Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03218

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03216 and MPMX20_03217 are separated by 89 nucleotidesMPMX20_03217 and MPMX20_03218 are separated by 15 nucleotidesMPMX20_03218 and MPMX20_03219 are separated by 630 nucleotides MPMX20_03216: MPMX20_03216 - NADH-quinone oxidoreductase subunit C/D, at 3,387,011 to 3,388,813 _03216 MPMX20_03217: MPMX20_03217 - NADH-quinone oxidoreductase subunit B, at 3,388,903 to 3,389,577 _03217 MPMX20_03218: MPMX20_03218 - NAD(P)H-quinone oxidoreductase subunit 3, at 3,389,593 to 3,390,033 _03218 MPMX20_03219: MPMX20_03219 - HTH-type transcriptional regulator HdfR, at 3,390,664 to 3,391,578 _03219 Position (kb) 3389 3390 3391Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3388.661 kb on - strandat 3388.664 kb on + strandat 3388.719 kb on + strandat 3388.751 kb on - strandat 3388.797 kb on + strandat 3388.876 kb on + strandat 3388.876 kb on + strandat 3388.876 kb on + strandat 3388.881 kb on + strandat 3388.884 kb on - strandat 3388.916 kb on + strandat 3389.007 kb on + strand, within MPMX20_03217at 3389.007 kb on + strand, within MPMX20_03217at 3389.009 kb on + strand, within MPMX20_03217at 3389.017 kb on - strand, within MPMX20_03217at 3389.017 kb on - strand, within MPMX20_03217at 3389.109 kb on - strand, within MPMX20_03217at 3389.137 kb on + strand, within MPMX20_03217at 3389.147 kb on + strand, within MPMX20_03217at 3389.165 kb on + strand, within MPMX20_03217at 3389.286 kb on - strand, within MPMX20_03217at 3389.308 kb on + strand, within MPMX20_03217at 3389.316 kb on - strand, within MPMX20_03217at 3389.481 kb on - strand, within MPMX20_03217at 3389.509 kb on - strand, within MPMX20_03217at 3389.525 kb on + strandat 3389.553 kb on - strandat 3389.553 kb on - strandat 3389.678 kb on - strand, within MPMX20_03218at 3389.692 kb on - strand, within MPMX20_03218at 3389.692 kb on - strand, within MPMX20_03218at 3389.861 kb on - strand, within MPMX20_03218at 3389.897 kb on - strand, within MPMX20_03218at 3389.897 kb on - strand, within MPMX20_03218at 3389.953 kb on + strand, within MPMX20_03218at 3389.953 kb on + strand, within MPMX20_03218at 3389.956 kb on - strand, within MPMX20_03218at 3389.995 kb on + strandat 3390.009 kb on + strandat 3390.009 kb on + strandat 3390.029 kb on + strandat 3390.057 kb on - strandat 3390.067 kb on + strandat 3390.125 kb on - strandat 3390.258 kb on + strandat 3390.258 kb on + strandat 3390.264 kb on + strandat 3390.265 kb on - strandat 3390.273 kb on + strandat 3390.273 kb on + strandat 3390.459 kb on + strandat 3390.459 kb on + strandat 3390.466 kb on - strandat 3390.467 kb on - strandat 3390.470 kb on + strandat 3390.470 kb on + strandat 3390.478 kb on - strandat 3390.657 kb on - strandat 3390.667 kb on - strandat 3390.742 kb on - strandat 3390.808 kb on + strand, within MPMX20_03219at 3390.816 kb on - strand, within MPMX20_03219at 3390.831 kb on - strand, within MPMX20_03219at 3390.837 kb on + strand, within MPMX20_03219at 3390.845 kb on + strand, within MPMX20_03219at 3390.845 kb on + strand, within MPMX20_03219at 3390.845 kb on + strand, within MPMX20_03219at 3390.853 kb on - strand, within MPMX20_03219at 3390.853 kb on - strand, within MPMX20_03219at 3390.853 kb on - strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.864 kb on + strand, within MPMX20_03219at 3390.872 kb on - strand, within MPMX20_03219at 3390.872 kb on - strand, within MPMX20_03219at 3390.872 kb on - strand, within MPMX20_03219at 3390.888 kb on + strand, within MPMX20_03219at 3390.888 kb on + strand, within MPMX20_03219at 3390.896 kb on - strand, within MPMX20_03219at 3390.900 kb on + strand, within MPMX20_03219at 3390.900 kb on + strand, within MPMX20_03219at 3390.902 kb on - strand, within MPMX20_03219at 3390.906 kb on + strand, within MPMX20_03219at 3390.908 kb on - strand, within MPMX20_03219at 3390.908 kb on - strand, within MPMX20_03219at 3390.911 kb on + strand, within MPMX20_03219at 3390.918 kb on + strand, within MPMX20_03219at 3390.941 kb on + strand, within MPMX20_03219at 3390.956 kb on + strand, within MPMX20_03219at 3390.958 kb on - strand, within MPMX20_03219at 3390.971 kb on + strand, within MPMX20_03219at 3390.971 kb on + strand, within MPMX20_03219at 3390.996 kb on + strand, within MPMX20_03219at 3390.996 kb on + strand, within MPMX20_03219at 3390.997 kb on + strand, within MPMX20_03219at 3390.999 kb on + strand, within MPMX20_03219at 3391.022 kb on + strand, within MPMX20_03219

