Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03580

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03578 and MPMX20_03579 are separated by 131 nucleotidesMPMX20_03579 and MPMX20_03580 are separated by 68 nucleotidesMPMX20_03580 and MPMX20_03581 are separated by 89 nucleotidesMPMX20_03581 and MPMX20_03582 are separated by 130 nucleotides MPMX20_03578: MPMX20_03578 - Alanine--tRNA ligase, at 3,766,862 to 3,769,489 _03578 MPMX20_03579: MPMX20_03579 - Regulatory protein RecX, at 3,769,621 to 3,770,121 _03579 MPMX20_03580: MPMX20_03580 - Protein RecA, at 3,770,190 to 3,771,248 _03580 MPMX20_03581: MPMX20_03581 - Nicotinamide-nucleotide amidohydrolase PncC, at 3,771,338 to 3,771,835 _03581 MPMX20_03582: MPMX20_03582 - Manganese-binding lipoprotein MntA, at 3,771,966 to 3,772,844 _03582 Position (kb) 3770 3771 3772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3769.551 kb on - strandat 3769.618 kb on + strandat 3769.626 kb on - strandat 3769.720 kb on + strand, within MPMX20_03579at 3769.726 kb on + strand, within MPMX20_03579at 3769.734 kb on - strand, within MPMX20_03579at 3769.735 kb on - strand, within MPMX20_03579at 3769.748 kb on + strand, within MPMX20_03579at 3769.762 kb on - strand, within MPMX20_03579at 3769.831 kb on + strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.951 kb on + strand, within MPMX20_03579at 3769.959 kb on - strand, within MPMX20_03579at 3769.975 kb on + strand, within MPMX20_03579at 3769.980 kb on + strand, within MPMX20_03579at 3770.016 kb on - strand, within MPMX20_03579at 3770.029 kb on + strand, within MPMX20_03579at 3770.037 kb on - strand, within MPMX20_03579at 3770.067 kb on + strand, within MPMX20_03579at 3770.067 kb on + strand, within MPMX20_03579at 3770.091 kb on + strandat 3770.091 kb on + strandat 3770.167 kb on + strandat 3770.229 kb on - strandat 3770.338 kb on + strand, within MPMX20_03580at 3770.338 kb on + strand, within MPMX20_03580at 3770.346 kb on - strand, within MPMX20_03580at 3770.417 kb on + strand, within MPMX20_03580at 3770.447 kb on - strand, within MPMX20_03580at 3770.546 kb on - strand, within MPMX20_03580at 3770.674 kb on + strand, within MPMX20_03580at 3770.686 kb on + strand, within MPMX20_03580at 3770.686 kb on + strand, within MPMX20_03580at 3770.686 kb on + strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.696 kb on + strand, within MPMX20_03580at 3770.696 kb on + strand, within MPMX20_03580at 3770.828 kb on + strand, within MPMX20_03580at 3770.855 kb on - strand, within MPMX20_03580at 3770.891 kb on + strand, within MPMX20_03580at 3770.896 kb on + strand, within MPMX20_03580at 3770.896 kb on + strand, within MPMX20_03580at 3770.899 kb on + strand, within MPMX20_03580at 3770.899 kb on - strand, within MPMX20_03580at 3770.927 kb on + strand, within MPMX20_03580at 3770.979 kb on + strand, within MPMX20_03580at 3770.979 kb on + strand, within MPMX20_03580at 3770.994 kb on - strand, within MPMX20_03580at 