Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02891

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02890 and MPMX20_02891 are separated by 11 nucleotidesMPMX20_02891 and MPMX20_02892 overlap by 1 nucleotidesMPMX20_02892 and MPMX20_02893 are separated by 3 nucleotidesMPMX20_02893 and MPMX20_02894 are separated by 146 nucleotides MPMX20_02890: MPMX20_02890 - hypothetical protein, at 3,039,420 to 3,040,877 _02890 MPMX20_02891: MPMX20_02891 - hypothetical protein, at 3,040,889 to 3,042,361 _02891 MPMX20_02892: MPMX20_02892 - hypothetical protein, at 3,042,361 to 3,042,876 _02892 MPMX20_02893: MPMX20_02893 - hypothetical protein, at 3,042,880 to 3,043,083 _02893 MPMX20_02894: MPMX20_02894 - hypothetical protein, at 3,043,230 to 3,043,439 _02894 Position (kb) 3040 3041 3042 3043Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3039.956 kb on + strand, within MPMX20_02890at 3039.965 kb on - strand, within MPMX20_02890at 3039.966 kb on + strand, within MPMX20_02890at 3039.976 kb on + strand, within MPMX20_02890at 3040.161 kb on - strand, within MPMX20_02890at 3040.175 kb on - strand, within MPMX20_02890at 3040.175 kb on - strand, within MPMX20_02890at 3040.175 kb on - strand, within MPMX20_02890at 3040.222 kb on - strand, within MPMX20_02890at 3040.256 kb on + strand, within MPMX20_02890at 3040.256 kb on + strand, within MPMX20_02890at 3040.306 kb on + strand, within MPMX20_02890at 3040.325 kb on - strand, within MPMX20_02890at 3040.438 kb on + strand, within MPMX20_02890at 3040.471 kb on - strand, within MPMX20_02890at 3040.483 kb on + strand, within MPMX20_02890at 3040.491 kb on - strand, within MPMX20_02890at 3040.522 kb on + strand, within MPMX20_02890at 3040.571 kb on + strand, within MPMX20_02890at 3040.621 kb on - strand, within MPMX20_02890at 3040.749 kb on + strandat 3040.796 kb on - strandat 3040.818 kb on + strandat 3040.830 kb on + strandat 3040.861 kb on - strandat 3040.869 kb on - strandat 3040.885 kb on - strandat 3040.885 kb on - strandat 3040.912 kb on + strandat 3040.912 kb on + strandat 3040.912 kb on + strandat 3040.941 kb on - strandat 3041.031 kb on + strandat 3041.043 kb on + strand, within MPMX20_02891at 3041.055 kb on + strand, within MPMX20_02891at 3041.068 kb on + strand, within MPMX20_02891at 3041.127 kb on + strand, within MPMX20_02891at 3041.154 kb on + strand, within MPMX20_02891at 3041.159 kb on + strand, within MPMX20_02891at 3041.217 kb on + strand, within MPMX20_02891at 3041.250 kb on + strand, within MPMX20_02891at 3041.250 kb on + strand, within MPMX20_02891at 3041.250 kb on + strand, within MPMX20_02891at 3041.303 kb on + strand, within MPMX20_02891at 3041.303 kb on + strand, within MPMX20_02891at 3041.341 kb on + strand, within MPMX20_02891at 3041.352 kb on + strand, within MPMX20_02891at 3041.379 kb on + strand, within MPMX20_02891at 3041.385 kb on + strand, within MPMX20_02891at 3041.576 kb on - strand, within MPMX20_02891at 3041.685 kb on + strand, within MPMX20_02891at 3041.740 kb on + strand, within MPMX20_02891at 3041.742 kb on + strand, within MPMX20_02891at 3041.742 kb on + strand, within MPMX20_02891at 3041.742 kb on + strand, within MPMX20_02891at 3041.742 kb on + strand, within MPMX20_02891at 3041.742 kb on + strand, within MPMX20_02891at 3041.742 kb on + strand, within MPMX20_02891at 3041.742 kb on + strand, within MPMX20_02891at 3041.750 kb on - strand, within MPMX20_02891at 3041.750 kb on - strand, within MPMX20_02891at 3041.750 kb on - strand, within MPMX20_02891at 3041.765 kb on + strand, within MPMX20_02891at 3041.795 kb on + strand, within MPMX20_02891at 3041.810 kb on + strand, within MPMX20_02891at 3041.812 kb on + strand, within MPMX20_02891at 3041.812 kb on + strand, within MPMX20_02891at 3041.815 kb on + strand, within MPMX20_02891at 3041.846 kb on + strand, within MPMX20_02891at 3041.848 kb on - strand, within MPMX20_02891at 3041.969 kb on + strand, within MPMX20_02891at 3041.969 kb on + strand, within MPMX20_02891at 3041.989 kb on + strand, within MPMX20_02891at 3042.168 kb on + strand, within MPMX20_02891at 3042.176 kb on - strand, within MPMX20_02891at 3042.183 kb on - strand, within MPMX20_02891at 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.258 kb on - strandat 3042.263 kb on + strandat 3042.284 kb on - strandat 3042.284 kb on - strandat 3042.284 kb on - strandat 3042.368 kb on + strandat 3042.384 kb on - strandat 3042.390 kb on + strandat 3042.390 kb on + strandat 3042.398 kb on - strandat 3042.399 kb on + strandat 3042.423 kb on + strand, within MPMX20_02892at 3042.436 kb on + strand, within MPMX20_02892at 3042.436 kb on + strand, within MPMX20_02892at 3042.436 kb on - strand, within MPMX20_02892at 3042.451 kb on - strand, within MPMX20_02892at 3042.485 kb on - strand, within MPMX20_02892at 3042.566 kb on - strand, within MPMX20_02892at 3042.610 kb on - strand, within MPMX20_02892at 3042.628 kb on - strand, within MPMX20_02892at 3042.658 kb on + strand, within MPMX20_02892at 3042.662 kb on + strand, within MPMX20_02892at 3042.727 kb on - strand, within MPMX20_02892at 3042.727 kb on - strand, within MPMX20_02892at 3042.732 kb on - strand, within MPMX20_02892at 3042.732 kb on - strand, within MPMX20_02892at 3042.755 kb on - strand, within MPMX20_02892at 3042.769 kb on + strand, within MPMX20_02892at 3042.769 kb on + strand, within MPMX20_02892at 3042.769 kb on + strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.786 kb on + strand, within MPMX20_02892at 3042.787 kb on + strand, within MPMX20_02892at 3042.794 kb on - strand, within MPMX20_02892at 3042.795 kb on - strand, within MPMX20_02892at 3042.935 kb on + strand, within MPMX20_02893at 3042.938 kb on - strand, within MPMX20_02893at 3042.938 kb on - strand, within MPMX20_02893at 3042.953 kb on - strand, within MPMX20_02893at 3042.953 kb on - strand, within MPMX20_02893at 3043.011 kb on + strand, within MPMX20_02893at 3043.018 kb on + strand, within MPMX20_02893at 3043.126 kb on - strandat 3043.126 kb on - strandat 3043.134 kb on - strandat 3043.134 kb on - strandat 3043.134 kb on - strandat 3043.145 kb on - strandat 3043.151 kb on + strandat 3043.159 kb on + strandat 3043.180 kb on + strandat 3043.180 kb on + strandat 3043.188 kb on - strandat 3043.190 kb on - strandat 3043.206 kb on + strandat 3043.206 kb on + strandat 3043.206 kb on + strandat 3043.229 kb on - strandat 3043.348 kb on - strand, within MPMX20_02894

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,039,956 + MPMX20_02890 0.37 -0.7
3,039,965 - MPMX20_02890 0.37 -2.0
3,039,966 + MPMX20_02890 0.37 -2.0
3,039,976 + MPMX20_02890 0.38 -1.6
3,040,161 - MPMX20_02890 0.51 -1.2
3,040,175 - MPMX20_02890 0.52 -2.3
3,040,175 - MPMX20_02890 0.52 -3.6
3,040,175 - MPMX20_02890 0.52 -2.9
3,040,222 - MPMX20_02890 0.55 -1.3
3,040,256 + MPMX20_02890 0.57 -2.2
3,040,256 + MPMX20_02890 0.57 -3.1
3,040,306 + MPMX20_02890 0.61 -2.9
3,040,325 - MPMX20_02890 0.62 -3.0
3,040,438 + MPMX20_02890 0.70 -1.4
3,040,471 - MPMX20_02890 0.72 -1.7
3,040,483 + MPMX20_02890 0.73 -1.4
3,040,491 - MPMX20_02890 0.73 -1.2
3,040,522 + MPMX20_02890 0.76 -1.4
3,040,571 + MPMX20_02890 0.79 -2.0
3,040,621 - MPMX20_02890 0.82 -1.5
