Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03209

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03208 and MPMX20_03209 overlap by 4 nucleotidesMPMX20_03209 and MPMX20_03210 overlap by 4 nucleotidesMPMX20_03210 and MPMX20_03211 are separated by 10 nucleotides MPMX20_03208: MPMX20_03208 - NADH-quinone oxidoreductase subunit L, at 3,378,162 to 3,380,003 _03208 MPMX20_03209: MPMX20_03209 - NADH-quinone oxidoreductase subunit K, at 3,380,000 to 3,380,302 _03209 MPMX20_03210: MPMX20_03210 - NADH-quinone oxidoreductase subunit J, at 3,380,299 to 3,380,853 _03210 MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406 _03211 Position (kb) 3379 3380 3381Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3379.095 kb on - strand, within MPMX20_03208at 3379.127 kb on - strand, within MPMX20_03208at 3379.135 kb on - strand, within MPMX20_03208at 3379.240 kb on + strand, within MPMX20_03208at 3379.240 kb on + strand, within MPMX20_03208at 3379.323 kb on - strand, within MPMX20_03208at 3379.346 kb on + strand, within MPMX20_03208at 3379.346 kb on + strand, within MPMX20_03208at 3379.354 kb on - strand, within MPMX20_03208at 3379.390 kb on + strand, within MPMX20_03208at 3379.451 kb on + strand, within MPMX20_03208at 3379.462 kb on + strand, within MPMX20_03208at 3379.482 kb on + strand, within MPMX20_03208at 3379.568 kb on + strand, within MPMX20_03208at 3379.640 kb on + strand, within MPMX20_03208at 3379.756 kb on - strand, within MPMX20_03208at 3379.799 kb on + strand, within MPMX20_03208at 3379.886 kb on + strandat 3379.894 kb on - strandat 3379.955 kb on + strandat 3379.991 kb on - strandat 3380.054 kb on + strand, within MPMX20_03209at 3380.074 kb on + strand, within MPMX20_03209at 3380.138 kb on - strand, within MPMX20_03209at 3380.168 kb on + strand, within MPMX20_03209at 3380.244 kb on + strand, within MPMX20_03209at 3380.257 kb on - strand, within MPMX20_03209at 3380.397 kb on - strand, within MPMX20_03210at 3380.423 kb on - strand, within MPMX20_03210at 3380.447 kb on + strand, within MPMX20_03210at 3380.465 kb on - strand, within MPMX20_03210at 3380.480 kb on - strand, within MPMX20_03210at 3380.573 kb on + strand, within MPMX20_03210at 3380.573 kb on + strand, within MPMX20_03210at 3380.581 kb on - strand, within MPMX20_03210at 3380.581 kb on - strand, within MPMX20_03210at 3380.594 kb on - strand, within MPMX20_03210at 3380.594 kb on - strand, within MPMX20_03210at 3380.726 kb on - strand, within MPMX20_03210at 3380.726 kb on - strand, within MPMX20_03210at 3380.784 kb on - strand, within MPMX20_03210at 3380.788 kb on - strand, within MPMX20_03210at 3380.814 kb on + strandat 3380.863 kb on - strandat 3380.915 kb on + strandat 3380.915 kb on + strandat 3380.916 kb on - strandat 3380.960 kb on + strand, within MPMX20_03211at 3381.027 kb on + strand, within MPMX20_03211at 3381.087 kb on + strand, within MPMX20_03211at 3381.214 kb on + strand, within MPMX20_03211at 3381.222 kb on - strand, within MPMX20_03211at 3381.232 kb on + strand, within MPMX20_03211at 3381.232 kb on + strand, within MPMX20_03211at 3381.232 kb on + strand, within MPMX20_03211at 3381.240 kb on - strand, within MPMX20_03211at 3381.240 kb on - strand, within MPMX20_03211at 3381.268 kb on + strand, within MPMX20_03211

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,379,095 - MPMX20_03208 0.51 -0.7
3,379,127 - MPMX20_03208 0.52 -1.0
3,379,135 - MPMX20_03208 0.53 -0.2
3,379,240 + MPMX20_03208 0.59 +0.6
3,379,240 + MPMX20_03208 0.59 -0.5
3,379,323 - MPMX20_03208 0.63 +2.7
3,379,346 + MPMX20_03208 0.64 +1.3
3,379,346 + MPMX20_03208 0.64 -1.6
3,379,354 - MPMX20_03208 0.65 +0.1
3,379,390 + MPMX20_03208 0.67 -1.7
3,379,451 + MPMX20_03208 0.70 -1.7
3,379,462 + MPMX20_03208 0.71 -1.5
3,379,482 + MPMX20_03208 0.72 -1.0
3,379,568 + MPMX20_03208 0.76 -1.8
3,379,640 + MPMX20_03208 0.80 -1.3
3,379,756 - MPMX20_03208 0.87 -0.9
3,379,799 + MPMX20_03208 0.89 +0.1
3,379,886 + -1.1
3,379,894 - -0.1
3,379,955 + +0.5
3,379,991 - -1.5
3,380,054 + MPMX20_03209 0.18 -3.0
3,380,074 + MPMX20_03209 0.24 -0.3
3,380,138 - MPMX20_03209 0.46 -0.1
3,380,168 + MPMX20_03209 0.55 -0.7
3,380,244 + MPMX20_03209 0.81 -1.5
3,380,257 - MPMX20_03209 0.85 -3.0
3,380,397 - MPMX20_03210 0.18 +0.1
3,380,423 - MPMX20_03210 0.22 -1.5
3,380,447 + MPMX20_03210 0.27 +0.9
3,380,465 - MPMX20_03210 0.30 +0.3
3,380,480 - MPMX20_03210 0.33 -0.4
3,380,573 + MPMX20_03210 0.49 -1.4
3,380,573 + MPMX20_03210 0.49 -0.8
3,380,581 - MPMX20_03210 0.51 -1.5
3,380,581 - MPMX20_03210 0.51 +0.3
3,380,594 - MPMX20_03210 0.53 -1.2
3,380,594 - MPMX20_03210 0.53 -0.0
3,380,726 - MPMX20_03210 0.77 +2.5
3,380,726 - MPMX20_03210 0.77 +0.7
3,380,784 - MPMX20_03210 0.87 -1.2
3,380,788 - MPMX20_03210 0.88 +0.6
3,380,814 + +0.1
3,380,863 - -0.6
3,380,915 + +2.2
3,380,915 + -2.4
3,380,916 - +1.5
3,380,960 + MPMX20_03211 0.18 -1.4
3,381,027 + MPMX20_03211 0.30 -1.1
3,381,087 + MPMX20_03211 0.41 -1.7
3,381,214 + MPMX20_03211 0.64 -1.4
3,381,222 - MPMX20_03211 0.66 -0.9
3,381,232 + MPMX20_03211 0.68 -1.3
3,381,232 + MPMX20_03211 0.68 -0.5
3,381,232 + MPMX20_03211 0.68 -0.5
3,381,240 - MPMX20_03211 0.69 -3.6
3,381,240 - MPMX20_03211 0.69 -0.7
3,381,268 + MPMX20_03211 0.74 -0.4

Or see this region's nucleotide sequence