3771.004 kb on + strand, within MPMX20_03580at 3771.150 kb on + strandat 3771.150 kb on + strandat 3771.158 kb on - strandat 3771.158 kb on - strandat 3771.169 kb on + strandat 3771.176 kb on - strandat 3771.200 kb on + strandat 3771.201 kb on + strandat 3771.214 kb on - strandat 3771.288 kb on - strandat 3771.453 kb on - strand, within MPMX20_03581at 3771.458 kb on - strand, within MPMX20_03581at 3771.504 kb on - strand, within MPMX20_03581at 3771.511 kb on - strand, within MPMX20_03581at 3771.614 kb on - strand, within MPMX20_03581at 3771.730 kb on + strand, within MPMX20_03581at 3771.744 kb on + strand, within MPMX20_03581at 3771.744 kb on + strand, within MPMX20_03581at 3771.752 kb on - strand, within MPMX20_03581at 3771.752 kb on - strand, within MPMX20_03581at 3771.752 kb on - strand, within MPMX20_03581at 3771.761 kb on + strand, within MPMX20_03581at 3771.761 kb on + strand, within MPMX20_03581at 3771.761 kb on + strand, within MPMX20_03581at 3771.761 kb on + strand, within MPMX20_03581at 3771.769 kb on - strand, within MPMX20_03581at 3771.789 kb on - strandat 3771.794 kb on + strandat 3771.794 kb on + strandat 3771.795 kb on - strandat 3771.804 kb on + strandat 3771.841 kb on + strandat 3771.849 kb on - strandat 3771.849 kb on - strandat 3771.865 kb on + strandat 3771.870 kb on + strandat 3771.916 kb on - strandat 3771.938 kb on + strandat 3771.995 kb on - strandat 3772.009 kb on + strandat 3772.010 kb on + strandat 3772.010 kb on + strandat 3772.010 kb on + strandat 3772.018 kb on - strandat 3772.021 kb on + strandat 3772.043 kb on - strandat 3772.043 kb on - strandat 3772.069 kb on + strand, within MPMX20_03582at 3772.069 kb on + strand, within MPMX20_03582at 3772.077 kb on - strand, within MPMX20_03582at 3772.167 kb on - strand, within MPMX20_03582at 3772.185 kb on + strand, within MPMX20_03582at 3772.190 kb on + strand, within MPMX20_03582at 3772.193 kb on - strand, within MPMX20_03582at 3772.193 kb on - strand, within MPMX20_03582at 3772.221 kb on + strand, within MPMX20_03582at 3772.221 kb on + strand, within MPMX20_03582at 3772.224 kb on - strand, within MPMX20_03582at 3772.229 kb on - strand, within MPMX20_03582at 3772.229 kb on - strand, within MPMX20_03582at 3772.229 kb on - strand, within MPMX20_03582at 3772.229 kb on - strand, within MPMX20_03582

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,769,551 - -0.9
3,769,618 + +0.5
3,769,626 - +0.6
3,769,720 + MPMX20_03579 0.20 +0.6
3,769,726 + MPMX20_03579 0.21 -0.5
3,769,734 - MPMX20_03579 0.23 +0.1
3,769,735 - MPMX20_03579 0.23 +1.1
3,769,748 + MPMX20_03579 0.25 +0.3
3,769,762 - MPMX20_03579 0.28 +0.5
3,769,831 + MPMX20_03579 0.42 -0.9
3,769,866 - MPMX20_03579 0.49 -1.1
3,769,866 - MPMX20_03579 0.49 -1.2
3,769,866 - MPMX20_03579 0.49 +0.1
3,769,866 - MPMX20_03579 0.49 +0.9
3,769,866 - MPMX20_03579 0.49 +0.2
3,769,951 + MPMX20_03579 0.66 -1.2
3,769,959 - MPMX20_03579 0.67 +0.9
3,769,975 + MPMX20_03579 0.71 -2.5
