Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02899

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02897 and MPMX20_02898 overlap by 4 nucleotidesMPMX20_02898 and MPMX20_02899 are separated by 471 nucleotidesMPMX20_02899 and MPMX20_02900 overlap by 4 nucleotidesMPMX20_02900 and MPMX20_02901 overlap by 4 nucleotidesMPMX20_02901 and MPMX20_02902 overlap by 8 nucleotides MPMX20_02897: MPMX20_02897 - hypothetical protein, at 3,044,501 to 3,044,776 _02897 MPMX20_02898: MPMX20_02898 - hypothetical protein, at 3,044,773 to 3,045,174 _02898 MPMX20_02899: MPMX20_02899 - hypothetical protein, at 3,045,646 to 3,046,335 _02899 MPMX20_02900: MPMX20_02900 - putative protein YlcG, at 3,046,332 to 3,046,472 _02900 MPMX20_02901: MPMX20_02901 - hypothetical protein, at 3,046,469 to 3,047,080 _02901 MPMX20_02902: MPMX20_02902 - Serine/threonine-protein phosphatase 1, at 3,047,073 to 3,047,741 _02902 Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3044.657 kb on + strand, within MPMX20_02897at 3044.657 kb on + strand, within MPMX20_02897at 3044.660 kb on - strand, within MPMX20_02897at 3044.665 kb on - strand, within MPMX20_02897at 3044.665 kb on - strand, within MPMX20_02897at 3044.665 kb on - strand, within MPMX20_02897at 3044.670 kb on + strand, within MPMX20_02897at 3044.784 kb on - strandat 3044.801 kb on - strandat 3044.801 kb on - strandat 3044.887 kb on - strand, within MPMX20_02898at 3044.889 kb on + strand, within MPMX20_02898at 3044.897 kb on - strand, within MPMX20_02898at 3044.897 kb on - strand, within MPMX20_02898at 3044.897 kb on - strand, within MPMX20_02898at 3044.966 kb on + strand, within MPMX20_02898at 3044.966 kb on + strand, within MPMX20_02898at 3044.968 kb on + strand, within MPMX20_02898at 3044.974 kb on - strand, within MPMX20_02898at 3045.002 kb on + strand, within MPMX20_02898at 3045.010 kb on - strand, within MPMX20_02898at 3045.013 kb on + strand, within MPMX20_02898at 3045.038 kb on - strand, within MPMX20_02898at 3045.038 kb on - strand, within MPMX20_02898at 3045.045 kb on - strand, within MPMX20_02898at 3045.046 kb on + strand, within MPMX20_02898at 3045.046 kb on + strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.078 kb on - strand, within MPMX20_02898at 3045.114 kb on + strand, within MPMX20_02898at 3045.115 kb on + strand, within MPMX20_02898at 3045.122 kb on - strand, within MPMX20_02898at 3045.122 kb on - strand, within MPMX20_02898at 3045.156 kb on - strandat 3045.156 kb on - strandat 3045.195 kb on + strandat 3045.195 kb on + strandat 3045.203 kb on - strandat 3045.283 kb on + strandat 3045.355 kb on - strandat 3045.406 kb on + strandat 3045.412 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.499 kb on - strandat 3045.499 kb on - strandat 3045.499 kb on - strandat 3045.499 kb on - strandat 3045.501 kb on + strandat 3045.501 kb on + strandat 3045.501 kb on + strandat 3045.501 kb on + strandat 3045.501 kb on + strandat 3045.501 kb on + strandat 3045.509 kb on - strandat 3045.509 kb on - strandat 3045.509 kb on - strandat 3045.514 kb on - strandat 3045.556 kb on + strandat 3045.563 kb on + strandat 3045.736 kb on - strand, within MPMX20_02899at 3045.738 kb on + strand, within MPMX20_02899at 3045.738 kb on + strand, within