Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02904

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02901 and MPMX20_02902 overlap by 8 nucleotidesMPMX20_02902 and MPMX20_02903 overlap by 4 nucleotidesMPMX20_02903 and MPMX20_02904 overlap by 1 nucleotidesMPMX20_02904 and MPMX20_02905 are separated by 186 nucleotidesMPMX20_02905 and MPMX20_02906 are separated by 3 nucleotides MPMX20_02901: MPMX20_02901 - hypothetical protein, at 3,046,469 to 3,047,080 _02901 MPMX20_02902: MPMX20_02902 - Serine/threonine-protein phosphatase 1, at 3,047,073 to 3,047,741 _02902 MPMX20_02903: MPMX20_02903 - hypothetical protein, at 3,047,738 to 3,047,908 _02903 MPMX20_02904: MPMX20_02904 - hypothetical protein, at 3,047,908 to 3,048,363 _02904 MPMX20_02905: MPMX20_02905 - hypothetical protein, at 3,048,550 to 3,049,257 _02905 MPMX20_02906: MPMX20_02906 - hypothetical protein, at 3,049,261 to 3,049,449 _02906 Position (kb) 3047 3048 3049Strain fitness (log2 ratio) -3 -2 -1 0 1at 3046.918 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.975 kb on + strand, within MPMX20_02901at 3046.983 kb on - strand, within MPMX20_02901at 3046.987 kb on + strand, within MPMX20_02901at 3046.993 kb on - strand, within MPMX20_02901at 3046.995 kb on - strand, within MPMX20_02901at 3047.044 kb on - strandat 3047.088 kb on + strandat 3047.089 kb on + strandat 3047.097 kb on - strandat 3047.097 kb on - strandat 3047.097 kb on - strandat 3047.168 kb on - strand, within MPMX20_02902at 3047.209 kb on + strand, within MPMX20_02902at 3047.235 kb on - strand, within MPMX20_02902at 3047.249 kb on + strand, within MPMX20_02902at 3047.249 kb on + strand, within MPMX20_02902at 3047.313 kb on + strand, within MPMX20_02902at 3047.401 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.530 kb on + strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.538 kb on - strand, within MPMX20_02902at 3047.563 kb on - strand, within MPMX20_02902at 3047.563 kb on - strand, within MPMX20_02902at 3047.624 kb on - strand, within MPMX20_02902at 3047.655 kb on + strand, within MPMX20_02902at 3047.663 kb on + strand, within MPMX20_02902at 3047.681 kb on - strandat 3047.745 kb on + strandat 3047.796 kb on + strand, within MPMX20_02903at 3047.827 kb on + strand, within MPMX20_02903at 3047.896 kb on + strandat 3047.899 kb on - strandat 3047.899 kb on - strandat 3047.914 kb on - strandat 3047.940 kb on + strandat 3047.960 kb on + strand, within MPMX20_02904at 3047.967 kb on - strand, within MPMX20_02904at 3047.997 kb on - strand, within MPMX20_02904at 3048.014 kb on - strand, within MPMX20_02904at 3048.018 kb on + strand, within MPMX20_02904at 3048.084 kb on + strand, within MPMX20_02904at 3048.084 kb on + strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.092 kb on - strand, within MPMX20_02904at 3048.097 kb on - strand, within MPMX20_02904at 3048.097 kb on - strand, within MPMX20_02904at 3048.118 kb on + strand, within MPMX20_02904at 3048.126 kb on - strand, within MPMX20_02904at 3048.142 kb on - strand, within MPMX20_02904at 3048.169 kb on - strand, within MPMX20_02904at 3048.169 kb on - strand, within