3,769,980 + MPMX20_03579 0.72 -0.5
3,770,016 - MPMX20_03579 0.79 -1.8
3,770,029 + MPMX20_03579 0.81 -0.5
3,770,037 - MPMX20_03579 0.83 +0.0
3,770,067 + MPMX20_03579 0.89 -0.3
3,770,067 + MPMX20_03579 0.89 -0.5
3,770,091 + +0.2
3,770,091 + +0.4
3,770,167 + +0.1
3,770,229 - -0.9
3,770,338 + MPMX20_03580 0.14 -1.3
3,770,338 + MPMX20_03580 0.14 -2.1
3,770,346 - MPMX20_03580 0.15 -1.7
3,770,417 + MPMX20_03580 0.21 -0.5
3,770,447 - MPMX20_03580 0.24 -0.9
3,770,546 - MPMX20_03580 0.34 +1.5
3,770,674 + MPMX20_03580 0.46 +0.9
3,770,686 + MPMX20_03580 0.47 -1.7
3,770,686 + MPMX20_03580 0.47 -3.2
3,770,686 + MPMX20_03580 0.47 +0.9
3,770,694 - MPMX20_03580 0.48 -0.1
3,770,694 - MPMX20_03580 0.48 -1.9
3,770,694 - MPMX20_03580 0.48 +0.5
3,770,694 - MPMX20_03580 0.48 +0.4
3,770,694 - MPMX20_03580 0.48 +0.0
3,770,696 + MPMX20_03580 0.48 -1.1
3,770,696 + MPMX20_03580 0.48 -2.1
3,770,828 + MPMX20_03580 0.60 -0.7
3,770,855 - MPMX20_03580 0.63 +0.5
3,770,891 + MPMX20_03580 0.66 -0.9
3,770,896 + MPMX20_03580 0.67 -2.3
3,770,896 + MPMX20_03580 0.67 -2.2
3,770,899 + MPMX20_03580 0.67 -1.6
3,770,899 - MPMX20_03580 0.67 -2.5
3,770,927 + MPMX20_03580 0.70 -1.7
3,770,979 + MPMX20_03580 0.75 -1.7
3,770,979 + MPMX20_03580 0.75 -2.5
3,770,994 - MPMX20_03580 0.76 -2.9
3,771,004 + MPMX20_03580 0.77 -1.0
3,771,150 + -0.4
3,771,150 + -0.7
3,771,158 - -2.6
3,771,158 - -0.9
3,771,169 + +0.3
3,771,176 - -1.6
3,771,200 + +1.9
3,771,201 + -0.7
3,771,214 - -2.5
3,771,288 - +0.5
3,771,453 - MPMX20_03581 0.23 +0.4
3,771,458 - MPMX20_03581 0.24 +0.3
3,771,504 - MPMX20_03581 0.33 +0.9
3,771,511 - MPMX20_03581 0.35 -1.4
3,771,614 - MPMX20_03581 0.55 -0.5
3,771,730 + MPMX20_03581 0.79 +0.7
3,771,744 + MPMX20_03581 0.82 +0.0
3,771,744 + MPMX20_03581 0.82 -0.9
3,771,752 - MPMX20_03581 0.83 +0.6
3,771,752 - MPMX20_03581 0.83 +0.2
3,771,752 - MPMX20_03581 0.83 -0.3
3,771,761 + MPMX20_03581 0.85 +0.0
3,771,761 + MPMX20_03581 0.85 +0.1
3,771,761 + MPMX20_03581 0.85 +0.9
3,771,761 + MPMX20_03581 0.85 -0.7
3,771,769 - MPMX20_03581 0.87 +0.1
3,771,789 - -1.2
3,771,794 + -0.2
3,771,794 + +0.2
3,771,795 - +0.2
3,771,804 + +0.3
3,771,841 + -0.3
3,771,849 - +0.9
3,771,849 - +0.9
3,771,865 + +0.6
3,771,870 + +0.1
3,771,916 - +0.4
3,771,938 + -0.0
3,771,995 - -0.2
3,772,009 + -0.0
3,772,010 + -1.1
3,772,010 + -2.6
3,772,010 + -0.7
3,772,018 - -0.0
3,772,021 + -0.5
3,772,043 - +0.1
3,772,043 - -0.4
3,772,069 + MPMX20_03582 0.12 +0.1
3,772,069 + MPMX20_03582 0.12 +0.6
3,772,077 - MPMX20_03582 0.13 -0.9
3,772,167 - MPMX20_03582 0.23 -0.4
3,772,185 + MPMX20_03582 0.25 +0.3
3,772,190 + MPMX20_03582 0.25 +0.5
3,772,193 - MPMX20_03582 0.26 +0.9
3,772,193 - MPMX20_03582 0.26 +0.2
3,772,221 + MPMX20_03582 0.29 -0.7
3,772,221 + MPMX20_03582 0.29 +1.1
3,772,224 - MPMX20_03582 0.29 +0.2
3,772,229 - MPMX20_03582 0.30 +0.1
3,772,229 - MPMX20_03582 0.30 +0.9
3,772,229 - MPMX20_03582 0.30 +0.9
3,772,229 - MPMX20_03582 0.30 +0.4

Or see this region's nucleotide sequence