Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02913 and MPMX20_02914 are separated by 117 nucleotides MPMX20_02914 and MPMX20_02915 are separated by 73 nucleotides MPMX20_02915 and MPMX20_02916 are separated by 41 nucleotides
MPMX20_02913: MPMX20_02913 - hypothetical protein, at 3,052,498 to 3,052,719
_02913
MPMX20_02914: MPMX20_02914 - HTH-type transcriptional regulator PrtR, at 3,052,837 to 3,053,547
_02914
MPMX20_02915: MPMX20_02915 - hypothetical protein, at 3,053,621 to 3,054,001
_02915
MPMX20_02916: MPMX20_02916 - hypothetical protein, at 3,054,043 to 3,054,252
_02916
Position (kb)
3053
3054
3055 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3052.647 kb on + strand, within MPMX20_02913 at 3052.650 kb on + strand, within MPMX20_02913 at 3052.818 kb on + strand at 3052.818 kb on + strand at 3053.591 kb on - strand at 3053.652 kb on - strand at 3053.652 kb on - strand at 3053.666 kb on - strand, within MPMX20_02915 at 3053.668 kb on - strand, within MPMX20_02915 at 3053.705 kb on + strand, within MPMX20_02915 at 3053.752 kb on + strand, within MPMX20_02915 at 3053.788 kb on - strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.791 kb on + strand, within MPMX20_02915 at 3053.799 kb on - strand, within MPMX20_02915 at 3053.799 kb on - strand, within MPMX20_02915 at 3053.799 kb on - strand, within MPMX20_02915 at 3053.838 kb on + strand, within MPMX20_02915 at 3053.853 kb on + strand, within MPMX20_02915 at 3053.853 kb on + strand, within MPMX20_02915 at 3053.858 kb on + strand, within MPMX20_02915 at 3053.861 kb on - strand, within MPMX20_02915 at 3053.861 kb on - strand, within MPMX20_02915 at 3053.866 kb on - strand, within MPMX20_02915 at 3053.907 kb on + strand, within MPMX20_02915 at 3053.908 kb on + strand, within MPMX20_02915 at 3053.912 kb on + strand, within MPMX20_02915 at 3053.916 kb on + strand, within MPMX20_02915 at 3053.920 kb on - strand, within MPMX20_02915 at 3053.923 kb on + strand, within MPMX20_02915 at 3053.947 kb on + strand, within MPMX20_02915 at 3053.955 kb on - strand, within MPMX20_02915 at 3053.955 kb on - strand, within MPMX20_02915 at 3053.955 kb on - strand, within MPMX20_02915 at 3053.959 kb on + strand, within MPMX20_02915 at 3053.996 kb on + strand at 3053.996 kb on + strand at 3054.008 kb on + strand at 3054.016 kb on - strand at 3054.044 kb on - strand at 3054.044 kb on - strand at 3054.046 kb on + strand at 3054.047 kb on - strand at 3054.054 kb on - strand at 3054.130 kb on + strand, within MPMX20_02916 at 3054.143 kb on - strand, within MPMX20_02916 at 3054.143 kb on - strand, within MPMX20_02916 at 3054.143 kb on - strand, within MPMX20_02916 at 3054.149 kb on + strand, within MPMX20_02916 at 3054.156 kb on + strand, within MPMX20_02916 at 3054.220 kb on - strand, within MPMX20_02916 at 3054.220 kb on - strand, within MPMX20_02916 at 3054.249 kb on - strand at 3054.281 kb on + strand at 3054.289 kb on - strand at 3054.428 kb on + strand at 3054.477 kb on + strand at 3054.498 kb on + strand at 3054.506 kb on - strand at 3054.537 