Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02884

Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02881 and MPMX20_02882 overlap by 1 nucleotidesMPMX20_02882 and MPMX20_02883 are separated by 2 nucleotidesMPMX20_02883 and MPMX20_02884 are separated by 11 nucleotidesMPMX20_02884 and MPMX20_02885 are separated by 11 nucleotidesMPMX20_02885 and MPMX20_02886 are separated by 3 nucleotides MPMX20_02881: MPMX20_02881 - hypothetical protein, at 3,034,083 to 3,034,253 _02881 MPMX20_02882: MPMX20_02882 - hypothetical protein, at 3,034,253 to 3,034,633 _02882 MPMX20_02883: MPMX20_02883 - hypothetical protein, at 3,034,636 to 3,035,001 _02883 MPMX20_02884: MPMX20_02884 - hypothetical protein, at 3,035,013 to 3,036,098 _02884 MPMX20_02885: MPMX20_02885 - hypothetical protein, at 3,036,110 to 3,036,541 _02885 MPMX20_02886: MPMX20_02886 - hypothetical protein, at 3,036,545 to 3,037,942 _02886 Position (kb) 3035 3036 3037Strain fitness (log2 ratio) -3 -2 -1 0 1at 3034.111 kb on - strand, within MPMX20_02881at 3034.111 kb on - strand, within MPMX20_02881at 3034.171 kb on + strand, within MPMX20_02881at 3034.206 kb on - strand, within MPMX20_02881at 3034.240 kb on + strandat 3034.267 kb on - strandat 3034.268 kb on - strandat 3034.287 kb on + strandat 3034.287 kb on - strandat 3034.295 kb on - strand, within MPMX20_02882at 3034.350 kb on - strand, within MPMX20_02882at 3034.367 kb on + strand, within MPMX20_02882at 3034.378 kb on - strand, within MPMX20_02882at 3034.452 kb on - strand, within MPMX20_02882at 3034.488 kb on - strand, within MPMX20_02882at 3034.496 kb on - strand, within MPMX20_02882at 3034.503 kb on - strand, within MPMX20_02882at 3034.503 kb on - strand, within MPMX20_02882at 3034.504 kb on - strand, within MPMX20_02882at 3034.570 kb on + strand, within MPMX20_02882at 3034.570 kb on + strand, within MPMX20_02882at 3034.580 kb on + strand, within MPMX20_02882at 3034.588 kb on - strand, within MPMX20_02882at 3034.678 kb on - strand, within MPMX20_02883at 3034.678 kb on - strand, within MPMX20_02883at 3034.678 kb on - strand, within MPMX20_02883at 3034.683 kb on - strand, within MPMX20_02883at 3034.721 kb on + strand, within MPMX20_02883at 3034.723 kb on - strand, within MPMX20_02883at 3034.728 kb on - strand, within MPMX20_02883at 3034.760 kb on - strand, within MPMX20_02883at 3034.764 kb on + strand, within MPMX20_02883at 3034.803 kb on + strand, within MPMX20_02883at 3034.823 kb on + strand, within MPMX20_02883at 3034.823 kb on + strand, within MPMX20_02883at 3034.880 kb on - strand, within MPMX20_02883at 3034.899 kb on + strand, within MPMX20_02883at 3034.961 kb on - strand, within MPMX20_02883at 3034.963 kb on + strand, within MPMX20_02883at 3034.972 kb on - strandat 3034.977 kb on - strandat 3035.009 kb on + strandat 3035.036 kb on - strandat 3035.036 kb on - strandat 3035.047 kb on - strandat 3035.078 kb on + strandat 3035.086 kb on - strandat 3035.120 kb on - strandat 3035.203 kb on + strand, within MPMX20_02884at 3035.236 kb on + strand, within MPMX20_02884at 3035.264 kb on + strand, within MPMX20_02884at 3035.277 kb on - strand, within MPMX20_02884at 3035.279 kb on + strand, within MPMX20_02884at 3035.335 kb on - strand, within MPMX20_02884at 3035.337 kb on + strand, within MPMX20_02884at 3035.337 kb on + strand, within MPMX20_02884at 3035.337 kb on + strand, within MPMX20_02884at 3035.340 kb on - strand, within MPMX20_02884at 3035.345 kb on - strand, within MPMX20_02884at 3035.366 kb on + strand, within MPMX20_02884at 3035.374 kb on + strand, within MPMX20_02884at 3035.374 kb on + strand, within MPMX20_02884at 3035.382 kb on - strand, within MPMX20_02884at 3035.416 kb on + strand, within MPMX20_02884at 3035.424 kb on - strand, within MPMX20_02884at 3035.447 kb on + strand, within MPMX20_02884at 3035.447 kb on + strand, within MPMX20_02884at 3035.490 kb on + strand, within MPMX20_02884at 3035.493 kb on - strand, within MPMX20_02884at 3035.535 kb on - strand, within MPMX20_02884at 3035.551 kb on + strand, within MPMX20_02884at 3035.585 kb on + strand, within MPMX20_02884at 3035.599 kb on - strand, within MPMX20_02884at 3035.630 kb on - strand, within MPMX20_02884at 3035.635 kb on - strand, within MPMX20_02884at 3035.687 kb on - strand, within MPMX20_02884at 3035.702 kb on + strand, within MPMX20_02884at 3035.734 kb on + strand, within MPMX20_02884at 3035.793 kb on + strand, within MPMX20_02884at 3035.852 kb on + strand, within MPMX20_02884at 3035.879 kb on + strand, within MPMX20_02884at 3035.989 kb on + strand, within MPMX20_02884at 3035.989 kb on + strand, within MPMX20_02884at 3035.997 kb on - strandat 3036.046 kb on - strandat 3036.049 kb on + strandat 3036.081 kb on - strandat 3036.103 kb on - strandat 3036.149 kb on + strandat 3036.149 kb on + strandat 3036.157 kb on - strand, within MPMX20_02885at 3036.190 kb on + strand, within MPMX20_02885at 3036.204 kb on + strand, within MPMX20_02885at 3036.227 kb on + strand, within MPMX20_02885at 3036.227 kb on + strand, within MPMX20_02885at 3036.227 kb on + strand, within MPMX20_02885at 3036.227 kb on + strand, within MPMX20_02885at 3036.227 kb on + strand, within MPMX20_02885at 3036.235 kb on - strand, within MPMX20_02885at 3036.235 kb on - strand, within MPMX20_02885at 3036.287 kb on - strand, within MPMX20_02885at 3036.315 kb on - strand, within MPMX20_02885at 3036.315 kb on - strand, within MPMX20_02885at 3036.480 kb on - strand, within MPMX20_02885at 3036.607 kb on + strandat 3036.610 kb on - strandat 3036.615 kb on - strandat 3036.615 kb on - strandat 3036.615 kb on - strandat 3036.626 kb on - strandat 3036.626 kb on - strandat 3036.677 kb on + strandat 3036.684 kb on + strandat 3036.760 kb on - strand, within MPMX20_02886at 3036.767 kb on + strand, within MPMX20_02886at 3036.825 kb on + strand, within MPMX20_02886at 3036.826 kb on - strand, within MPMX20_02886at 3036.964 kb on - strand, within MPMX20_02886at 3037.083 kb on + strand, within MPMX20_02886at 3037.091 kb on - strand, within MPMX20_02886

