Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03407

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03404 and MPMX20_03405 are separated by 53 nucleotidesMPMX20_03405 and MPMX20_03406 are separated by 1 nucleotidesMPMX20_03406 and MPMX20_03407 are separated by 1 nucleotidesMPMX20_03407 and MPMX20_03408 are separated by 14 nucleotidesMPMX20_03408 and MPMX20_03409 are separated by 76 nucleotidesMPMX20_03409 and MPMX20_03410 are separated by 13 nucleotides MPMX20_03404: MPMX20_03404 - Peptidase B, at 3,591,094 to 3,592,380 _03404 MPMX20_03405: MPMX20_03405 - Protein IscX, at 3,592,434 to 3,592,634 _03405 MPMX20_03406: MPMX20_03406 - 2Fe-2S ferredoxin, at 3,592,636 to 3,592,971 _03406 MPMX20_03407: MPMX20_03407 - Chaperone protein HscA, at 3,592,973 to 3,594,823 _03407 MPMX20_03408: MPMX20_03408 - Co-chaperone protein HscB, at 3,594,838 to 3,595,353 _03408 MPMX20_03409: MPMX20_03409 - Iron-binding protein IscA, at 3,595,430 to 3,595,753 _03409 MPMX20_03410: MPMX20_03410 - Iron-sulfur cluster assembly scaffold protein IscU, at 3,595,767 to 3,596,153 _03410 Position (kb) 3592 3593 3594 3595Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3591.982 kb on - strand, within MPMX20_03404at 3591.992 kb on - strand, within MPMX20_03404at 3592.016 kb on - strand, within MPMX20_03404at 3592.171 kb on - strand, within MPMX20_03404at 3592.257 kb on - strandat 3592.284 kb on + strandat 3592.284 kb on + strandat 3592.292 kb on - strandat 3592.292 kb on - strandat 3592.292 kb on - strandat 3592.363 kb on - strandat 3592.410 kb on + strandat 3592.410 kb on + strandat 3592.410 kb on + strandat 3592.418 kb on - strandat 3592.418 kb on - strandat 3592.418 kb on - strandat 3592.418 kb on - strandat 3592.418 kb on - strandat 3592.439 kb on - strandat 3592.543 kb on + strand, within MPMX20_03405at 3592.590 kb on - strand, within MPMX20_03405at 3592.618 kb on + strandat 3592.621 kb on - strandat 3592.626 kb on - strandat 3592.639 kb on + strandat 3592.639 kb on + strandat 3592.647 kb on - strandat 3592.747 kb on - strand, within MPMX20_03406at 3593.024 kb on - strandat 3593.024 kb on - strandat 3593.466 kb on - strand, within MPMX20_03407at 3593.483 kb on + strand, within MPMX20_03407at 3593.715 kb on - strand, within MPMX20_03407at 3593.758 kb on - strand, within MPMX20_03407at 3593.758 kb on - strand, within MPMX20_03407at 3593.792 kb on + strand, within MPMX20_03407at 3593.890 kb on - strand, within MPMX20_03407at 3593.970 kb on + strand, within MPMX20_03407at 3593.978 kb on - strand, within MPMX20_03407at 3593.978 kb on - strand, within MPMX20_03407at 3594.324 kb on + strand, within MPMX20_03407at 3594.447 kb on + strand, within MPMX20_03407at 3594.455 kb on - strand, within MPMX20_03407at 3594.530 kb on + strand, within MPMX20_03407at 3594.538 kb on - strand, within MPMX20_03407at 3594.611 kb on - strand, within MPMX20_03407at 3594.788 kb on + strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.875 kb on - strandat 3594.877 kb on + strandat 3594.937 kb on - strand, within MPMX20_03408at 3594.974 kb on + strand, within MPMX20_03408at 3595.017 kb on - strand, within MPMX20_03408at 3595.025 kb on + strand, within MPMX20_03408at 3595.159 kb on - strand, within MPMX20_03408at 3595.186 kb on - strand, within MPMX20_03408at 3595.219 kb on + strand, within MPMX20_03408at 3595.328 kb on + strandat 3595.336 kb on - strandat 3595.450 kb on - strandat 3595.464 kb on + strand, within MPMX20_03409at 3595.467 kb on - strand, within MPMX20_03409at 3595.528 kb on - strand, within MPMX20_03409at 3595.557 kb on - strand, within MPMX20_03409at 3595.585 kb on - strand, within MPMX20_03409at 3595.633 kb on - strand, within MPMX20_03409at 3595.687 kb on - strand, within MPMX20_03409at 3595.749 kb on - strandat 3595.749 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,591,982 - MPMX20_03404 0.69 +0.7
3,591,992 - MPMX20_03404 0.70 +0.9
3,592,016 - MPMX20_03404 0.72 +0.3
3,592,171 - MPMX20_03404 0.84 -0.3
3,592,257 - -0.0
3,592,284 + -0.4
3,592,284 + +0.5
3,592,292 - +0.5
3,592,292 - -0.5
3,592,292 - -0.0
3,592,363 - +2.1
3,592,410 + +0.1
3,592,410 + -0.7
3,592,410 + -0.1
3,592,418 - +0.6
3,592,418 - -1.1
3,592,418 - -0.8
3,592,418 - +0.2
3,592,418 - +0.2
3,592,439 - -0.2
3,592,543 + MPMX20_03405 0.54 -0.1
3,592,590 - MPMX20_03405 0.78 +0.6
3,592,618 + -0.6
3,592,621 - -1.1
3,592,626 - +0.0
3,592,639 + -2.1
3,592,639 + +0.6
3,592,647 - -1.0
3,592,747 - MPMX20_03406 0.33 -2.4
3,593,024 - -1.5
3,593,024 - -1.2
3,593,466 - MPMX20_03407 0.27 -0.1
3,593,483 + MPMX20_03407 0.28 +0.9
3,593,715 - MPMX20_03407 0.40 -0.3
3,593,758 - MPMX20_03407 0.42 -0.7
3,593,758 - MPMX20_03407 0.42 -0.9
3,593,792 + MPMX20_03407 0.44 -2.5
3,593,890 - MPMX20_03407 0.50 -1.1
3,593,970 + MPMX20_03407 0.54 -2.1
3,593,978 - MPMX20_03407 0.54 -0.6
3,593,978 - MPMX20_03407 0.54 -1.5
3,594,324 + MPMX20_03407 0.73 -1.7
3,594,447 + MPMX20_03407 0.80 -0.1
3,594,455 - MPMX20_03407 0.80 -0.7
3,594,530 + MPMX20_03407 0.84 -1.7
3,594,538 - MPMX20_03407 0.85 +1.9
3,594,611 - MPMX20_03407 0.88 -2.5
3,594,788 + -1.9
3,594,875 - -0.7
3,594,875 - +0.5
3,594,875 - +0.1
3,594,875 - +0.4
3,594,875 - -0.7
3,594,875 - +0.9
3,594,875 - -0.9
3,594,875 - +0.8
3,594,877 + +0.9
3,594,937 - MPMX20_03408 0.19 -1.7
3,594,974 + MPMX20_03408 0.26 -1.7
3,595,017 - MPMX20_03408 0.35 -1.4
3,595,025 + MPMX20_03408 0.36 -1.9
3,595,159 - MPMX20_03408 0.62 +0.1
3,595,186 - MPMX20_03408 0.67 -1.1
3,595,219 + MPMX20_03408 0.74 -1.7
3,595,328 + -1.1
3,595,336 - -1.4
3,595,450 - -1.8
3,595,464 + MPMX20_03409 0.10 -2.3
3,595,467 - MPMX20_03409 0.11 -3.3
3,595,528 - MPMX20_03409 0.30 -0.7
3,595,557 - MPMX20_03409 0.39 -1.5
3,595,585 - MPMX20_03409 0.48 -0.7
3,595,633 - MPMX20_03409 0.63 -0.1
3,595,687 - MPMX20_03409 0.79 +0.3
3,595,749 - +0.3
3,595,749 - -1.7

Or see this region's nucleotide sequence