Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03426

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03425 and MPMX20_03426 are separated by 579 nucleotidesMPMX20_03426 and MPMX20_03427 are separated by 267 nucleotides MPMX20_03425: MPMX20_03425 - Sensor histidine kinase QseE, at 3,610,033 to 3,611,415 _03425 MPMX20_03426: MPMX20_03426 - Phosphoribosylformylglycinamidine synthase, at 3,611,995 to 3,615,882 _03426 MPMX20_03427: MPMX20_03427 - Membrane-bound lytic murein transglycosylase F, at 3,616,150 to 3,617,700 _03427 Position (kb) 3611 3612 3613 3614 3615 3616Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3610.995 kb on - strand, within MPMX20_03425at 3611.014 kb on - strand, within MPMX20_03425at 3611.077 kb on + strand, within MPMX20_03425at 3611.162 kb on - strand, within MPMX20_03425at 3611.169 kb on + strand, within MPMX20_03425at 3611.270 kb on + strand, within MPMX20_03425at 3611.270 kb on + strand, within MPMX20_03425at 3611.320 kb on + strandat 3611.381 kb on + strandat 3611.419 kb on + strandat 3611.489 kb on - strandat 3611.527 kb on - strandat 3611.527 kb on - strandat 3611.616 kb on - strandat 3612.065 kb on + strandat 3612.066 kb on + strandat 3612.091 kb on - strandat 3612.147 kb on - strandat 3612.169 kb on + strandat 3612.256 kb on + strandat 3612.261 kb on - strandat 3612.269 kb on - strandat 3612.352 kb on + strandat 3612.461 kb on - strand, within MPMX20_03426at 3612.544 kb on + strand, within MPMX20_03426at 3612.552 kb on + strand, within MPMX20_03426at 3612.552 kb on - strand, within MPMX20_03426at 3612.568 kb on + strand, within MPMX20_03426at 3612.571 kb on - strand, within MPMX20_03426at 3612.571 kb on - strand, within MPMX20_03426at 3612.573 kb on + strand, within MPMX20_03426at 3612.576 kb on - strand, within MPMX20_03426at 3612.586 kb on - strand, within MPMX20_03426at 3612.641 kb on - strand, within MPMX20_03426at 3612.700 kb on + strand, within MPMX20_03426at 3612.708 kb on - strand, within MPMX20_03426at 3612.820 kb on - strand, within MPMX20_03426at 3612.834 kb on + strand, within MPMX20_03426at 3612.834 kb on + strand, within MPMX20_03426at 3612.882 kb on + strand, within MPMX20_03426at 3612.950 kb on - strand, within MPMX20_03426at 3612.950 kb on - strand, within MPMX20_03426at 3612.950 kb on - strand, within MPMX20_03426at 3613.010 kb on + strand, within MPMX20_03426at 3613.010 kb on + strand, within MPMX20_03426at 3613.018 kb on - strand, within MPMX20_03426at 3613.018 kb on - strand, within MPMX20_03426at 3613.068 kb on - strand, within MPMX20_03426at 3613.115 kb on + strand, within MPMX20_03426at 3613.193 kb on + strand, within MPMX20_03426at 3613.257 kb on + strand, within MPMX20_03426at 3613.267 kb on + strand, within MPMX20_03426at 3613.267 kb on + strand, within MPMX20_03426at 3613.272 kb on + strand, within MPMX20_03426at 3613.275 kb on - strand, within MPMX20_03426at 3613.289 kb on + strand, within MPMX20_03426at 3613.340 kb on + strand, within MPMX20_03426at 3613.348 kb on - strand, within MPMX20_03426at 3613.348 kb on - strand, within MPMX20_03426at 3613.348 kb on - strand, within MPMX20_03426at 3613.350 kb on + strand, within MPMX20_03426at 