Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03211

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03208 and MPMX20_03209 overlap by 4 nucleotidesMPMX20_03209 and MPMX20_03210 overlap by 4 nucleotidesMPMX20_03210 and MPMX20_03211 are separated by 10 nucleotidesMPMX20_03211 and MPMX20_03212 are separated by 13 nucleotidesMPMX20_03212 and MPMX20_03213 overlap by 4 nucleotides MPMX20_03208: MPMX20_03208 - NADH-quinone oxidoreductase subunit L, at 3,378,162 to 3,380,003 _03208 MPMX20_03209: MPMX20_03209 - NADH-quinone oxidoreductase subunit K, at 3,380,000 to 3,380,302 _03209 MPMX20_03210: MPMX20_03210 - NADH-quinone oxidoreductase subunit J, at 3,380,299 to 3,380,853 _03210 MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406 _03211 MPMX20_03212: MPMX20_03212 - NADH-quinone oxidoreductase subunit H, at 3,381,420 to 3,382,397 _03212 MPMX20_03213: MPMX20_03213 - NADH-quinone oxidoreductase subunit G, at 3,382,394 to 3,385,120 _03213 Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3379.886 kb on + strandat 3379.894 kb on - strandat 3379.955 kb on + strandat 3379.991 kb on - strandat 3380.054 kb on + strand, within MPMX20_03209at 3380.074 kb on + strand, within MPMX20_03209at 3380.138 kb on - strand, within MPMX20_03209at 3380.168 kb on + strand, within MPMX20_03209at 3380.244 kb on + strand, within MPMX20_03209at 3380.257 kb on - strand, within MPMX20_03209at 3380.397 kb on - strand, within MPMX20_03210at 3380.423 kb on - strand, within MPMX20_03210at 3380.447 kb on + strand, within MPMX20_03210at 3380.465 kb on - strand, within MPMX20_03210at 3380.480 kb on - strand, within MPMX20_03210at 3380.573 kb on + strand, within MPMX20_03210at 3380.573 kb on + strand, within MPMX20_03210at 3380.581 kb on - strand, within MPMX20_03210at 3380.581 kb on - strand, within MPMX20_03210at 3380.594 kb on - strand, within MPMX20_03210at 3380.594 kb on - strand, within MPMX20_03210at 3380.726 kb on - strand, within MPMX20_03210at 3380.726 kb on - strand, within MPMX20_03210at 3380.784 kb on - strand, within MPMX20_03210at 3380.788 kb on - strand, within MPMX20_03210at 3380.814 kb on + strandat 3380.863 kb on - strandat 3380.915 kb on + strandat 3380.915 kb on + strandat 3380.916 kb on - strandat 3380.960 kb on + strand, within MPMX20_03211at 3381.027 kb on + strand, within MPMX20_03211at 3381.087 kb on + strand, within MPMX20_03211at 3381.214 kb on + strand, within MPMX20_03211at 3381.222 kb on - strand, within MPMX20_03211at 3381.232 kb on + strand, within MPMX20_03211at 3381.232 kb on + strand, within MPMX20_03211at 3381.232 kb on + strand, within MPMX20_03211at 3381.240 kb on - strand, within MPMX20_03211at 3381.240 kb on - strand, within MPMX20_03211at 3381.268 kb on + strand, within MPMX20_03211at 3381.350 kb on + strand, within MPMX20_03211at 3381.352 kb on + strandat 3381.410 kb on + strandat 3381.528 kb on + strand, within MPMX20_03212at 3381.528 kb on + strand, within