Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03408

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03407 and MPMX20_03408 are separated by 14 nucleotidesMPMX20_03408 and MPMX20_03409 are separated by 76 nucleotidesMPMX20_03409 and MPMX20_03410 are separated by 13 nucleotidesMPMX20_03410 and MPMX20_03411 are separated by 23 nucleotides MPMX20_03407: MPMX20_03407 - Chaperone protein HscA, at 3,592,973 to 3,594,823 _03407 MPMX20_03408: MPMX20_03408 - Co-chaperone protein HscB, at 3,594,838 to 3,595,353 _03408 MPMX20_03409: MPMX20_03409 - Iron-binding protein IscA, at 3,595,430 to 3,595,753 _03409 MPMX20_03410: MPMX20_03410 - Iron-sulfur cluster assembly scaffold protein IscU, at 3,595,767 to 3,596,153 _03410 MPMX20_03411: MPMX20_03411 - Cysteine desulfurase IscS, at 3,596,177 to 3,597,391 _03411 Position (kb) 3594 3595 3596Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3593.890 kb on - strand, within MPMX20_03407at 3593.970 kb on + strand, within MPMX20_03407at 3593.978 kb on - strand, within MPMX20_03407at 3593.978 kb on - strand, within MPMX20_03407at 3594.324 kb on + strand, within MPMX20_03407at 3594.447 kb on + strand, within MPMX20_03407at 3594.455 kb on - strand, within MPMX20_03407at 3594.530 kb on + strand, within MPMX20_03407at 3594.538 kb on - strand, within MPMX20_03407at 3594.611 kb on - strand, within MPMX20_03407at 3594.788 kb on + strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.877 kb on + strandat 3594.937 kb on - strand, within MPMX20_03408at 3594.974 kb on + strand, within MPMX20_03408at 3595.017 kb on - strand, within MPMX20_03408at 3595.025 kb on + strand, within MPMX20_03408at 3595.159 kb on - strand, within MPMX20_03408at 3595.186 kb on - strand, within MPMX20_03408at 3595.219 kb on + strand, within MPMX20_03408at 3595.328 kb on + strandat 3595.336 kb on - strandat 3595.450 kb on - strandat 3595.464 kb on + strand, within MPMX20_03409at 3595.467 kb on - strand, within MPMX20_03409at 3595.528 kb on - strand, within MPMX20_03409at 3595.557 kb on - strand, within MPMX20_03409at 3595.585 kb on - strand, within MPMX20_03409at 3595.633 kb on - strand, within MPMX20_03409at 3595.687 kb on - strand, within MPMX20_03409at 3595.749 kb on - strandat 3595.749 kb on - strandat 3595.983 kb on - strand, within MPMX20_03410at 3596.199 kb on - strandat 3596.199 kb on - strandat 3596.199 kb on - strandat 3596.199 kb on - strandat 3596.201 kb on + strandat 3596.201 kb on + strandat 3596.201 kb on + strandat 3596.201 kb on + strandat 3596.201 kb on + strandat 3596.226 kb on - strandat 3596.245 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,593,890 - MPMX20_03407 0.50 -1.1
3,593,970 + MPMX20_03407 0.54 -2.1
3,593,978 - MPMX20_03407 0.54 -0.6
3,593,978 - MPMX20_03407 0.54 -1.5
3,594,324 + MPMX20_03407 0.73 -1.7
3,594,447 + MPMX20_03407 0.80 -0.1
3,594,455 - MPMX20_03407 0.80 -0.7
3,594,530 + MPMX20_03407 0.84 -1.7
3,594,538 - MPMX20_03407 0.85 +1.9
3,594,611 - MPMX20_03407 0.88 -2.5
3,594,788 + -1.9
3,594,875 - -0.7
3,594,875 - +0.5
3,594,875 - +0.1
3,594,875 - +0.4
3,594,875 - -0.7
3,594,875 - +0.9
3,594,875 - -0.9
3,594,875 - +0.8
3,594,877 + +0.9
3,594,937 - MPMX20_03408 0.19 -1.7
3,594,974 + MPMX20_03408 0.26 -1.7
3,595,017 - MPMX20_03408 0.35 -1.4
3,595,025 + MPMX20_03408 0.36 -1.9
3,595,159 - MPMX20_03408 0.62 +0.1
3,595,186 - MPMX20_03408 0.67 -1.1
3,595,219 + MPMX20_03408 0.74 -1.7
3,595,328 + -1.1
3,595,336 - -1.4
3,595,450 - -1.8
3,595,464 + MPMX20_03409 0.10 -2.3
3,595,467 - MPMX20_03409 0.11 -3.3
3,595,528 - MPMX20_03409 0.30 -0.7
3,595,557 - MPMX20_03409 0.39 -1.5
3,595,585 - MPMX20_03409 0.48 -0.7
3,595,633 - MPMX20_03409 0.63 -0.1
3,595,687 - MPMX20_03409 0.79 +0.3
3,595,749 - +0.3
3,595,749 - -1.7
3,595,983 - MPMX20_03410 0.56 -3.1
3,596,199 - -0.1
3,596,199 - +0.9
3,596,199 - -1.2
3,596,199 - -0.5
3,596,201 + -1.1
3,596,201 + -2.5
3,596,201 + -1.1
3,596,201 + -2.1
3,596,201 + -2.3
3,596,226 - -0.6
3,596,245 + -0.9

Or see this region's nucleotide sequence