Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03425 and MPMX20_03426 are separated by 579 nucleotides MPMX20_03426 and MPMX20_03427 are separated by 267 nucleotides
MPMX20_03425: MPMX20_03425 - Sensor histidine kinase QseE, at 3,610,033 to 3,611,415
_03425
MPMX20_03426: MPMX20_03426 - Phosphoribosylformylglycinamidine synthase, at 3,611,995 to 3,615,882
_03426
MPMX20_03427: MPMX20_03427 - Membrane-bound lytic murein transglycosylase F, at 3,616,150 to 3,617,700
_03427
Position (kb)
3611
3612
3613
3614
3615
3616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3610.995 kb on - strand, within MPMX20_03425 at 3611.014 kb on - strand, within MPMX20_03425 at 3611.077 kb on + strand, within MPMX20_03425 at 3611.162 kb on - strand, within MPMX20_03425 at 3611.169 kb on + strand, within MPMX20_03425 at 3611.270 kb on + strand, within MPMX20_03425 at 3611.270 kb on + strand, within MPMX20_03425 at 3611.320 kb on + strand at 3611.381 kb on + strand at 3611.419 kb on + strand at 3611.489 kb on - strand at 3611.527 kb on - strand at 3611.527 kb on - strand at 3611.616 kb on - strand at 3612.065 kb on + strand at 3612.066 kb on + strand at 3612.091 kb on - strand at 3612.147 kb on - strand at 3612.169 kb on + strand at 3612.256 kb on + strand at 3612.261 kb on - strand at 3612.269 kb on - strand at 3612.352 kb on + strand at 3612.461 kb on - strand, within MPMX20_03426 at 3612.544 kb on + strand, within MPMX20_03426 at 3612.552 kb on + strand, within MPMX20_03426 at 3612.552 kb on - strand, within MPMX20_03426 at 3612.568 kb on + strand, within MPMX20_03426 at 3612.571 kb on - strand, within MPMX20_03426 at 3612.571 kb on - strand, within MPMX20_03426 at 3612.573 kb on + strand, within MPMX20_03426 at 3612.576 kb on - strand, within MPMX20_03426 at 3612.586 kb on - strand, within MPMX20_03426 at 3612.641 kb on - strand, within MPMX20_03426 at 3612.700 kb on + strand, within MPMX20_03426 at 3612.708 kb on - strand, within MPMX20_03426 at 3612.820 kb on - strand, within MPMX20_03426 at 3612.834 kb on + strand, within MPMX20_03426 at 3612.834 kb on + strand, within MPMX20_03426 at 3612.882 kb on + strand, within MPMX20_03426 at 3612.950 kb on - strand, within MPMX20_03426 at 3612.950 kb on - strand, within MPMX20_03426 at 3612.950 kb on - strand, within MPMX20_03426 at 3613.010 kb on + strand, within MPMX20_03426 at 3613.010 kb on + strand, within MPMX20_03426 at 3613.018 kb on - strand, within MPMX20_03426 at 3613.018 kb on - strand, within MPMX20_03426 at 3613.068 kb on - strand, within MPMX20_03426 at 3613.115 kb on + strand, within MPMX20_03426 at 3613.193 kb on + strand, within MPMX20_03426 at 3613.257 kb on + strand, within MPMX20_03426 at 3613.267 kb on + strand, within MPMX20_03426 at 3613.267 kb on + strand, within MPMX20_03426 at 3613.272 kb on + strand, within MPMX20_03426 at 3613.275 kb on - strand, within MPMX20_03426 at 3613.289 kb on + strand, within MPMX20_03426 at 3613.340 kb on + strand, within MPMX20_03426 at 3613.348 kb on - strand, within MPMX20_03426 at 3613.348 kb on - strand, within MPMX20_03426 at 3613.348 kb on - strand, within MPMX20_03426 at 3613.350 kb on + strand, within MPMX20_03426 at 3613.373 kb on + strand, within