strand, within MPMX20_03685at 3884.767 kb on - strand, within MPMX20_03685at 3885.123 kb on + strand, within MPMX20_03685at 3885.161 kb on - strand, within MPMX20_03685at 3885.163 kb on + strand, within MPMX20_03685at 3885.362 kb on - strand, within MPMX20_03685at 3885.479 kb on - strand, within MPMX20_03685at 3885.479 kb on - strand, within MPMX20_03685at 3885.489 kb on + strand, within MPMX20_03685at 3885.489 kb on + strand, within MPMX20_03685at 3885.503 kb on + strand, within MPMX20_03685at 3885.571 kb on - strand, within MPMX20_03685at 3885.601 kb on - strand, within MPMX20_03685at 3885.606 kb on + strand, within MPMX20_03685at 3885.714 kb on + strand, within MPMX20_03685at 3885.782 kb on - strand, within MPMX20_03685at 3885.928 kb on - strand, within MPMX20_03685at 3885.982 kb on - strand, within MPMX20_03685at 3886.160 kb on - strand, within MPMX20_03685at 3886.219 kb on - strand, within MPMX20_03685at 3886.404 kb on - strand, within MPMX20_03685at 3886.547 kb on - strandat 3886.814 kb on - strandat 3886.878 kb on - strand, within MPMX20_03686at 3886.897 kb on - strand, within MPMX20_03686at 3886.897 kb on - strand, within MPMX20_03686at 3886.965 kb on - strand, within MPMX20_03686at 3887.116 kb on - strandat 3887.118 kb on + strandat 3887.299 kb on - strand, within MPMX20_03687at 3887.312 kb on + strand, within MPMX20_03687at 3887.344 kb on + strand, within MPMX20_03687at 3887.389 kb on - strand, within MPMX20_03687at 3887.553 kb on + strand, within MPMX20_03688at 3887.561 kb on - strand, within MPMX20_03688at 3887.614 kb on - strand, within MPMX20_03688at 3887.616 kb on + strand, within MPMX20_03688at 3887.641 kb on + strand, within MPMX20_03688at 3887.649 kb on - strand, within MPMX20_03688at 3887.665 kb on + strand, within MPMX20_03688at 3887.665 kb on + strand, within MPMX20_03688at 3887.666 kb on + strand, within MPMX20_03688at 3887.666 kb on + strand, within MPMX20_03688at 3887.709 kb on - strand, within MPMX20_03688at 3887.735 kb on - strand, within MPMX20_03688at 3887.766 kb on - strand, within MPMX20_03688

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,882,492 + MPMX20_03684 0.73 -1.0
3,882,564 + MPMX20_03684 0.76 -0.1
3,882,619 + MPMX20_03684 0.78 -0.0
3,882,619 + MPMX20_03684 0.78 +0.3
3,882,624 + MPMX20_03684 0.78 +0.4
3,882,627 - MPMX20_03684 0.78 -0.5
3,882,690 + MPMX20_03684 0.80 -0.5
3,882,699 - MPMX20_03684 0.80 -1.3
3,882,705 + MPMX20_03684 0.81 -0.1
3,882,742 + MPMX20_03684 0.82 +0.2
3,882,749 + MPMX20_03684 0.82 -1.4
3,882,750 - MPMX20_03684 0.82 +0.3
3,882,752 - MPMX20_03684 0.82 +0.3
3,882,752 - MPMX20_03684 0.82 -1.1
3,882,835 + MPMX20_03684 0.85 +0.6