3,040,749 + -0.8
3,040,796 - -2.5
3,040,818 + -1.1
3,040,830 + -1.1
3,040,861 - -1.3
3,040,869 - -2.2
3,040,885 - -1.5
3,040,885 - -1.4
3,040,912 + -2.0
3,040,912 + -1.3
3,040,912 + -1.7
3,040,941 - -4.0
3,041,031 + -1.8
3,041,043 + MPMX20_02891 0.10 -2.3
3,041,055 + MPMX20_02891 0.11 -0.8
3,041,068 + MPMX20_02891 0.12 -1.7
3,041,127 + MPMX20_02891 0.16 -1.4
3,041,154 + MPMX20_02891 0.18 -0.9
3,041,159 + MPMX20_02891 0.18 -2.0
3,041,217 + MPMX20_02891 0.22 -1.0
3,041,250 + MPMX20_02891 0.25 -2.9
3,041,250 + MPMX20_02891 0.25 -2.1
3,041,250 + MPMX20_02891 0.25 -1.3
3,041,303 + MPMX20_02891 0.28 -1.2
3,041,303 + MPMX20_02891 0.28 -1.7
3,041,341 + MPMX20_02891 0.31 -1.5
3,041,352 + MPMX20_02891 0.31 -2.0
3,041,379 + MPMX20_02891 0.33 -1.6
3,041,385 + MPMX20_02891 0.34 -1.1
3,041,576 - MPMX20_02891 0.47 -0.5
3,041,685 + MPMX20_02891 0.54 -1.9
3,041,740 + MPMX20_02891 0.58 -1.8
3,041,742 + MPMX20_02891 0.58 -1.4
3,041,742 + MPMX20_02891 0.58 -1.5
3,041,742 + MPMX20_02891 0.58 -0.9
3,041,742 + MPMX20_02891 0.58 -1.5
3,041,742 + MPMX20_02891 0.58 +0.5
3,041,742 + MPMX20_02891 0.58 -2.3
3,041,742 + MPMX20_02891 0.58 -1.2
3,041,750 - MPMX20_02891 0.58 -2.6
3,041,750 - MPMX20_02891 0.58 -2.1
3,041,750 - MPMX20_02891 0.58 -1.8
3,041,765 + MPMX20_02891 0.59 -1.8
3,041,795 + MPMX20_02891 0.62 -1.5
3,041,810 + MPMX20_02891 0.63 -1.3
3,041,812 + MPMX20_02891 0.63 -1.7
3,041,812 + MPMX20_02891 0.63 -2.4
3,041,815 + MPMX20_02891 0.63 -1.5
3,041,846 + MPMX20_02891 0.65 -1.6
3,041,848 - MPMX20_02891 0.65 -2.6
3,041,969 + MPMX20_02891 0.73 -1.5
3,041,969 + MPMX20_02891 0.73 -1.2
3,041,989 + MPMX20_02891 0.75 -2.3
3,042,168 + MPMX20_02891 0.87 -2.5
3,042,176 - MPMX20_02891 0.87 -1.0
3,042,183 - MPMX20_02891 0.88 -1.5
3,042,250 + -1.5
3,042,250 + -1.2
3,042,250 + -0.9
3,042,250 + -1.9
3,042,250 + -1.5
3,042,250 + -3.0
3,042,258 - -1.7
3,042,263 + -1.7
3,042,284 - -1.9
3,042,284 - -1.9
3,042,284 - -1.7
3,042,368 + -1.6
3,042,384 - -2.0
3,042,390 + -2.2
3,042,390 + -1.0
3,042,398 - -1.8
3,042,399 + -1.5
3,042,423 + MPMX20_02892 0.12 +0.5
3,042,436 + MPMX20_02892 0.15 -1.7
3,042,436 + MPMX20_02892 0.15 -1.4
3,042,436 - MPMX20_02892 0.15 -1.5
3,042,451 - MPMX20_02892 0.17 -1.7
3,042,485 - MPMX20_02892 0.24 -1.8
3,042,566 - MPMX20_02892 0.40 -1.4
3,042,610 - MPMX20_02892 0.48 -1.6
3,042,628 - MPMX20_02892 0.52 -1.6
3,042,658 + MPMX20_02892 0.58 -1.2
3,042,662 + MPMX20_02892 0.58 -1.1
3,042,727 - MPMX20_02892 0.71 -1.2
3,042,727 - MPMX20_02892 0.71 -1.5
3,042,732 - MPMX20_02892 0.72 -1.7
3,042,732 - MPMX20_02892 0.72 -1.9
3,042,755 - MPMX20_02892 0.76 -1.9
3,042,769 + MPMX20_02892 0.79 -2.4
3,042,769 + MPMX20_02892 0.79 -1.7
3,042,769 + MPMX20_02892 0.79 -1.4
3,042,777 - MPMX20_02892 0.81 -1.7
3,042,777 - MPMX20_02892 0.81 -1.7
3,042,777 - MPMX20_02892 0.81 -1.6
3,042,777 - MPMX20_02892 0.81 -1.8
3,042,786 + MPMX20_02892 0.82 -1.4
3,042,787 + MPMX20_02892 0.83 -1.7
3,042,794 - MPMX20_02892 0.84 -1.0
3,042,795 - MPMX20_02892 0.84 -3.8
3,042,935 + MPMX20_02893 0.27 -1.4
3,042,938 - MPMX20_02893 0.28 -1.3
3,042,938 - MPMX20_02893 0.28 -1.1
3,042,953 - MPMX20_02893 0.36 -0.4
3,042,953 - MPMX20_02893 0.36 -1.8
3,043,011 + MPMX20_02893 0.64 -1.1
3,043,018 + MPMX20_02893 0.68 +0.4
3,043,126 - -1.6
3,043,126 - -1.0
3,043,134 - -0.4
3,043,134 - -2.6
3,043,134 - -0.9
3,043,145 - -1.6
3,043,151 + -0.6
3,043,159 + -1.2
3,043,180 + -0.7
3,043,180 + -0.8
3,043,188 - -1.0
3,043,190 - -1.1
3,043,206 + -1.0
3,043,206 + -1.0
3,043,206 + -2.3
3,043,229 - -0.7
3,043,348 - MPMX20_02894 0.56 -2.3

Or see this region's nucleotide sequence