Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03216 and MPMX20_03217 are separated by 89 nucleotides MPMX20_03217 and MPMX20_03218 are separated by 15 nucleotides MPMX20_03218 and MPMX20_03219 are separated by 630 nucleotides
MPMX20_03216: MPMX20_03216 - NADH-quinone oxidoreductase subunit C/D, at 3,387,011 to 3,388,813
_03216
MPMX20_03217: MPMX20_03217 - NADH-quinone oxidoreductase subunit B, at 3,388,903 to 3,389,577
_03217
MPMX20_03218: MPMX20_03218 - NAD(P)H-quinone oxidoreductase subunit 3, at 3,389,593 to 3,390,033
_03218
MPMX20_03219: MPMX20_03219 - HTH-type transcriptional regulator HdfR, at 3,390,664 to 3,391,578
_03219
Position (kb)
3389
3390
3391 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3388.661 kb on - strand at 3388.664 kb on + strand at 3388.719 kb on + strand at 3388.751 kb on - strand at 3388.797 kb on + strand at 3388.876 kb on + strand at 3388.876 kb on + strand at 3388.876 kb on + strand at 3388.881 kb on + strand at 3388.884 kb on - strand at 3388.916 kb on + strand at 3389.007 kb on + strand, within MPMX20_03217 at 3389.007 kb on + strand, within MPMX20_03217 at 3389.009 kb on + strand, within MPMX20_03217 at 3389.017 kb on - strand, within MPMX20_03217 at 3389.017 kb on - strand, within MPMX20_03217 at 3389.109 kb on - strand, within MPMX20_03217 at 3389.137 kb on + strand, within MPMX20_03217 at 3389.147 kb on + strand, within MPMX20_03217 at 3389.165 kb on + strand, within MPMX20_03217 at 3389.286 kb on - strand, within MPMX20_03217 at 3389.308 kb on + strand, within MPMX20_03217 at 3389.316 kb on - strand, within MPMX20_03217 at 3389.481 kb on - strand, within MPMX20_03217 at 3389.509 kb on - strand, within MPMX20_03217 at 3389.525 kb on + strand at 3389.553 kb on - strand at 3389.553 kb on - strand at 3389.678 kb on - strand, within MPMX20_03218 at 3389.692 kb on - strand, within MPMX20_03218 at 3389.692 kb on - strand, within MPMX20_03218 at 3389.861 kb on - strand, within MPMX20_03218 at 3389.897 kb on - strand, within MPMX20_03218 at 3389.897 kb on - strand, within MPMX20_03218 at 3389.953 kb on + strand, within MPMX20_03218 at 3389.953 kb on + strand, within MPMX20_03218 at 3389.956 kb on - strand, within MPMX20_03218 at 3389.995 kb on + strand at 3390.009 kb on + strand at 3390.009 kb on + strand at 3390.029 kb on + strand at 3390.057 kb on - strand at 3390.067 kb on + strand at 3390.125 kb on - strand at 3390.258 kb on + strand at 3390.258 kb on + strand at 3390.264 kb on + strand at 3390.265 kb on - strand at 3390.273 kb on + strand at 3390.273 kb on + strand at 3390.459 kb on + strand at 3390.459 kb on + strand at 3390.466 kb on - strand at 3390.467 kb on - strand at 3390.470 kb on + strand at 3390.470 kb on + strand at 3390.478 kb on - strand at 3390.657 kb on - strand at 3390.667 kb on - strand at 3390.742 kb on - strand at 3390.808 kb on + strand, within MPMX20_03219 at 3390.816 kb on - strand, within MPMX20_03219 at 3390.831 kb on - strand, within MPMX20_03219 at 3390.837 kb on + strand, within MPMX20_03219 at 3390.845 kb on + strand, within MPMX20_03219 at 3390.845 kb on + strand, within MPMX20_03219 at 3390.845 kb on + strand, within MPMX20_03219 at 3390.853 kb on - strand, within MPMX20_03219 at 3390.853 kb on - strand, within MPMX20_03219 at 3390.853 kb on - strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.864 kb on + strand, within MPMX20_03219 at 3390.872 kb on - strand, within MPMX20_03219 at 3390.872 kb on - strand, within MPMX20_03219 at 3390.872 kb on - strand, within MPMX20_03219 at 3390.888 kb on + strand, within MPMX20_03219 at 3390.888 kb on + strand, within MPMX20_03219 at 3390.896 kb on - strand, within MPMX20_03219 at 3390.900 kb on + strand, within MPMX20_03219 at 3390.900 kb on + strand, within MPMX20_03219 at 