3,882,848 - MPMX20_03684 0.86 +2.0
3,882,857 + MPMX20_03684 0.86 -0.8
3,882,857 + MPMX20_03684 0.86 -0.8
3,882,905 - MPMX20_03684 0.88 +0.1
3,882,988 + +0.9
3,882,996 - +0.9
3,883,005 + -1.2
3,883,184 + +0.6
3,883,188 + +0.9
3,883,196 - -0.3
3,883,207 - +0.5
3,883,248 + -0.0
3,883,399 + +0.2
3,883,399 + -0.6
3,883,399 + -0.1
3,883,407 - +0.2
3,883,407 - +0.4
3,883,407 - +0.1
3,883,412 - +0.4
3,883,440 - -0.3
3,883,475 - -0.1
3,883,807 + MPMX20_03685 0.12 -1.1
3,883,909 + MPMX20_03685 0.15 -1.9
3,883,975 + MPMX20_03685 0.17 -1.1
3,884,118 - MPMX20_03685 0.21 -1.1
3,884,150 - MPMX20_03685 0.22 -0.7
3,884,264 + MPMX20_03685 0.26 -0.7
3,884,271 + MPMX20_03685 0.26 +0.9
3,884,271 + MPMX20_03685 0.26 -1.7
3,884,272 - MPMX20_03685 0.26 -1.7
3,884,272 - MPMX20_03685 0.26 -1.4
3,884,367 + MPMX20_03685 0.29 -2.1
3,884,375 - MPMX20_03685 0.29 -1.4
3,884,556 + MPMX20_03685 0.34 -0.7
3,884,564 - MPMX20_03685 0.34 -0.7
3,884,615 + MPMX20_03685 0.36 -1.7
3,884,692 - MPMX20_03685 0.38 -2.6
3,884,726 + MPMX20_03685 0.39 -2.3
3,884,759 + MPMX20_03685 0.40 -0.7
3,884,767 - MPMX20_03685 0.40 -2.1
3,884,767 - MPMX20_03685 0.40 -2.1
3,885,123 + MPMX20_03685 0.51 -2.3
3,885,161 - MPMX20_03685 0.52 -1.9
3,885,163 + MPMX20_03685 0.52 -2.1
3,885,362 - MPMX20_03685 0.58 -0.7
3,885,479 - MPMX20_03685 0.62 -1.4
3,885,479 - MPMX20_03685 0.62 +0.5
3,885,489 + MPMX20_03685 0.62 -1.4
3,885,489 + MPMX20_03685 0.62 +0.9
3,885,503 + MPMX20_03685 0.62 +0.9
3,885,571 - MPMX20_03685 0.64 -1.1
3,885,601 - MPMX20_03685 0.65 -1.9
3,885,606 + MPMX20_03685 0.65 -1.7
3,885,714 + MPMX20_03685 0.69 -1.9
3,885,782 - MPMX20_03685 0.71 -2.6
3,885,928 - MPMX20_03685 0.75 -1.1
3,885,982 - MPMX20_03685 0.76 -1.1
3,886,160 - MPMX20_03685 0.82 -0.7
3,886,219 - MPMX20_03685 0.83 +0.9
3,886,404 - MPMX20_03685 0.89 -1.1
3,886,547 - -1.7
3,886,814 - -0.3
3,886,878 - MPMX20_03686 0.28 -0.3
3,886,897 - MPMX20_03686 0.34 -2.1
3,886,897 - MPMX20_03686 0.34 -0.2
3,886,965 - MPMX20_03686 0.55 +0.1
3,887,116 - +0.0
3,887,118 + +0.4
3,887,299 - MPMX20_03687 0.50 +0.6
3,887,312 + MPMX20_03687 0.54 -1.7
3,887,344 + MPMX20_03687 0.62 +0.3
3,887,389 - MPMX20_03687 0.73 -0.8
3,887,553 + MPMX20_03688 0.11 +0.9
3,887,561 - MPMX20_03688 0.12 +0.3
3,887,614 - MPMX20_03688 0.21 +0.6
3,887,616 + MPMX20_03688 0.22 +0.5
3,887,641 + MPMX20_03688 0.26 +0.2
3,887,649 - MPMX20_03688 0.28 +0.3
3,887,665 + MPMX20_03688 0.30 -0.0
3,887,665 + MPMX20_03688 0.30 +0.7
3,887,666 + MPMX20_03688 0.31 +0.1
3,887,666 + MPMX20_03688 0.31 +1.4
3,887,709 - MPMX20_03688 0.38 -0.8
3,887,735 - MPMX20_03688 0.43 -0.4
3,887,766 - MPMX20_03688 0.48 +0.4

Or see this region's nucleotide sequence