Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02915

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02913 and MPMX20_02914 are separated by 117 nucleotidesMPMX20_02914 and MPMX20_02915 are separated by 73 nucleotidesMPMX20_02915 and MPMX20_02916 are separated by 41 nucleotides MPMX20_02913: MPMX20_02913 - hypothetical protein, at 3,052,498 to 3,052,719 _02913 MPMX20_02914: MPMX20_02914 - HTH-type transcriptional regulator PrtR, at 3,052,837 to 3,053,547 _02914 MPMX20_02915: MPMX20_02915 - hypothetical protein, at 3,053,621 to 3,054,001 _02915 MPMX20_02916: MPMX20_02916 - hypothetical protein, at 3,054,043 to 3,054,252 _02916 Position (kb) 3053 3054 3055Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3052.647 kb on + strand, within MPMX20_02913at 3052.650 kb on + strand, within MPMX20_02913at 3052.818 kb on + strandat 3052.818 kb on + strandat 3053.591 kb on - strandat 3053.652 kb on - strandat 3053.652 kb on - strandat 3053.666 kb on - strand, within MPMX20_02915at 3053.668 kb on - strand, within MPMX20_02915at 3053.705 kb on + strand, within MPMX20_02915at 3053.752 kb on + strand, within MPMX20_02915at 3053.788 kb on - strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.799 kb on - strand, within MPMX20_02915at 3053.799 kb on - strand, within MPMX20_02915at 3053.799 kb on - strand, within MPMX20_02915at 3053.838 kb on + strand, within MPMX20_02915at 3053.853 kb on + strand, within MPMX20_02915at 3053.853 kb on + strand, within MPMX20_02915at 3053.858 kb on + strand, within MPMX20_02915at 3053.861 kb on - strand, within MPMX20_02915at 3053.861 kb on - strand, within MPMX20_02915at 3053.866 kb on - strand, within MPMX20_02915at 3053.907 kb on + strand, within MPMX20_02915at 3053.908 kb on + strand, within MPMX20_02915at 3053.912 kb on + strand, within MPMX20_02915at 3053.916 kb on + strand, within MPMX20_02915at 3053.920 kb on - strand, within MPMX20_02915at 3053.923 kb on + strand, within MPMX20_02915at 3053.947 kb on + strand, within MPMX20_02915at 3053.955 kb on - strand, within MPMX20_02915at 3053.955 kb on - strand, within MPMX20_02915at 3053.955 kb on - strand, within MPMX20_02915at 3053.959 kb on + strand, within MPMX20_02915at 3053.996 kb on + strandat 3053.996 kb on + strandat 3054.008 kb on + strandat 3054.016 kb on - strandat 3054.044 kb on - strandat 3054.044 kb on - strandat 3054.046 kb on + strandat 3054.047 kb on - strandat 3054.054 kb on - strandat 3054.130 kb on + strand, within MPMX20_02916at 3054.143 kb on - strand, within MPMX20_02916at 3054.143 kb on - strand, within MPMX20_02916at 3054.143 kb on - strand, within MPMX20_02916at 3054.149 kb on + strand, within MPMX20_02916at 3054.156 kb on + strand, within MPMX20_02916at 3054.220 kb on - strand, within MPMX20_02916at 3054.220 kb on - strand, within MPMX20_02916at 3054.249 kb on - strandat 3054.281 kb on + strandat 3054.289 kb on - strandat 3054.428 kb on + strandat 3054.477 kb on + strandat 3054.498 kb on + strandat 3054.506 kb on - strandat 3054.537 kb on - strandat 3054.592 kb on + strandat 3054.600 kb on - strandat 3054.625 kb on + strandat 3054.625 kb on + strandat 3054.633 kb on - strandat 3054.649 kb on + strandat 3054.671 kb on + strandat 3054.692 kb on - strandat 3054.692 kb on - strandat 3054.749 kb on + strandat 3054.762 kb on - strandat 3054.779 kb on - strandat 3054.796 kb on + strandat 3054.796 kb on + strandat 3054.796 kb on + strandat 3054.844 kb on - strandat 3054.861 kb on + strandat 3054.881 kb on + strandat 3054.907 kb on - strandat 3054.918 kb on + strandat 3054.918 kb on + strandat 3054.926 kb on - strandat 3054.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,052,647 + MPMX20_02913 0.67 -0.1
3,052,650 + MPMX20_02913 0.68 -0.2
3,052,818 + -0.8
3,052,818 + -1.3
3,053,591 - +0.0
3,053,652 - -0.6
3,053,652 - -0.7
3,053,666 - MPMX20_02915 0.12 -0.9
3,053,668 - MPMX20_02915 0.12 -0.5
3,053,705 + MPMX20_02915 0.22 -0.8
3,053,752 + MPMX20_02915 0.34 -1.3
3,053,788 - MPMX20_02915 0.44 -1.0
3,053,791 + MPMX20_02915 0.45 -0.9
3,053,791 + MPMX20_02915 0.45 -1.0
3,053,791 + MPMX20_02915 0.45 -0.0
3,053,791 + MPMX20_02915 0.45 -1.2
3,053,791 + MPMX20_02915 0.45 -1.2
3,053,791 + MPMX20_02915 0.45 -0.8
3,053,791 + MPMX20_02915 0.45 -0.9
3,053,791 + MPMX20_02915 0.45 -1.3
3,053,791 + MPMX20_02915 0.45 -1.4
3,053,791 + MPMX20_02915 0.45 -1.4
3,053,799 - MPMX20_02915 0.47 -1.2
3,053,799 - MPMX20_02915 0.47 -1.3
3,053,799 - MPMX20_02915 0.47 -0.2
3,053,838 + MPMX20_02915 0.57 -1.3
3,053,853 + MPMX20_02915 0.61 -1.5
3,053,853 + MPMX20_02915 0.61 -0.9
3,053,858 + MPMX20_02915 0.62 -2.4
3,053,861 - MPMX20_02915 0.63 -1.4
3,053,861 - MPMX20_02915 0.63 -3.4
3,053,866 - MPMX20_02915 0.64 -0.8
3,053,907 + MPMX20_02915 0.75 -1.6
3,053,908 + MPMX20_02915 0.75 -0.9
3,053,912 + MPMX20_02915 0.76 -0.7
3,053,916 + MPMX20_02915 0.77 -0.3
3,053,920 - MPMX20_02915 0.78 -0.6
3,053,923 + MPMX20_02915 0.79 -2.1
3,053,947 + MPMX20_02915 0.86 -1.1
3,053,955 - MPMX20_02915 0.88 +0.2
3,053,955 - MPMX20_02915 0.88 -0.8
3,053,955 - MPMX20_02915 0.88 -2.7
3,053,959 + MPMX20_02915 0.89 -0.4
3,053,996 + +1.2
3,053,996 + -1.6
3,054,008 + -1.2
3,054,016 - -0.7
3,054,044 - -1.1
3,054,044 - -1.5
3,054,046 + -1.4
3,054,047 - -3.8
3,054,054 - -0.5
3,054,130 + MPMX20_02916 0.41 -1.6
3,054,143 - MPMX20_02916 0.48 -1.0
3,054,143 - MPMX20_02916 0.48 -1.1
3,054,143 - MPMX20_02916 0.48 -0.3
3,054,149 + MPMX20_02916 0.50 -1.3
3,054,156 + MPMX20_02916 0.54 -1.6
3,054,220 - MPMX20_02916 0.84 -1.8
3,054,220 - MPMX20_02916 0.84 -2.0
3,054,249 - -0.9
3,054,281 + -1.0
3,054,289 - +0.3
3,054,428 + -2.0
3,054,477 + -0.5
3,054,498 + -1.1
3,054,506 - -1.0
3,054,537 - -0.4
3,054,592 + -0.6
3,054,600 - -2.0
3,054,625 + -0.8
3,054,625 + -1.2
3,054,633 - -1.1
3,054,649 + -2.1
3,054,671 + -0.6
3,054,692 - -1.4
3,054,692 - -1.2
3,054,749 + -1.7
3,054,762 - -1.5
3,054,779 - -1.3
3,054,796 + -1.6
3,054,796 + -2.4
3,054,796 + -0.9
3,054,844 - -1.1
3,054,861 + -1.0
3,054,881 + -0.4
3,054,907 - -0.4
3,054,918 + -0.9
3,054,918 + -1.2
3,054,926 - -0.7
3,054,953 + -0.0

Or see this region's nucleotide sequence