kb on - strand at 3054.592 kb on + strand at 3054.600 kb on - strand at 3054.625 kb on + strand at 3054.625 kb on + strand at 3054.633 kb on - strand at 3054.649 kb on + strand at 3054.671 kb on + strand at 3054.692 kb on - strand at 3054.692 kb on - strand at 3054.749 kb on + strand at 3054.762 kb on - strand at 3054.779 kb on - strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.844 kb on - strand at 3054.861 kb on + strand at 3054.881 kb on + strand at 3054.907 kb on - strand at 3054.918 kb on + strand at 3054.918 kb on + strand at 3054.926 kb on - strand at 3054.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,052,647 + MPMX20_02913 0.67 -0.1 3,052,650 + MPMX20_02913 0.68 -0.2 3,052,818 + -0.8 3,052,818 + -1.3 3,053,591 - +0.0 3,053,652 - -0.6 3,053,652 - -0.7 3,053,666 - MPMX20_02915 0.12 -0.9 3,053,668 - MPMX20_02915 0.12 -0.5 3,053,705 + MPMX20_02915 0.22 -0.8 3,053,752 + MPMX20_02915 0.34 -1.3 3,053,788 - MPMX20_02915 0.44 -1.0 3,053,791 + MPMX20_02915 0.45 -0.9 3,053,791 + MPMX20_02915 0.45 -1.0 3,053,791 + MPMX20_02915 0.45 -0.0 3,053,791 + MPMX20_02915 0.45 -1.2 3,053,791 + MPMX20_02915 0.45 -1.2 3,053,791 + MPMX20_02915 0.45 -0.8 3,053,791 + MPMX20_02915 0.45 -0.9 3,053,791 + MPMX20_02915 0.45 -1.3 3,053,791 + MPMX20_02915 0.45 -1.4 3,053,791 + MPMX20_02915 0.45 -1.4 3,053,799 - MPMX20_02915 0.47 -1.2 3,053,799 - MPMX20_02915 0.47 -1.3 3,053,799 - MPMX20_02915 0.47 -0.2 3,053,838 + MPMX20_02915 0.57 -1.3 3,053,853 + MPMX20_02915 0.61 -1.5 3,053,853 + MPMX20_02915 0.61 -0.9 3,053,858 + MPMX20_02915 0.62 -2.4 3,053,861 - MPMX20_02915 0.63 -1.4 3,053,861 - MPMX20_02915 0.63 -3.4 3,053,866 - MPMX20_02915 0.64 -0.8 3,053,907 + MPMX20_02915 0.75 -1.6 3,053,908 + MPMX20_02915 0.75 -0.9 3,053,912 + MPMX20_02915 0.76 -0.7 3,053,916 + MPMX20_02915 0.77 -0.3 3,053,920 - MPMX20_02915 0.78 -0.6 3,053,923 + MPMX20_02915 0.79 -2.1 3,053,947 + MPMX20_02915 0.86 -1.1 3,053,955 - MPMX20_02915 0.88 +0.2 3,053,955 - MPMX20_02915 0.88 -0.8 3,053,955 - MPMX20_02915 0.88 -2.7 3,053,959 + MPMX20_02915 0.89 -0.4 3,053,996 + +1.2 3,053,996 + -1.6 3,054,008 + -1.2 3,054,016 - -0.7 3,054,044 - -1.1 3,054,044 - -1.5 3,054,046 + -1.4 3,054,047 - -3.8 3,054,054 - -0.5 3,054,130 + MPMX20_02916 0.41 -1.6 3,054,143 - MPMX20_02916 0.48 -1.0 3,054,143 - MPMX20_02916 0.48 -1.1 3,054,143 - MPMX20_02916 0.48 -0.3 3,054,149 + MPMX20_02916 0.50 -1.3 3,054,156 + MPMX20_02916 0.54 -1.6 3,054,220 - MPMX20_02916 0.84 -1.8 3,054,220 - MPMX20_02916 0.84 -2.0 3,054,249 - -0.9 3,054,281 + -1.0 3,054,289 - +0.3 3,054,428 + -2.0 3,054,477 + -0.5 3,054,498 + -1.1 3,054,506 - -1.0 3,054,537 - -0.4 3,054,592 + -0.6 3,054,600 - -2.0 3,054,625 + -0.8 3,054,625 + -1.2 3,054,633 - -1.1 3,054,649 + -2.1 3,054,671 + -0.6 3,054,692 - -1.4 3,054,692 - -1.2 3,054,749 + -1.7 3,054,762 - -1.5 3,054,779 - -1.3 3,054,796 + -1.6 3,054,796 + -2.4 3,054,796 + -0.9 3,054,844 - -1.1 3,054,861 + -1.0 3,054,881 + -0.4 3,054,907 - -0.4 3,054,918 + -0.9 3,054,918 + -1.2 3,054,926 - -0.7 3,054,953 + -0.0
Or see this region's nucleotide sequence