3613.373 kb on + strand, within MPMX20_03426at 3613.390 kb on - strand, within MPMX20_03426at 3613.462 kb on - strand, within MPMX20_03426at 3613.491 kb on + strand, within MPMX20_03426at 3613.491 kb on + strand, within MPMX20_03426at 3613.496 kb on - strand, within MPMX20_03426at 3613.499 kb on - strand, within MPMX20_03426at 3613.499 kb on - strand, within MPMX20_03426at 3613.578 kb on - strand, within MPMX20_03426at 3613.599 kb on - strand, within MPMX20_03426at 3613.624 kb on - strand, within MPMX20_03426at 3613.770 kb on - strand, within MPMX20_03426at 3613.792 kb on - strand, within MPMX20_03426at 3613.827 kb on - strand, within MPMX20_03426at 3613.863 kb on + strand, within MPMX20_03426at 3613.890 kb on + strand, within MPMX20_03426at 3613.905 kb on + strand, within MPMX20_03426at 3613.957 kb on + strand, within MPMX20_03426at 3614.029 kb on - strand, within MPMX20_03426at 3614.304 kb on + strand, within MPMX20_03426at 3614.312 kb on - strand, within MPMX20_03426at 3614.351 kb on + strand, within MPMX20_03426at 3614.351 kb on + strand, within MPMX20_03426at 3614.351 kb on + strand, within MPMX20_03426at 3614.353 kb on - strand, within MPMX20_03426at 3614.359 kb on - strand, within MPMX20_03426at 3614.359 kb on - strand, within MPMX20_03426at 3614.359 kb on - strand, within MPMX20_03426at 3614.359 kb on - strand, within MPMX20_03426at 3614.462 kb on - strand, within MPMX20_03426at 3614.513 kb on - strand, within MPMX20_03426at 3614.618 kb on + strand, within MPMX20_03426at 3614.673 kb on + strand, within MPMX20_03426at 3614.834 kb on + strand, within MPMX20_03426at 3615.078 kb on - strand, within MPMX20_03426at 3615.081 kb on + strand, within MPMX20_03426at 3615.081 kb on + strand, within MPMX20_03426at 3615.081 kb on + strand, within MPMX20_03426at 3615.081 kb on + strand, within MPMX20_03426at 3615.084 kb on - strand, within MPMX20_03426at 3615.089 kb on - strand, within MPMX20_03426at 3615.089 kb on - strand, within MPMX20_03426at 3615.089 kb on - strand, within MPMX20_03426at 3615.089 kb on - strand, within MPMX20_03426at 3615.097 kb on - strand, within MPMX20_03426at 3615.194 kb on - strand, within MPMX20_03426at 3615.197 kb on - strand, within MPMX20_03426at 3615.237 kb on + strand, within MPMX20_03426at 3615.237 kb on + strand, within MPMX20_03426at 3615.242 kb on + strand, within MPMX20_03426at 3615.250 kb on - strand, within MPMX20_03426at 3615.408 kb on + strand, within MPMX20_03426at 3615.412 kb on - strand, within MPMX20_03426at 3615.487 kb on + strand, within MPMX20_03426at 3615.523 kb on + strandat 3615.523 kb on + strandat 3615.523 kb on + strandat 3615.523 kb on + strandat 3615.528 kb on + strandat 3615.528 kb on + strandat 3615.528 kb on + strandat 3615.528 kb on + strandat 3615.528 kb on + strandat 3615.528 kb on + strandat 3615.536 kb on - strandat 3615.536 kb on - strandat 3615.536 kb on - strandat 3615.536 kb on - strandat 3615.545 kb on + strandat 3615.675 kb on + strandat 3615.675 kb on + strandat 3615.675 kb on + strandat 3615.683 kb on - strandat 3615.690 kb on + strandat 3615.693 kb on - strandat 3615.701 kb on + strandat 3615.739 kb on + strandat 3615.747 kb on - strandat 3615.749 