3390.902 kb on - strand, within MPMX20_03219 at 3390.906 kb on + strand, within MPMX20_03219 at 3390.908 kb on - strand, within MPMX20_03219 at 3390.908 kb on - strand, within MPMX20_03219 at 3390.911 kb on + strand, within MPMX20_03219 at 3390.918 kb on + strand, within MPMX20_03219 at 3390.941 kb on + strand, within MPMX20_03219 at 3390.956 kb on + strand, within MPMX20_03219 at 3390.958 kb on - strand, within MPMX20_03219 at 3390.971 kb on + strand, within MPMX20_03219 at 3390.971 kb on + strand, within MPMX20_03219 at 3390.996 kb on + strand, within MPMX20_03219 at 3390.996 kb on + strand, within MPMX20_03219 at 3390.997 kb on + strand, within MPMX20_03219 at 3390.999 kb on + strand, within MPMX20_03219 at 3391.022 kb on + strand, within MPMX20_03219
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,388,661 - +0.4 3,388,664 + -0.9 3,388,719 + +1.5 3,388,751 - +0.9 3,388,797 + +0.4 3,388,876 + -0.5 3,388,876 + +0.0 3,388,876 + -1.1 3,388,881 + -2.8 3,388,884 - +0.1 3,388,916 + -1.1 3,389,007 + MPMX20_03217 0.15 +0.1 3,389,007 + MPMX20_03217 0.15 -0.7 3,389,009 + MPMX20_03217 0.16 -0.7 3,389,017 - MPMX20_03217 0.17 -0.7 3,389,017 - MPMX20_03217 0.17 -2.0 3,389,109 - MPMX20_03217 0.31 +0.1 3,389,137 + MPMX20_03217 0.35 +0.5 3,389,147 + MPMX20_03217 0.36 -1.7 3,389,165 + MPMX20_03217 0.39 -1.1 3,389,286 - MPMX20_03217 0.57 +0.7 3,389,308 + MPMX20_03217 0.60 -1.5 3,389,316 - MPMX20_03217 0.61 +0.1 3,389,481 - MPMX20_03217 0.86 -0.1 3,389,509 - MPMX20_03217 0.90 +3.2 3,389,525 + -1.0 3,389,553 - +0.9 3,389,553 - -1.5 3,389,678 - MPMX20_03218 0.19 +0.9 3,389,692 - MPMX20_03218 0.22 -1.7 3,389,692 - MPMX20_03218 0.22 -0.9 3,389,861 - MPMX20_03218 0.61 -0.1 3,389,897 - MPMX20_03218 0.69 +0.1 3,389,897 - MPMX20_03218 0.69 -1.5 3,389,953 + MPMX20_03218 0.82 -1.0 3,389,953 + MPMX20_03218 0.82 -0.4 3,389,956 - MPMX20_03218 0.82 -2.7 3,389,995 + -0.1 3,390,009 + -0.1 3,390,009 + -0.5 3,390,029 + -0.5 3,390,057 - -0.7 3,390,067 + -0.5 3,390,125 - +0.1 3,390,258 + +0.0 3,390,258 + +0.2 3,390,264 + -2.9 3,390,265 - -0.4 3,390,273 + +0.6 3,390,273 + -0.9 3,390,459 + -0.1 3,390,459 + +0.1 3,390,466 - -0.2 3,390,467 - -1.0 3,390,470 + -0.1 3,390,470 + -0.2 3,390,478 - +0.5 3,390,657 - +2.3 3,390,667 - -0.4 3,390,742 - -0.1 3,390,808 + MPMX20_03219 0.16 +0.3 3,390,816 - MPMX20_03219 0.17 -0.1 3,390,831 - MPMX20_03219 0.18 -0.7 3,390,837 + MPMX20_03219 0.19 +0.3 3,390,845 + MPMX20_03219 0.20 -0.4 3,390,845 + MPMX20_03219 0.20 +0.0 3,390,845 + MPMX20_03219 0.20 -1.0 3,390,853 - MPMX20_03219 0.21 +0.2 3,390,853 - MPMX20_03219 0.21 +0.3 3,390,853 - MPMX20_03219 0.21 -0.3 3,390,864 + MPMX20_03219 0.22 -0.3 3,390,864 + MPMX20_03219 0.22 +0.5 3,390,864 + MPMX20_03219 0.22 +0.3 3,390,864 + MPMX20_03219 0.22 -0.3 3,390,864 + MPMX20_03219 0.22 +0.4 3,390,864 + MPMX20_03219 0.22 +0.3 3,390,864 + MPMX20_03219 0.22 +0.1 3,390,864 + MPMX20_03219 0.22 -0.8 3,390,872 - MPMX20_03219 0.23 +0.5 3,390,872 - MPMX20_03219 0.23 -1.3 3,390,872 - MPMX20_03219 0.23 -0.4 3,390,888 + MPMX20_03219 0.24 -0.5 3,390,888 + MPMX20_03219 0.24 +0.1 3,390,896 - MPMX20_03219 0.25 +0.5 3,390,900 + MPMX20_03219 0.26 -0.7 3,390,900 + MPMX20_03219 0.26 +0.5 3,390,902 - MPMX20_03219 0.26 +0.3 3,390,906 + MPMX20_03219 0.26 +1.1 3,390,908 - MPMX20_03219 0.27 -0.9 3,390,908 - MPMX20_03219 0.27 -0.8 3,390,911 + MPMX20_03219 0.27 -1.7 3,390,918 + MPMX20_03219 0.28 -1.0 3,390,941 + MPMX20_03219 0.30 +0.1 3,390,956 + MPMX20_03219 0.32 -0.0 3,390,958 - MPMX20_03219 0.32 +0.2 3,390,971 + MPMX20_03219 0.34 -0.9 3,390,971 + MPMX20_03219 0.34 -0.2 3,390,996 + MPMX20_03219 0.36 -0.7 3,390,996 + MPMX20_03219 0.36 +0.8 3,390,997 + MPMX20_03219 0.36 -1.8 3,390,999 + MPMX20_03219 0.37 -1.6 3,391,022 + MPMX20_03219 0.39 +0.1
Or see this region's nucleotide sequence