MPMX20_02904at 3048.212 kb on - strand, within MPMX20_02904at 3048.253 kb on - strand, within MPMX20_02904at 3048.253 kb on - strand, within MPMX20_02904at 3048.259 kb on - strand, within MPMX20_02904at 3048.259 kb on - strand, within MPMX20_02904at 3048.379 kb on - strandat 3048.429 kb on + strandat 3048.464 kb on + strandat 3048.493 kb on + strandat 3048.496 kb on - strandat 3048.501 kb on - strandat 3048.569 kb on + strandat 3048.569 kb on + strandat 3048.569 kb on + strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.577 kb on - strandat 3048.584 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.594 kb on + strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.602 kb on - strandat 3048.625 kb on + strand, within MPMX20_02905at 3048.643 kb on - strand, within MPMX20_02905at 3048.659 kb on - strand, within MPMX20_02905at 3048.659 kb on - strand, within MPMX20_02905at 3048.672 kb on + strand, within MPMX20_02905at 3048.740 kb on - strand, within MPMX20_02905at 3048.740 kb on - strand, within MPMX20_02905at 3048.837 kb on - strand, within MPMX20_02905at 3048.839 kb on + strand, within MPMX20_02905at 3048.902 kb on + strand, within MPMX20_02905at 3048.902 kb on + strand, within MPMX20_02905at 3048.963 kb on - strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3048.992 kb on + strand, within MPMX20_02905at 3049.000 kb on - strand, within MPMX20_02905at 3049.002 kb on - strand, within MPMX20_02905at 3049.162 kb on + strand, within MPMX20_02905at 3049.167 kb on + strand, within MPMX20_02905at 3049.260 kb on + strandat 3049.260 kb on - strandat 3049.267 kb on - strandat 3049.272 kb on - strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.279 kb on + strandat 3049.285 kb on + strand, within MPMX20_02906at 3049.285 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.287 kb on - strand, within MPMX20_02906at 3049.293 kb on - strand, within MPMX20_02906at 3049.293 kb on - strand, within MPMX20_02906at 3049.357 kb on + strand, within MPMX20_02906

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,046,918 + MPMX20_02901 0.73 -1.3
3,046,938 + MPMX20_02901 0.77 -3.5
3,046,938 + MPMX20_02901 0.77 -1.4
3,046,938 + MPMX20_02901 0.77 -1.7
3,046,946 - MPMX20_02901 0.78 -1.3
3,046,946 - MPMX20_02901 0.78 -0.6
3,046,946 - MPMX20_02901 0.78 -1.5
3,046,946 - MPMX20_02901 0.78 -1.5
3,046,946 - MPMX20_02901 0.78 -1.4
3,046,946 - MPMX20_02901 0.78 -1.4
3,046,946 - MPMX20_02901 0.78 -0.3
3,046,975 + MPMX20_02901 0.83 -2.3
3,046,983 - MPMX20_02901 0.84 -0.8
3,046,987 + MPMX20_02901 0.85 -3.2
3,046,993 - MPMX20_02901 0.86 -0.4
3,046,995 - MPMX20_02901 0.86 -1.6
3,047,044 - -1.4
3,047,088 + -1.7
3,047,089 + -1.9
3,047,097 - -1.2
3,047,097 - -1.1
3,047,097 - -2.4
3,047,168 - MPMX20_02902 0.14 -2.1
3,047,209 + MPMX20_02902 0.20 -2.5
3,047,235 - MPMX20_02902 0.24 -1.6
3,047,249 + MPMX20_02902 0.26 -1.2
3,047,249 + MPMX20_02902 0.26 -1.7
3,047,313 + MPMX20_02902 0.36 -1.9
3,047,401 + MPMX20_02902 0.49 -2.7
3,047,530 + MPMX20_02902 0.68 -1.8
3,047,530 + MPMX20_02902 0.68 -0.9
3,047,530 + MPMX20_02902 0.68 -1.9
3,047,530 + MPMX20_02902 0.68 -1.0
