Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03308 and MPMX20_03309 are separated by 317 nucleotides MPMX20_03309 and MPMX20_03310 are separated by 44 nucleotides
MPMX20_03308: MPMX20_03308 - Cysteine synthase A, at 3,477,164 to 3,478,135
_03308
MPMX20_03309: MPMX20_03309 - Phosphocarrier protein HPr, at 3,478,453 to 3,478,710
_03309
MPMX20_03310: MPMX20_03310 - Phosphoenolpyruvate-protein phosphotransferase, at 3,478,755 to 3,480,482
_03310
Position (kb)
3478
3479 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3477.518 kb on + strand, within MPMX20_03308 at 3477.628 kb on + strand, within MPMX20_03308 at 3477.699 kb on + strand, within MPMX20_03308 at 3477.699 kb on + strand, within MPMX20_03308 at 3477.704 kb on + strand, within MPMX20_03308 at 3477.712 kb on - strand, within MPMX20_03308 at 3477.760 kb on - strand, within MPMX20_03308 at 3477.781 kb on - strand, within MPMX20_03308 at 3477.796 kb on - strand, within MPMX20_03308 at 3477.820 kb on + strand, within MPMX20_03308 at 3477.828 kb on - strand, within MPMX20_03308 at 3477.876 kb on + strand, within MPMX20_03308 at 3477.902 kb on + strand, within MPMX20_03308 at 3477.947 kb on - strand, within MPMX20_03308 at 3478.077 kb on - strand at 3478.089 kb on + strand at 3478.130 kb on + strand at 3478.221 kb on + strand at 3478.404 kb on + strand at 3478.412 kb on - strand at 3478.489 kb on + strand, within MPMX20_03309 at 3478.490 kb on + strand, within MPMX20_03309 at 3478.607 kb on + strand, within MPMX20_03309 at 3478.615 kb on - strand, within MPMX20_03309 at 3478.615 kb on - strand, within MPMX20_03309 at 3478.623 kb on + strand, within MPMX20_03309 at 3478.651 kb on + strand, within MPMX20_03309 at 3478.675 kb on - strand, within MPMX20_03309 at 3478.744 kb on + strand at 3478.928 kb on + strand, within MPMX20_03310 at 3478.969 kb on + strand, within MPMX20_03310 at 3479.045 kb on - strand, within MPMX20_03310 at 3479.191 kb on + strand, within MPMX20_03310 at 3479.203 kb on + strand, within MPMX20_03310 at 3479.228 kb on + strand, within MPMX20_03310 at 3479.246 kb on - strand, within MPMX20_03310 at 3479.331 kb on - strand, within MPMX20_03310 at 3479.341 kb on + strand, within MPMX20_03310 at 3479.476 kb on + strand, within MPMX20_03310 at 3479.558 kb on + strand, within MPMX20_03310 at 3479.632 kb on - strand, within MPMX20_03310
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,477,518 + MPMX20_03308 0.36 -1.1 3,477,628 + MPMX20_03308 0.48 -0.9 3,477,699 + MPMX20_03308 0.55 +0.3 3,477,699 + MPMX20_03308 0.55 -0.5 3,477,704 + MPMX20_03308 0.56 +0.9 3,477,712 - MPMX20_03308 0.56 +0.3 3,477,760 - MPMX20_03308 0.61 -3.1 3,477,781 - MPMX20_03308 0.63 +0.9 3,477,796 - MPMX20_03308 0.65 -1.9 3,477,820 + MPMX20_03308 0.67 -1.1 3,477,828 - MPMX20_03308 0.68 +0.7 3,477,876 + MPMX20_03308 0.73 -0.1 3,477,902 + MPMX20_03308 0.76 +0.2 3,477,947 - MPMX20_03308 0.81 +0.3 3,478,077 - +0.1 3,478,089 + -0.9 3,478,130 + -2.1 3,478,221 + +0.2 3,478,404 + -2.7 3,478,412 - +0.4 3,478,489 + MPMX20_03309 0.14 -1.9 3,478,490 + MPMX20_03309 0.14 -2.1 3,478,607 + MPMX20_03309 0.60 -3.8 3,478,615 - MPMX20_03309 0.63 -2.4 3,478,615 - MPMX20_03309 0.63 -2.1 3,478,623 + MPMX20_03309 0.66 -0.1 3,478,651 + MPMX20_03309 0.77 -2.4 3,478,675 - MPMX20_03309 0.86 -0.9 3,478,744 + -0.1 3,478,928 + MPMX20_03310 0.10 -1.1 3,478,969 + MPMX20_03310 0.12 -2.4 3,479,045 - MPMX20_03310 0.17 -0.9 3,479,191 + MPMX20_03310 0.25 +0.3 3,479,203 + MPMX20_03310 0.26 -0.7 3,479,228 + MPMX20_03310 0.27 -0.7 3,479,246 - MPMX20_03310 0.28 -2.9 3,479,331 - MPMX20_03310 0.33 -0.1 3,479,341 + MPMX20_03310 0.34 -1.1 3,479,476 + MPMX20_03310 0.42 -0.5 3,479,558 + MPMX20_03310 0.46 -0.7 3,479,632 - MPMX20_03310 0.51 -1.0
Or see this region's nucleotide sequence