kb on + strandat 3615.885 kb on + strandat 3616.113 kb on - strandat 3616.113 kb on - strandat 3616.213 kb on - strandat 3616.251 kb on - strandat 3616.289 kb on + strandat 3616.377 kb on - strand, within MPMX20_03427at 3616.379 kb on + strand, within MPMX20_03427at 3616.443 kb on - strand, within MPMX20_03427at 3616.448 kb on - strand, within MPMX20_03427at 3616.453 kb on + strand, within MPMX20_03427at 3616.471 kb on + strand, within MPMX20_03427at 3616.477 kb on + strand, within MPMX20_03427at 3616.485 kb on - strand, within MPMX20_03427at 3616.485 kb on - strand, within MPMX20_03427at 3616.562 kb on - strand, within MPMX20_03427at 3616.600 kb on + strand, within MPMX20_03427at 3616.621 kb on - strand, within MPMX20_03427at 3616.654 kb on - strand, within MPMX20_03427at 3616.674 kb on + strand, within MPMX20_03427at 3616.759 kb on - strand, within MPMX20_03427at 3616.772 kb on + strand, within MPMX20_03427at 3616.841 kb on + strand, within MPMX20_03427at 3616.849 kb on - strand, within MPMX20_03427at 3616.849 kb on - strand, within MPMX20_03427at 3616.859 kb on - strand, within MPMX20_03427at 3616.860 kb on + strand, within MPMX20_03427at 3616.862 kb on + strand, within MPMX20_03427

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,610,995 - MPMX20_03425 0.70 +0.9
3,611,014 - MPMX20_03425 0.71 +0.2
3,611,077 + MPMX20_03425 0.75 +1.2
3,611,162 - MPMX20_03425 0.82 -0.2
3,611,169 + MPMX20_03425 0.82 +0.5
3,611,270 + MPMX20_03425 0.89 +0.9
3,611,270 + MPMX20_03425 0.89 +0.6
3,611,320 + -0.1
3,611,381 + -0.4
3,611,419 + +0.5
3,611,489 - -0.4
3,611,527 - +0.0
3,611,527 - +0.4
3,611,616 - +0.1
3,612,065 + -0.7
3,612,066 + -1.8
3,612,091 - -0.3
3,612,147 - -2.7
3,612,169 + -0.9
3,612,256 + -0.5
3,612,261 - -0.5
3,612,269 - -2.5
3,612,352 + -0.6
3,612,461 - MPMX20_03426 0.12 -3.6
3,612,544 + MPMX20_03426 0.14 -0.7
3,612,552 + MPMX20_03426 0.14 -0.9
3,612,552 - MPMX20_03426 0.14 -1.3
3,612,568 + MPMX20_03426 0.15 -1.6
3,612,571 - MPMX20_03426 0.15 -1.2
3,612,571 - MPMX20_03426 0.15 -1.2
3,612,573 + MPMX20_03426 0.15 +1.1
3,612,576 - MPMX20_03426 0.15 -1.7
3,612,586 - MPMX20_03426 0.15 -0.4
3,612,641 - MPMX20_03426 0.17 +0.6
3,612,700 + MPMX20_03426 0.18 -1.5
3,612,708 - MPMX20_03426 0.18 -0.7
3,612,820 - MPMX20_03426 0.21 -0.5
3,612,834 + MPMX20_03426 0.22 -0.6
3,612,834 + MPMX20_03426 0.22 -0.8
3,612,882 + MPMX20_03426 0.23 -1.2
3,612,950 - MPMX20_03426 0.25 -0.9
3,612,950 - MPMX20_03426 0.25 -1.2
3,612,950 - MPMX20_03426 0.25 -1.3
3,613,010 + MPMX20_03426 0.26 -1.8
3,613,010 + MPMX20_03426 0.26 -1.0
3,613,018 - MPMX20_03426 0.26 -1.6
3,613,018 - MPMX20_03426 0.26 -1.2
3,613,068 - MPMX20_03426 0.28 -0.4
3,613,115 + MPMX20_03426 0.29 -0.1
3,613,193 + MPMX20_03426 0.31 -1.1
3,613,257 + MPMX20_03426 0.32 -1.1
3,613,267 + MPMX20_03426 0.33 -1.1
3,613,267 + MPMX20_03426 0.33 -1.6
3,613,272 + MPMX20_03426 0.33 -1.1
3,613,275 - MPMX20_03426 0.33 +0.9
3,613,289 + MPMX20_03426 0.33 -1.0
3,613,340 + MPMX20_03426 0.35 +0.9
3,613,348 - MPMX20_03426 0.35 +1.3
3,613,348 - MPMX20_03426 0.35 -2.2
3,613,348 - MPMX20_03426 0.35 +0.2
3,613,350 + MPMX20_03426 0.35 -1.1
3,613,373 + MPMX20_03426 0.35 -0.3
3,613,390 - MPMX20_03426 0.36 -0.1