3,047,530 + MPMX20_02902 0.68 -2.2
3,047,530 + MPMX20_02902 0.68 -1.8
3,047,530 + MPMX20_02902 0.68 -2.2
3,047,538 - MPMX20_02902 0.70 -0.9
3,047,538 - MPMX20_02902 0.70 -1.7
3,047,538 - MPMX20_02902 0.70 -1.3
3,047,538 - MPMX20_02902 0.70 -1.2
3,047,563 - MPMX20_02902 0.73 -1.7
3,047,563 - MPMX20_02902 0.73 -1.7
3,047,624 - MPMX20_02902 0.82 -0.4
3,047,655 + MPMX20_02902 0.87 -0.7
3,047,663 + MPMX20_02902 0.88 -1.7
3,047,681 - -0.9
3,047,745 + -1.2
3,047,796 + MPMX20_02903 0.34 -1.4
3,047,827 + MPMX20_02903 0.52 -2.1
3,047,896 + -1.4
3,047,899 - -1.4
3,047,899 - -1.4
3,047,914 - -0.2
3,047,940 + -2.1
3,047,960 + MPMX20_02904 0.11 -1.4
3,047,967 - MPMX20_02904 0.13 -0.7
3,047,997 - MPMX20_02904 0.20 -1.0
3,048,014 - MPMX20_02904 0.23 +0.4
3,048,018 + MPMX20_02904 0.24 -2.4
3,048,084 + MPMX20_02904 0.39 -1.8
3,048,084 + MPMX20_02904 0.39 -1.7
3,048,092 - MPMX20_02904 0.40 -1.6
3,048,092 - MPMX20_02904 0.40 -0.5
3,048,092 - MPMX20_02904 0.40 -0.1
3,048,092 - MPMX20_02904 0.40 -0.9
3,048,097 - MPMX20_02904 0.41 -1.3
3,048,097 - MPMX20_02904 0.41 -0.6
3,048,118 + MPMX20_02904 0.46 -1.7
3,048,126 - MPMX20_02904 0.48 -1.4
3,048,142 - MPMX20_02904 0.51 -0.5
3,048,169 - MPMX20_02904 0.57 -0.9
3,048,169 - MPMX20_02904 0.57 -0.7
3,048,212 - MPMX20_02904 0.67 -1.1
3,048,253 - MPMX20_02904 0.76 -0.8
3,048,253 - MPMX20_02904 0.76 -1.5
3,048,259 - MPMX20_02904 0.77 -0.8
3,048,259 - MPMX20_02904 0.77 -0.0
3,048,379 - -2.0
3,048,429 + -2.0
3,048,464 + -1.4
3,048,493 + -1.6
3,048,496 - -0.6
3,048,501 - -1.1
3,048,569 + -1.2
3,048,569 + -1.5
3,048,569 + -1.3
3,048,577 - -0.6
3,048,577 - -3.1
3,048,577 - -2.0
3,048,577 - -1.3
3,048,584 + -1.5
3,048,594 + -0.8
3,048,594 + -0.9
3,048,594 + -0.8
3,048,594 + -1.3
3,048,594 + -1.0
3,048,602 - -2.1
3,048,602 - +0.6
3,048,602 - -1.1
3,048,602 - -1.3
3,048,625 + MPMX20_02905 0.11 -3.7
3,048,643 - MPMX20_02905 0.13 -0.9
3,048,659 - MPMX20_02905 0.15 +0.1
3,048,659 - MPMX20_02905 0.15 -3.4
3,048,672 + MPMX20_02905 0.17 -1.0
3,048,740 - MPMX20_02905 0.27 -1.0
3,048,740 - MPMX20_02905 0.27 -1.6
3,048,837 - MPMX20_02905 0.41 -1.3
3,048,839 + MPMX20_02905 0.41 -1.0
3,048,902 + MPMX20_02905 0.50 -1.3
3,048,902 + MPMX20_02905 0.50 -0.9
3,048,963 - MPMX20_02905 0.58 -2.3
3,048,992 + MPMX20_02905 0.62 -1.4
3,048,992 + MPMX20_02905 0.62 +0.5
3,048,992 + MPMX20_02905 0.62 -1.1
3,048,992 + MPMX20_02905 0.62 -1.5
3,048,992 + MPMX20_02905 0.62 -0.9
3,048,992 + MPMX20_02905 0.62 -1.6
3,048,992 + MPMX20_02905 0.62 -1.2
3,049,000 - MPMX20_02905 0.64 -1.8
3,049,002 - MPMX20_02905 0.64 -1.4
3,049,162 + MPMX20_02905 0.86 -1.1
3,049,167 + MPMX20_02905 0.87 -1.2
3,049,260 + -1.2
3,049,260 - -1.1
3,049,267 - -2.2
3,049,272 - -1.5
3,049,279 + -1.4
3,049,279 + +0.2
3,049,279 + -0.7
3,049,279 + -0.8
3,049,279 + -1.2
3,049,285 + MPMX20_02906 0.13 -1.7
3,049,285 - MPMX20_02906 0.13 -1.1
3,049,287 - MPMX20_02906 0.14 -1.1
3,049,287 - MPMX20_02906 0.14 -1.4
3,049,287 - MPMX20_02906 0.14 +0.6
3,049,287 - MPMX20_02906 0.14 -0.6
3,049,293 - MPMX20_02906 0.17 -1.4
3,049,293 - MPMX20_02906 0.17 -1.9
3,049,357 + MPMX20_02906 0.51 -1.1

Or see this region's nucleotide sequence