MPMX20_03426 at 3613.390 kb on - strand, within MPMX20_03426 at 3613.462 kb on - strand, within MPMX20_03426 at 3613.491 kb on + strand, within MPMX20_03426 at 3613.491 kb on + strand, within MPMX20_03426 at 3613.496 kb on - strand, within MPMX20_03426 at 3613.499 kb on - strand, within MPMX20_03426 at 3613.499 kb on - strand, within MPMX20_03426 at 3613.578 kb on - strand, within MPMX20_03426 at 3613.599 kb on - strand, within MPMX20_03426 at 3613.624 kb on - strand, within MPMX20_03426 at 3613.770 kb on - strand, within MPMX20_03426 at 3613.792 kb on - strand, within MPMX20_03426 at 3613.827 kb on - strand, within MPMX20_03426 at 3613.863 kb on + strand, within MPMX20_03426 at 3613.890 kb on + strand, within MPMX20_03426 at 3613.905 kb on + strand, within MPMX20_03426 at 3613.957 kb on + strand, within MPMX20_03426 at 3614.029 kb on - strand, within MPMX20_03426 at 3614.304 kb on + strand, within MPMX20_03426 at 3614.312 kb on - strand, within MPMX20_03426 at 3614.351 kb on + strand, within MPMX20_03426 at 3614.351 kb on + strand, within MPMX20_03426 at 3614.351 kb on + strand, within MPMX20_03426 at 3614.353 kb on - strand, within MPMX20_03426 at 3614.359 kb on - strand, within MPMX20_03426 at 3614.359 kb on - strand, within MPMX20_03426 at 3614.359 kb on - strand, within MPMX20_03426 at 3614.359 kb on - strand, within MPMX20_03426 at 3614.462 kb on - strand, within MPMX20_03426 at 3614.513 kb on - strand, within MPMX20_03426 at 3614.618 kb on + strand, within MPMX20_03426 at 3614.673 kb on + strand, within MPMX20_03426 at 3614.834 kb on + strand, within MPMX20_03426 at 3615.078 kb on - strand, within MPMX20_03426 at 3615.081 kb on + strand, within MPMX20_03426 at 3615.081 kb on + strand, within MPMX20_03426 at 3615.081 kb on + strand, within MPMX20_03426 at 3615.081 kb on + strand, within MPMX20_03426 at 3615.084 kb on - strand, within MPMX20_03426 at 3615.089 kb on - strand, within MPMX20_03426 at 3615.089 kb on - strand, within MPMX20_03426 at 3615.089 kb on - strand, within MPMX20_03426 at 3615.089 kb on - strand, within MPMX20_03426 at 3615.097 kb on - strand, within MPMX20_03426 at 3615.194 kb on - strand, within MPMX20_03426 at 3615.197 kb on - strand, within MPMX20_03426 at 3615.237 kb on + strand, within MPMX20_03426 at 3615.237 kb on + strand, within MPMX20_03426 at 3615.242 kb on + strand, within MPMX20_03426 at 3615.250 kb on - strand, within MPMX20_03426 at 3615.408 kb on + strand, within MPMX20_03426 at 3615.412 kb on - strand, within MPMX20_03426 at 3615.487 kb on + strand, within MPMX20_03426 at 3615.523 kb on + strand at 3615.523 kb on + strand at 3615.523 kb on + strand at 3615.523 kb on + strand at 3615.528 kb on + strand at 3615.528 kb on + strand at 3615.528 kb on + strand at 3615.528 kb on + strand at 3615.528 kb on + strand at 3615.528 kb on + strand at 3615.536 kb on - strand at 3615.536 kb on - strand at 3615.536 kb on - strand at 3615.536 kb on - strand at 3615.545 kb on + strand at 3615.675 kb on + strand at 3615.675 kb on + strand at 3615.675 kb on + strand at 3615.683 kb on - strand at 3615.690 kb on + strand at 3615.693 kb on - strand at 3615.701 kb on + strand at 3615.739 kb on + strand at 3615.747 