Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03404 and MPMX20_03405 are separated by 53 nucleotides MPMX20_03405 and MPMX20_03406 are separated by 1 nucleotides MPMX20_03406 and MPMX20_03407 are separated by 1 nucleotides MPMX20_03407 and MPMX20_03408 are separated by 14 nucleotides MPMX20_03408 and MPMX20_03409 are separated by 76 nucleotides MPMX20_03409 and MPMX20_03410 are separated by 13 nucleotides
MPMX20_03404: MPMX20_03404 - Peptidase B, at 3,591,094 to 3,592,380
_03404
MPMX20_03405: MPMX20_03405 - Protein IscX, at 3,592,434 to 3,592,634
_03405
MPMX20_03406: MPMX20_03406 - 2Fe-2S ferredoxin, at 3,592,636 to 3,592,971
_03406
MPMX20_03407: MPMX20_03407 - Chaperone protein HscA, at 3,592,973 to 3,594,823
_03407
MPMX20_03408: MPMX20_03408 - Co-chaperone protein HscB, at 3,594,838 to 3,595,353
_03408
MPMX20_03409: MPMX20_03409 - Iron-binding protein IscA, at 3,595,430 to 3,595,753
_03409
MPMX20_03410: MPMX20_03410 - Iron-sulfur cluster assembly scaffold protein IscU, at 3,595,767 to 3,596,153
_03410
Position (kb)
3592
3593
3594
3595 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3591.982 kb on - strand, within MPMX20_03404 at 3591.992 kb on - strand, within MPMX20_03404 at 3592.016 kb on - strand, within MPMX20_03404 at 3592.171 kb on - strand, within MPMX20_03404 at 3592.257 kb on - strand at 3592.284 kb on + strand at 3592.284 kb on + strand at 3592.292 kb on - strand at 3592.292 kb on - strand at 3592.292 kb on - strand at 3592.363 kb on - strand at 3592.410 kb on + strand at 3592.410 kb on + strand at 3592.410 kb on + strand at 3592.418 kb on - strand at 3592.418 kb on - strand at 3592.418 kb on - strand at 3592.418 kb on - strand at 3592.418 kb on - strand at 3592.439 kb on - strand at 3592.543 kb on + strand, within MPMX20_03405 at 3592.590 kb on - strand, within MPMX20_03405 at 3592.618 kb on + strand at 3592.621 kb on - strand at 3592.626 kb on - strand at 3592.639 kb on + strand at 3592.639 kb on + strand at 3592.647 kb on - strand at 3592.747 kb on - strand, within MPMX20_03406 at 3593.024 kb on - strand at 3593.024 kb on - strand at 3593.466 kb on - strand, within MPMX20_03407 at 3593.483 kb on + strand, within MPMX20_03407 at 3593.715 kb on - strand, within MPMX20_03407 at 3593.758 kb on - strand, within MPMX20_03407 at 3593.758 kb on - strand, within MPMX20_03407 at 3593.792 kb on + strand, within MPMX20_03407 at 3593.890 kb on - strand, within MPMX20_03407 at 3593.970 kb on + strand, within MPMX20_03407 at 3593.978 kb on - strand, within MPMX20_03407 at 3593.978 kb on - strand, within MPMX20_03407 at 3594.324 kb on + strand, within MPMX20_03407 at 3594.447 kb on + strand, within MPMX20_03407 at 3594.455 kb on - strand, within MPMX20_03407 at 3594.530 kb on + strand, within MPMX20_03407 at 3594.538 kb on - strand, within MPMX20_03407 at 3594.611 kb on - strand, within MPMX20_03407 at 3594.788 kb on + strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.877 kb on + strand at 3594.937 kb on - strand, within MPMX20_03408 at 3594.974 kb on + strand, within MPMX20_03408 at 3595.017 kb on - strand, within MPMX20_03408 at 3595.025 kb on + strand, within MPMX20_03408 at 3595.159 kb on - strand, within MPMX20_03408 at 3595.186 kb on - strand, within MPMX20_03408 at 3595.219 kb on + strand, within MPMX20_03408 at 3595.328 kb on + strand at 3595.336 kb on - strand at 3595.450 kb on - strand at 3595.464 kb on + strand, within MPMX20_03409 at 3595.467 kb on - strand, within MPMX20_03409 at 3595.528 kb on - strand, within MPMX20_03409 at 3595.557 kb on - strand, within MPMX20_03409 at 3595.585 kb on - strand, within MPMX20_03409 at 3595.633 kb on - strand, within MPMX20_03409 at 3595.687 kb on - strand, within MPMX20_03409 at 3595.749 kb on - strand at 3595.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,591,982 - MPMX20_03404 0.69 +0.7 3,591,992 - MPMX20_03404 0.70 +0.9 3,592,016 - MPMX20_03404 0.72 +0.3 3,592,171 - MPMX20_03404 0.84 -0.3 3,592,257 - -0.0 3,592,284 + -0.4 3,592,284 + +0.5 3,592,292 - +0.5 3,592,292 - -0.5 3,592,292 - -0.0 3,592,363 - +2.1 3,592,410 + +0.1 3,592,410 + -0.7 3,592,410 + -0.1 3,592,418 - +0.6 3,592,418 - -1.1 3,592,418 - -0.8 3,592,418 - +0.2 3,592,418 - +0.2 3,592,439 - -0.2 3,592,543 + MPMX20_03405 0.54 -0.1 3,592,590 - MPMX20_03405 0.78 +0.6 3,592,618 + -0.6 3,592,621 - -1.1 3,592,626 - +0.0 3,592,639 + -2.1 3,592,639 + +0.6 3,592,647 - -1.0 3,592,747 - MPMX20_03406 0.33 -2.4 3,593,024 - -1.5 3,593,024 - -1.2 3,593,466 - MPMX20_03407 0.27 -0.1 3,593,483 + MPMX20_03407 0.28 +0.9 3,593,715 - MPMX20_03407 0.40 -0.3 3,593,758 - MPMX20_03407 0.42 -0.7 3,593,758 - MPMX20_03407 0.42 -0.9 3,593,792 + MPMX20_03407 0.44 -2.5 3,593,890 - MPMX20_03407 0.50 -1.1 3,593,970 + MPMX20_03407 0.54 -2.1 3,593,978 - MPMX20_03407 0.54 -0.6 3,593,978 - MPMX20_03407 0.54 -1.5 3,594,324 + MPMX20_03407 0.73 -1.7 3,594,447 + MPMX20_03407 0.80 -0.1 3,594,455 - MPMX20_03407 0.80 -0.7 3,594,530 + MPMX20_03407 0.84 -1.7 3,594,538 - MPMX20_03407 0.85 +1.9 3,594,611 - MPMX20_03407 0.88 -2.5 3,594,788 + -1.9 3,594,875 - -0.7 3,594,875 - +0.5 3,594,875 - +0.1 3,594,875 - +0.4 3,594,875 - -0.7 3,594,875 - +0.9 3,594,875 - -0.9 3,594,875 - +0.8 3,594,877 + +0.9 3,594,937 - MPMX20_03408 0.19 -1.7 3,594,974 + MPMX20_03408 0.26 -1.7 3,595,017 - MPMX20_03408 0.35 -1.4 3,595,025 + MPMX20_03408 0.36 -1.9 3,595,159 - MPMX20_03408 0.62 +0.1 3,595,186 - MPMX20_03408 0.67 -1.1 3,595,219 + MPMX20_03408 0.74 -1.7 3,595,328 + -1.1 3,595,336 - -1.4 3,595,450 - -1.8 3,595,464 + MPMX20_03409 0.10 -2.3 3,595,467 - MPMX20_03409 0.11 -3.3 3,595,528 - MPMX20_03409 0.30 -0.7 3,595,557 - MPMX20_03409 0.39 -1.5 3,595,585 - MPMX20_03409 0.48 -0.7 3,595,633 - MPMX20_03409 0.63 -0.1 3,595,687 - MPMX20_03409 0.79 +0.3 3,595,749 - +0.3 3,595,749 - -1.7
Or see this region's nucleotide sequence