MPMX20_02899at 3045.738 kb on + strand, within MPMX20_02899at 3045.746 kb on - strand, within MPMX20_02899at 3045.808 kb on + strand, within MPMX20_02899at 3045.886 kb on + strand, within MPMX20_02899at 3045.942 kb on + strand, within MPMX20_02899at 3045.961 kb on + strand, within MPMX20_02899at 3045.964 kb on - strand, within MPMX20_02899at 3046.073 kb on - strand, within MPMX20_02899at 3046.109 kb on + strand, within MPMX20_02899at 3046.126 kb on + strand, within MPMX20_02899at 3046.273 kb on + strandat 3046.286 kb on - strandat 3046.286 kb on - strandat 3046.476 kb on + strandat 3046.506 kb on + strandat 3046.509 kb on - strandat 3046.514 kb on - strandat 3046.514 kb on - strandat 3046.527 kb on + strandat 3046.545 kb on - strand, within MPMX20_02901at 3046.615 kb on - strand, within MPMX20_02901at 3046.627 kb on + strand, within MPMX20_02901at 3046.627 kb on + strand, within MPMX20_02901at 3046.635 kb on - strand, within MPMX20_02901at 3046.665 kb on - strand, within MPMX20_02901at 3046.671 kb on + strand, within MPMX20_02901at 3046.672 kb on - strand, within MPMX20_02901at 3046.697 kb on + strand, within MPMX20_02901at 3046.699 kb on + strand, within MPMX20_02901at 3046.699 kb on + strand, within MPMX20_02901at 3046.707 kb on - strand, within MPMX20_02901at 3046.768 kb on + strand, within MPMX20_02901at 3046.776 kb on - strand, within MPMX20_02901at 3046.785 kb on + strand, within MPMX20_02901at 3046.862 kb on - strand, within MPMX20_02901at 3046.881 kb on - strand, within MPMX20_02901at 3046.881 kb on - strand, within MPMX20_02901at 3046.918 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.938 kb on + strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.946 kb on - strand, within MPMX20_02901at 3046.975 kb on + strand, within MPMX20_02901at 3046.983 kb on - strand, within MPMX20_02901at 3046.987 kb on + strand, within MPMX20_02901at 3046.993 kb on - strand, within MPMX20_02901at 3046.995 kb on - strand, within MPMX20_02901at 3047.044 kb on - strandat 3047.088 kb on + strandat 3047.089 kb on + strandat 3047.097 kb on - strandat 3047.097 kb on - strandat 3047.097 kb on - strandat 3047.168 kb on - strand, within MPMX20_02902at 3047.209 kb on + strand, within MPMX20_02902at 3047.235 kb on - strand, within MPMX20_02902at 3047.249 kb on + strand, within MPMX20_02902at 3047.249 kb on + strand, within MPMX20_02902at 3047.313 kb on + strand, within MPMX20_02902

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
remove
3,044,657 + MPMX20_02897 0.57 -0.0
3,044,657 + MPMX20_02897 0.57 -0.8
3,044,660 - MPMX20_02897 0.58 -0.9
3,044,665 - MPMX20_02897 0.59 -1.6
3,044,665 - MPMX20_02897 0.59 -1.8
3,044,665 - MPMX20_02897 0.59 -1.7
3,044,670 + MPMX20_02897 0.61 -1.0
3,044,784 - -2.0
3,044,801 - -2.5
3,044,801 - -3.7
3,044,887 - MPMX20_02898 0.28 -2.0
3,044,889 + MPMX20_02898 0.29 -2.1
3,044,897 - MPMX20_02898 0.31 -2.9
3,044,897 - MPMX20_02898 0.31 -2.6
3,044,897 - MPMX20_02898 0.31 -1.7
3,044,966 + MPMX20_02898 0.48 -1.0
3,044,966 + MPMX20_02898 0.48 -2.5
3,044,968 + MPMX20_02898 0.49 -1.7
3,044,974 - MPMX20_02898 0.50 -1.0
3,045,002 + MPMX20_02898 0.57 -2.0
3,045,010 - MPMX20_02898 0.59 -3.6
3,045,013 + MPMX20_02898 0.60 -1.8
3,045,038 - MPMX20_02898 0.66 -1.6