kb on - strand at 3615.749 kb on + strand at 3615.885 kb on + strand at 3616.113 kb on - strand at 3616.113 kb on - strand at 3616.213 kb on - strand at 3616.251 kb on - strand at 3616.289 kb on + strand at 3616.377 kb on - strand, within MPMX20_03427 at 3616.379 kb on + strand, within MPMX20_03427 at 3616.443 kb on - strand, within MPMX20_03427 at 3616.448 kb on - strand, within MPMX20_03427 at 3616.453 kb on + strand, within MPMX20_03427 at 3616.471 kb on + strand, within MPMX20_03427 at 3616.477 kb on + strand, within MPMX20_03427 at 3616.485 kb on - strand, within MPMX20_03427 at 3616.485 kb on - strand, within MPMX20_03427 at 3616.562 kb on - strand, within MPMX20_03427 at 3616.600 kb on + strand, within MPMX20_03427 at 3616.621 kb on - strand, within MPMX20_03427 at 3616.654 kb on - strand, within MPMX20_03427 at 3616.674 kb on + strand, within MPMX20_03427 at 3616.759 kb on - strand, within MPMX20_03427 at 3616.772 kb on + strand, within MPMX20_03427 at 3616.841 kb on + strand, within MPMX20_03427 at 3616.849 kb on - strand, within MPMX20_03427 at 3616.849 kb on - strand, within MPMX20_03427 at 3616.859 kb on - strand, within MPMX20_03427 at 3616.860 kb on + strand, within MPMX20_03427 at 3616.862 kb on + strand, within MPMX20_03427
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,610,995 - MPMX20_03425 0.70 +0.9 3,611,014 - MPMX20_03425 0.71 +0.2 3,611,077 + MPMX20_03425 0.75 +1.2 3,611,162 - MPMX20_03425 0.82 -0.2 3,611,169 + MPMX20_03425 0.82 +0.5 3,611,270 + MPMX20_03425 0.89 +0.9 3,611,270 + MPMX20_03425 0.89 +0.6 3,611,320 + -0.1 3,611,381 + -0.4 3,611,419 + +0.5 3,611,489 - -0.4 3,611,527 - +0.0 3,611,527 - +0.4 3,611,616 - +0.1 3,612,065 + -0.7 3,612,066 + -1.8 3,612,091 - -0.3 3,612,147 - -2.7 3,612,169 + -0.9 3,612,256 + -0.5 3,612,261 - -0.5 3,612,269 - -2.5 3,612,352 + -0.6 3,612,461 - MPMX20_03426 0.12 -3.6 3,612,544 + MPMX20_03426 0.14 -0.7 3,612,552 + MPMX20_03426 0.14 -0.9 3,612,552 - MPMX20_03426 0.14 -1.3 3,612,568 + MPMX20_03426 0.15 -1.6 3,612,571 - MPMX20_03426 0.15 -1.2 3,612,571 - MPMX20_03426 0.15 -1.2 3,612,573 + MPMX20_03426 0.15 +1.1 3,612,576 - MPMX20_03426 0.15 -1.7 3,612,586 - MPMX20_03426 0.15 -0.4 3,612,641 - MPMX20_03426 0.17 +0.6 3,612,700 + MPMX20_03426 0.18 -1.5 3,612,708 - MPMX20_03426 0.18 -0.7 3,612,820 - MPMX20_03426 0.21 -0.5 3,612,834 + MPMX20_03426 0.22 -0.6 3,612,834 + MPMX20_03426 0.22 -0.8 3,612,882 + MPMX20_03426 0.23 -1.2 3,612,950 - MPMX20_03426 0.25 -0.9 3,612,950 - MPMX20_03426 0.25 -1.2 3,612,950 - MPMX20_03426 0.25 -1.3 3,613,010 + MPMX20_03426 0.26 -1.8 3,613,010 + MPMX20_03426 0.26 -1.0 3,613,018 - MPMX20_03426 0.26 -1.6 3,613,018 - MPMX20_03426 0.26 -1.2 3,613,068 - MPMX20_03426 0.28 -0.4 3,613,115 + MPMX20_03426 0.29 -0.1 3,613,193 + MPMX20_03426 0.31 -1.1 3,613,257 + MPMX20_03426 0.32 -1.1 3,613,267 + MPMX20_03426 0.33 -1.1 3,613,267 + MPMX20_03426 0.33 -1.6 3,613,272 + MPMX20_03426 0.33 -1.1 3,613,275 - MPMX20_03426 0.33 +0.9 3,613,289 + MPMX20_03426 0.33 -1.0 3,613,340 + MPMX20_03426 0.35 +0.9 3,613,348 - MPMX20_03426 0.35 +1.3 3,613,348 - MPMX20_03426 0.35 -2.2 3,613,348 - MPMX20_03426 0.35 +0.2 3,613,350 + MPMX20_03426 0.35 -1.1 3,613,373 + MPMX20_03426 0.35 -0.3 