MPMX20_03212at 3381.528 kb on + strand, within MPMX20_03212at 3381.536 kb on - strand, within MPMX20_03212at 3381.536 kb on - strand, within MPMX20_03212at 3381.536 kb on - strand, within MPMX20_03212at 3381.536 kb on - strand, within MPMX20_03212at 3381.606 kb on + strand, within MPMX20_03212at 3381.633 kb on - strand, within MPMX20_03212at 3381.690 kb on - strand, within MPMX20_03212at 3381.772 kb on + strand, within MPMX20_03212at 3381.775 kb on - strand, within MPMX20_03212at 3381.782 kb on + strand, within MPMX20_03212at 3381.972 kb on - strand, within MPMX20_03212at 3382.059 kb on + strand, within MPMX20_03212at 3382.067 kb on - strand, within MPMX20_03212at 3382.177 kb on + strand, within MPMX20_03212at 3382.228 kb on - strand, within MPMX20_03212at 3382.242 kb on - strand, within MPMX20_03212at 3382.317 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,379,886 + -1.1
3,379,894 - -0.1
3,379,955 + +0.5
3,379,991 - -1.5
3,380,054 + MPMX20_03209 0.18 -3.0
3,380,074 + MPMX20_03209 0.24 -0.3
3,380,138 - MPMX20_03209 0.46 -0.1
3,380,168 + MPMX20_03209 0.55 -0.7
3,380,244 + MPMX20_03209 0.81 -1.5
3,380,257 - MPMX20_03209 0.85 -3.0
3,380,397 - MPMX20_03210 0.18 +0.1
3,380,423 - MPMX20_03210 0.22 -1.5
3,380,447 + MPMX20_03210 0.27 +0.9
3,380,465 - MPMX20_03210 0.30 +0.3
3,380,480 - MPMX20_03210 0.33 -0.4
3,380,573 + MPMX20_03210 0.49 -1.4
3,380,573 + MPMX20_03210 0.49 -0.8
3,380,581 - MPMX20_03210 0.51 -1.5
3,380,581 - MPMX20_03210 0.51 +0.3
3,380,594 - MPMX20_03210 0.53 -1.2
3,380,594 - MPMX20_03210 0.53 -0.0
3,380,726 - MPMX20_03210 0.77 +2.5
3,380,726 - MPMX20_03210 0.77 +0.7
3,380,784 - MPMX20_03210 0.87 -1.2
3,380,788 - MPMX20_03210 0.88 +0.6
3,380,814 + +0.1
3,380,863 - -0.6
3,380,915 + +2.2
3,380,915 + -2.4
3,380,916 - +1.5
3,380,960 + MPMX20_03211 0.18 -1.4
3,381,027 + MPMX20_03211 0.30 -1.1
3,381,087 + MPMX20_03211 0.41 -1.7
3,381,214 + MPMX20_03211 0.64 -1.4
3,381,222 - MPMX20_03211 0.66 -0.9
3,381,232 + MPMX20_03211 0.68 -1.3
3,381,232 + MPMX20_03211 0.68 -0.5
3,381,232 + MPMX20_03211 0.68 -0.5
3,381,240 - MPMX20_03211 0.69 -3.6
3,381,240 - MPMX20_03211 0.69 -0.7
3,381,268 + MPMX20_03211 0.74 -0.4
3,381,350 + MPMX20_03211 0.90 -0.5
3,381,352 + +0.5
3,381,410 + -0.7
3,381,528 + MPMX20_03212 0.11 +0.9
3,381,528 + MPMX20_03212 0.11 -1.5
3,381,528 + MPMX20_03212 0.11 -1.3
3,381,536 - MPMX20_03212 0.12 +0.5
3,381,536 - MPMX20_03212 0.12 +1.1
3,381,536 - MPMX20_03212 0.12 +0.9
3,381,536 - MPMX20_03212 0.12 +1.1
3,381,606 + MPMX20_03212 0.19 -0.5
3,381,633 - MPMX20_03212 0.22 -0.7
3,381,690 - MPMX20_03212 0.28 +0.6
3,381,772 + MPMX20_03212 0.36 -1.7
3,381,775 - MPMX20_03212 0.36 -1.3
3,381,782 + MPMX20_03212 0.37 -1.1
3,381,972 - MPMX20_03212 0.56 -0.1
3,382,059 + MPMX20_03212 0.65 +0.4
3,382,067 - MPMX20_03212 0.66 +1.5
3,382,177 + MPMX20_03212 0.77 -0.9
3,382,228 - MPMX20_03212 0.83 -0.5
3,382,242 - MPMX20_03212 0.84 -0.4
3,382,317 + -1.6

Or see this region's nucleotide sequence