3,045,038 - MPMX20_02898 0.66 -1.6
3,045,045 - MPMX20_02898 0.68 -2.2
3,045,046 + MPMX20_02898 0.68 -1.6
3,045,046 + MPMX20_02898 0.68 -2.0
3,045,054 - MPMX20_02898 0.70 -1.8
3,045,054 - MPMX20_02898 0.70 -3.2
3,045,054 - MPMX20_02898 0.70 -2.7
3,045,054 - MPMX20_02898 0.70 -1.9
3,045,078 - MPMX20_02898 0.76 -2.3
3,045,114 + MPMX20_02898 0.85 -2.5
3,045,115 + MPMX20_02898 0.85 -2.9
3,045,122 - MPMX20_02898 0.87 -1.8
3,045,122 - MPMX20_02898 0.87 -2.5
3,045,156 - -1.9
3,045,156 - -1.9
3,045,195 + -1.7
3,045,195 + -1.0
3,045,203 - -0.5
3,045,283 + -1.0
3,045,355 - -0.8
3,045,406 + -2.1
3,045,412 + -0.5
3,045,491 + -1.6
3,045,491 + +0.6
3,045,491 + -1.1
3,045,491 + -1.7
3,045,491 + -0.7
3,045,491 + -1.6
3,045,491 + -1.4
3,045,491 + -1.1
3,045,491 + -1.1
3,045,491 + -0.8
3,045,491 + -1.2
3,045,491 + -1.0
3,045,491 + -1.4
3,045,499 - -1.3
3,045,499 - -1.2
3,045,499 - -2.5
3,045,499 - -1.6
3,045,501 + -1.3
3,045,501 + -2.5
3,045,501 + -1.3
3,045,501 + -1.8
3,045,501 + -1.5
3,045,501 + -1.6
3,045,509 - -1.3
3,045,509 - -0.6
3,045,509 - -1.8
3,045,514 - -1.5
3,045,556 + -1.0
3,045,563 + -1.9
3,045,736 - MPMX20_02899 0.13 -1.5
3,045,738 + MPMX20_02899 0.13 -0.1
3,045,738 + MPMX20_02899 0.13 -2.9
3,045,738 + MPMX20_02899 0.13 -2.2
3,045,746 - MPMX20_02899 0.14 -0.7
3,045,808 + MPMX20_02899 0.23 -0.2
3,045,886 + MPMX20_02899 0.35 -1.5
3,045,942 + MPMX20_02899 0.43 -0.7
3,045,961 + MPMX20_02899 0.46 -0.3
3,045,964 - MPMX20_02899 0.46 -1.4
3,046,073 - MPMX20_02899 0.62 -0.3
3,046,109 + MPMX20_02899 0.67 -0.9
3,046,126 + MPMX20_02899 0.70 -6.0
3,046,273 + -0.7
3,046,286 - -1.0
3,046,286 - -1.1
3,046,476 + -4.1
3,046,506 + -2.2
3,046,509 - -0.4
3,046,514 - -1.1
3,046,514 - -2.1
3,046,527 + -2.2
3,046,545 - MPMX20_02901 0.12 -1.6
3,046,615 - MPMX20_02901 0.24 -1.9
3,046,627 + MPMX20_02901 0.26 -2.2
3,046,627 + MPMX20_02901 0.26 -1.9
3,046,635 - MPMX20_02901 0.27 -0.5
3,046,665 - MPMX20_02901 0.32 -1.1
3,046,671 + MPMX20_02901 0.33 -2.4
3,046,672 - MPMX20_02901 0.33 -1.8
3,046,697 + MPMX20_02901 0.37 -1.5
3,046,699 + MPMX20_02901 0.38 -2.3
3,046,699 + MPMX20_02901 0.38 -2.3
3,046,707 - MPMX20_02901 0.39 -1.5
3,046,768 + MPMX20_02901 0.49 -1.4
3,046,776 - MPMX20_02901 0.50 -2.3
3,046,785 + MPMX20_02901 0.52 -1.9
3,046,862 - MPMX20_02901 0.64 -2.7
3,046,881 - MPMX20_02901 0.67 -2.1
3,046,881 - MPMX20_02901 0.67 -2.9
3,046,918 + MPMX20_02901 0.73 -1.3
3,046,938 + MPMX20_02901 0.77 -3.5
3,046,938 + MPMX20_02901 0.77 -1.4
3,046,938 + MPMX20_02901 0.77 -1.7
3,046,946 - MPMX20_02901 0.78 -1.3
3,046,946 - MPMX20_02901 0.78 -0.6
3,046,946 - MPMX20_02901 0.78 -1.5
3,046,946 - MPMX20_02901 0.78 -1.5
3,046,946 - MPMX20_02901 0.78 -1.4
3,046,946 - MPMX20_02901 0.78 -1.4
3,046,946 - MPMX20_02901 0.78 -0.3
3,046,975 + MPMX20_02901 0.83 -2.3
3,046,983 - MPMX20_02901 0.84 -0.8
3,046,987 + MPMX20_02901 0.85 -3.2
3,046,993 - MPMX20_02901 0.86 -0.4
3,046,995 - MPMX20_02901 0.86 -1.6
3,047,044 - -1.4
3,047,088 + -1.7
3,047,089 + -1.9
3,047,097 - -1.2
3,047,097 - -1.1
3,047,097 - -2.4
3,047,168 - MPMX20_02902 0.14 -2.1
3,047,209 + MPMX20_02902 0.20 -2.5
3,047,235 - MPMX20_02902 0.24 -1.6
3,047,249 + MPMX20_02902 0.26 -1.2
3,047,249 + MPMX20_02902 0.26 -1.7
3,047,313 + MPMX20_02902 0.36 -1.9

Or see this region's nucleotide sequence