3,613,462 - MPMX20_03426 0.38 -0.2
3,613,491 + MPMX20_03426 0.38 -0.4
3,613,491 + MPMX20_03426 0.38 -1.9
3,613,496 - MPMX20_03426 0.39 +1.3
3,613,499 - MPMX20_03426 0.39 -0.7
3,613,499 - MPMX20_03426 0.39 -0.5
3,613,578 - MPMX20_03426 0.41 -0.9
3,613,599 - MPMX20_03426 0.41 -1.5
3,613,624 - MPMX20_03426 0.42 -1.1
3,613,770 - MPMX20_03426 0.46 +0.9
3,613,792 - MPMX20_03426 0.46 -0.5
3,613,827 - MPMX20_03426 0.47 -0.3
3,613,863 + MPMX20_03426 0.48 -2.1
3,613,890 + MPMX20_03426 0.49 -2.2
3,613,905 + MPMX20_03426 0.49 -2.1
3,613,957 + MPMX20_03426 0.50 -0.1
3,614,029 - MPMX20_03426 0.52 +1.2
3,614,304 + MPMX20_03426 0.59 +0.1
3,614,312 - MPMX20_03426 0.60 -0.5
3,614,351 + MPMX20_03426 0.61 -0.9
3,614,351 + MPMX20_03426 0.61 -0.1
3,614,351 + MPMX20_03426 0.61 -0.3
3,614,353 - MPMX20_03426 0.61 -1.7
3,614,359 - MPMX20_03426 0.61 -2.1
3,614,359 - MPMX20_03426 0.61 -1.0
3,614,359 - MPMX20_03426 0.61 +0.1
3,614,359 - MPMX20_03426 0.61 -0.8
3,614,462 - MPMX20_03426 0.63 +0.7
3,614,513 - MPMX20_03426 0.65 -0.8
3,614,618 + MPMX20_03426 0.67 -0.8
3,614,673 + MPMX20_03426 0.69 -1.6
3,614,834 + MPMX20_03426 0.73 -2.1
3,615,078 - MPMX20_03426 0.79 -0.7
3,615,081 + MPMX20_03426 0.79 -2.5
3,615,081 + MPMX20_03426 0.79 +0.3
3,615,081 + MPMX20_03426 0.79 -2.9
3,615,081 + MPMX20_03426 0.79 -1.1
3,615,084 - MPMX20_03426 0.79 -0.5
3,615,089 - MPMX20_03426 0.80 -0.6
3,615,089 - MPMX20_03426 0.80 -0.3
3,615,089 - MPMX20_03426 0.80 +0.3
3,615,089 - MPMX20_03426 0.80 -0.9
3,615,097 - MPMX20_03426 0.80 +0.3
3,615,194 - MPMX20_03426 0.82 -2.3
3,615,197 - MPMX20_03426 0.82 -1.7
3,615,237 + MPMX20_03426 0.83 -1.0
3,615,237 + MPMX20_03426 0.83 -1.7
3,615,242 + MPMX20_03426 0.84 -2.1
3,615,250 - MPMX20_03426 0.84 -1.8
3,615,408 + MPMX20_03426 0.88 -2.5
3,615,412 - MPMX20_03426 0.88 -1.9
3,615,487 + MPMX20_03426 0.90 -0.9
3,615,523 + -0.9
3,615,523 + +0.2
3,615,523 + +0.9
3,615,523 + -0.2
3,615,528 + -0.7
3,615,528 + -1.1
3,615,528 + -1.3
3,615,528 + -1.5
3,615,528 + -0.3
3,615,528 + -0.6
3,615,536 - -0.9
3,615,536 - -1.2
3,615,536 - -0.9
3,615,536 - -2.3
3,615,545 + -1.1
3,615,675 + -1.4
3,615,675 + -0.9
3,615,675 + -1.0
3,615,683 - -0.9
3,615,690 + -0.8
3,615,693 - -0.7
3,615,701 + -0.6
3,615,739 + -1.7
3,615,747 - -0.1
3,615,749 + -0.3
3,615,885 + -0.4
3,616,113 - -0.4
3,616,113 - +1.1
3,616,213 - -1.2
3,616,251 - -0.3
3,616,289 + +0.9
3,616,377 - MPMX20_03427 0.15 +0.7
3,616,379 + MPMX20_03427 0.15 -1.1
3,616,443 - MPMX20_03427 0.19 +0.9
3,616,448 - MPMX20_03427 0.19 -0.5
3,616,453 + MPMX20_03427 0.20 -0.2
3,616,471 + MPMX20_03427 0.21 +0.3
3,616,477 + MPMX20_03427 0.21 +0.1
3,616,485 - MPMX20_03427 0.22 +0.1
3,616,485 - MPMX20_03427 0.22 -1.9
3,616,562 - MPMX20_03427 0.27 -0.5
3,616,600 + MPMX20_03427 0.29 +0.1
3,616,621 - MPMX20_03427 0.30 -0.6
3,616,654 - MPMX20_03427 0.32 -0.7
3,616,674 + MPMX20_03427 0.34 +0.6
3,616,759 - MPMX20_03427 0.39 +1.4
3,616,772 + MPMX20_03427 0.40 +2.4
3,616,841 + MPMX20_03427 0.45 +0.5
3,616,849 - MPMX20_03427 0.45 -1.5
3,616,849 - MPMX20_03427 0.45 +0.2
3,616,859 - MPMX20_03427 0.46 -2.1
3,616,860 + MPMX20_03427 0.46 -1.2
3,616,862 + MPMX20_03427 0.46 +0.4

Or see this region's nucleotide sequence