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,388,661 - +0.4
3,388,664 + -0.9
3,388,719 + +1.5
3,388,751 - +0.9
3,388,797 + +0.4
3,388,876 + -0.5
3,388,876 + +0.0
3,388,876 + -1.1
3,388,881 + -2.8
3,388,884 - +0.1
3,388,916 + -1.1
3,389,007 + MPMX20_03217 0.15 +0.1
3,389,007 + MPMX20_03217 0.15 -0.7
3,389,009 + MPMX20_03217 0.16 -0.7
3,389,017 - MPMX20_03217 0.17 -0.7
3,389,017 - MPMX20_03217 0.17 -2.0
3,389,109 - MPMX20_03217 0.31 +0.1
3,389,137 + MPMX20_03217 0.35 +0.5
3,389,147 + MPMX20_03217 0.36 -1.7
3,389,165 + MPMX20_03217 0.39 -1.1
3,389,286 - MPMX20_03217 0.57 +0.7
3,389,308 + MPMX20_03217 0.60 -1.5
3,389,316 - MPMX20_03217 0.61 +0.1
3,389,481 - MPMX20_03217 0.86 -0.1
3,389,509 - MPMX20_03217 0.90 +3.2
3,389,525 + -1.0
3,389,553 - +0.9
3,389,553 - -1.5
3,389,678 - MPMX20_03218 0.19 +0.9
3,389,692 - MPMX20_03218 0.22 -1.7
3,389,692 - MPMX20_03218 0.22 -0.9
3,389,861 - MPMX20_03218 0.61 -0.1
3,389,897 - MPMX20_03218 0.69 +0.1
3,389,897 - MPMX20_03218 0.69 -1.5
3,389,953 + MPMX20_03218 0.82 -1.0
3,389,953 + MPMX20_03218 0.82 -0.4
3,389,956 - MPMX20_03218 0.82 -2.7
3,389,995 + -0.1
3,390,009 + -0.1
3,390,009 + -0.5
3,390,029 + -0.5
3,390,057 - -0.7
3,390,067 + -0.5
3,390,125 - +0.1
3,390,258 + +0.0
3,390,258 + +0.2
3,390,264 + -2.9
3,390,265 - -0.4
3,390,273 + +0.6
3,390,273 + -0.9
3,390,459 + -0.1
3,390,459 + +0.1
3,390,466 - -0.2
3,390,467 - -1.0
3,390,470 + -0.1
3,390,470 + -0.2
3,390,478 - +0.5
3,390,657 - +2.3
3,390,667 - -0.4
3,390,742 - -0.1
3,390,808 + MPMX20_03219 0.16 +0.3
3,390,816 - MPMX20_03219 0.17 -0.1
3,390,831 - MPMX20_03219 0.18 -0.7
3,390,837 + MPMX20_03219 0.19 +0.3
3,390,845 + MPMX20_03219 0.20 -0.4
3,390,845 + MPMX20_03219 0.20 +0.0
3,390,845 + MPMX20_03219 0.20 -1.0
3,390,853 - MPMX20_03219 0.21 +0.2
3,390,853 - MPMX20_03219 0.21 +0.3
3,390,853 - MPMX20_03219 0.21 -0.3
3,390,864 + MPMX20_03219 0.22 -0.3
3,390,864 + MPMX20_03219 0.22 +0.5
3,390,864 + MPMX20_03219 0.22 +0.3
3,390,864 + MPMX20_03219 0.22 -0.3
3,390,864 + MPMX20_03219 0.22 +0.4
3,390,864 + MPMX20_03219 0.22 +0.3
3,390,864 + MPMX20_03219 0.22 +0.1
3,390,864 + MPMX20_03219 0.22 -0.8
3,390,872 - MPMX20_03219 0.23 +0.5
3,390,872 - MPMX20_03219 0.23 -1.3
3,390,872 - MPMX20_03219 0.23 -0.4
3,390,888 + MPMX20_03219 0.24 -0.5
3,390,888 + MPMX20_03219 0.24 +0.1
3,390,896 - MPMX20_03219 0.25 +0.5
3,390,900 + MPMX20_03219 0.26 -0.7
3,390,900 + MPMX20_03219 0.26 +0.5
3,390,902 - MPMX20_03219 0.26 +0.3
3,390,906 + MPMX20_03219 0.26 +1.1
3,390,908 - MPMX20_03219 0.27 -0.9
3,390,908 - MPMX20_03219 0.27 -0.8
3,390,911 + MPMX20_03219 0.27 -1.7
3,390,918 + MPMX20_03219 0.28 -1.0
3,390,941 + MPMX20_03219 0.30 +0.1
3,390,956 + MPMX20_03219 0.32 -0.0
3,390,958 - MPMX20_03219 0.32 +0.2
3,390,971 + MPMX20_03219 0.34 -0.9
3,390,971 + MPMX20_03219 0.34 -0.2
3,390,996 + MPMX20_03219 0.36 -0.7
3,390,996 + MPMX20_03219 0.36 +0.8
3,390,997 + MPMX20_03219 0.36 -1.8
3,390,999 + MPMX20_03219 0.37 -1.6
3,391,022 + MPMX20_03219 0.39 +0.1

Or see this region's nucleotide sequence