3,613,390 - MPMX20_03426 0.36 -0.1 3,613,462 - MPMX20_03426 0.38 -0.2 3,613,491 + MPMX20_03426 0.38 -0.4 3,613,491 + MPMX20_03426 0.38 -1.9 3,613,496 - MPMX20_03426 0.39 +1.3 3,613,499 - MPMX20_03426 0.39 -0.7 3,613,499 - MPMX20_03426 0.39 -0.5 3,613,578 - MPMX20_03426 0.41 -0.9 3,613,599 - MPMX20_03426 0.41 -1.5 3,613,624 - MPMX20_03426 0.42 -1.1 3,613,770 - MPMX20_03426 0.46 +0.9 3,613,792 - MPMX20_03426 0.46 -0.5 3,613,827 - MPMX20_03426 0.47 -0.3 3,613,863 + MPMX20_03426 0.48 -2.1 3,613,890 + MPMX20_03426 0.49 -2.2 3,613,905 + MPMX20_03426 0.49 -2.1 3,613,957 + MPMX20_03426 0.50 -0.1 3,614,029 - MPMX20_03426 0.52 +1.2 3,614,304 + MPMX20_03426 0.59 +0.1 3,614,312 - MPMX20_03426 0.60 -0.5 3,614,351 + MPMX20_03426 0.61 -0.9 3,614,351 + MPMX20_03426 0.61 -0.1 3,614,351 + MPMX20_03426 0.61 -0.3 3,614,353 - MPMX20_03426 0.61 -1.7 3,614,359 - MPMX20_03426 0.61 -2.1 3,614,359 - MPMX20_03426 0.61 -1.0 3,614,359 - MPMX20_03426 0.61 +0.1 3,614,359 - MPMX20_03426 0.61 -0.8 3,614,462 - MPMX20_03426 0.63 +0.7 3,614,513 - MPMX20_03426 0.65 -0.8 3,614,618 + MPMX20_03426 0.67 -0.8 3,614,673 + MPMX20_03426 0.69 -1.6 3,614,834 + MPMX20_03426 0.73 -2.1 3,615,078 - MPMX20_03426 0.79 -0.7 3,615,081 + MPMX20_03426 0.79 -2.5 3,615,081 + MPMX20_03426 0.79 +0.3 3,615,081 + MPMX20_03426 0.79 -2.9 3,615,081 + MPMX20_03426 0.79 -1.1 3,615,084 - MPMX20_03426 0.79 -0.5 3,615,089 - MPMX20_03426 0.80 -0.6 3,615,089 - MPMX20_03426 0.80 -0.3 3,615,089 - MPMX20_03426 0.80 +0.3 3,615,089 - MPMX20_03426 0.80 -0.9 3,615,097 - MPMX20_03426 0.80 +0.3 3,615,194 - MPMX20_03426 0.82 -2.3 3,615,197 - MPMX20_03426 0.82 -1.7 3,615,237 + MPMX20_03426 0.83 -1.0 3,615,237 + MPMX20_03426 0.83 -1.7 3,615,242 + MPMX20_03426 0.84 -2.1 3,615,250 - MPMX20_03426 0.84 -1.8 3,615,408 + MPMX20_03426 0.88 -2.5 3,615,412 - MPMX20_03426 0.88 -1.9 3,615,487 + MPMX20_03426 0.90 -0.9 3,615,523 + -0.9 3,615,523 + +0.2 3,615,523 + +0.9 3,615,523 + -0.2 3,615,528 + -0.7 3,615,528 + -1.1 3,615,528 + -1.3 3,615,528 + -1.5 3,615,528 + -0.3 3,615,528 + -0.6 3,615,536 - -0.9 3,615,536 - -1.2 3,615,536 - -0.9 3,615,536 - -2.3 3,615,545 + -1.1 3,615,675 + -1.4 3,615,675 + -0.9 3,615,675 + -1.0 3,615,683 - -0.9 3,615,690 + -0.8 3,615,693 - -0.7 3,615,701 + -0.6 3,615,739 + -1.7 3,615,747 - -0.1 3,615,749 + -0.3 3,615,885 + -0.4 3,616,113 - -0.4 3,616,113 - +1.1 3,616,213 - -1.2 3,616,251 - -0.3 3,616,289 + +0.9 3,616,377 - MPMX20_03427 0.15 +0.7 3,616,379 + MPMX20_03427 0.15 -1.1 3,616,443 - MPMX20_03427 0.19 +0.9 3,616,448 - MPMX20_03427 0.19 -0.5 3,616,453 + MPMX20_03427 0.20 -0.2 3,616,471 + MPMX20_03427 0.21 +0.3 3,616,477 + MPMX20_03427 0.21 +0.1 3,616,485 - MPMX20_03427 0.22 +0.1 3,616,485 - MPMX20_03427 0.22 -1.9 3,616,562 - MPMX20_03427 0.27 -0.5 3,616,600 + MPMX20_03427 0.29 +0.1 3,616,621 - MPMX20_03427 0.30 -0.6 3,616,654 - MPMX20_03427 0.32 -0.7 3,616,674 + MPMX20_03427 0.34 +0.6 3,616,759 - MPMX20_03427 0.39 +1.4 3,616,772 + MPMX20_03427 0.40 +2.4 3,616,841 + MPMX20_03427 0.45 +0.5 3,616,849 - MPMX20_03427 0.45 -1.5 3,616,849 - MPMX20_03427 0.45 +0.2 3,616,859 - MPMX20_03427 0.46 -2.1 3,616,860 + MPMX20_03427 0.46 -1.2 3,616,862 + MPMX20_03427 0.46 +0.4
Or see this region's nucleotide sequence