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Per-strain Table

Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
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3,034,111 - MPMX20_02881 0.16 -1.4
3,034,111 - MPMX20_02881 0.16 -1.1
3,034,171 + MPMX20_02881 0.51 -1.7
3,034,206 - MPMX20_02881 0.72 -0.9
3,034,240 + -1.3
3,034,267 - +0.2
3,034,268 - -0.4
3,034,287 + -0.2
3,034,287 - -0.5
3,034,295 - MPMX20_02882 0.11 -0.8
3,034,350 - MPMX20_02882 0.25 +0.0
3,034,367 + MPMX20_02882 0.30 -0.4
3,034,378 - MPMX20_02882 0.33 -0.3
3,034,452 - MPMX20_02882 0.52 -1.0
3,034,488 - MPMX20_02882 0.62 -0.5
3,034,496 - MPMX20_02882 0.64 -0.1
3,034,503 - MPMX20_02882 0.66 -0.4
3,034,503 - MPMX20_02882 0.66 -0.5
3,034,504 - MPMX20_02882 0.66 +0.1
3,034,570 + MPMX20_02882 0.83 -1.4
3,034,570 + MPMX20_02882 0.83 -0.6
3,034,580 + MPMX20_02882 0.86 -0.1
3,034,588 - MPMX20_02882 0.88 -0.3
3,034,678 - MPMX20_02883 0.11 -1.5
3,034,678 - MPMX20_02883 0.11 -1.0
3,034,678 - MPMX20_02883 0.11 -1.9
3,034,683 - MPMX20_02883 0.13 -1.5
3,034,721 + MPMX20_02883 0.23 -3.0
3,034,723 - MPMX20_02883 0.24 -1.8
3,034,728 - MPMX20_02883 0.25 -1.2
3,034,760 - MPMX20_02883 0.34 -1.5
3,034,764 + MPMX20_02883 0.35 -1.5
3,034,803 + MPMX20_02883 0.46 -3.6
3,034,823 + MPMX20_02883 0.51 -1.2
3,034,823 + MPMX20_02883 0.51 -3.2
3,034,880 - MPMX20_02883 0.67 -1.9
3,034,899 + MPMX20_02883 0.72 -1.9
3,034,961 - MPMX20_02883 0.89 -0.8
3,034,963 + MPMX20_02883 0.89 -3.0
3,034,972 - -1.3
3,034,977 - -0.9
3,035,009 + -1.3
3,035,036 - -1.2
3,035,036 - -1.9
3,035,047 - -2.2
3,035,078 + -1.3
3,035,086 - -1.4
3,035,120 - -1.3
3,035,203 + MPMX20_02884 0.17 -1.4
3,035,236 + MPMX20_02884 0.21 -1.8
3,035,264 + MPMX20_02884 0.23 -1.5
3,035,277 - MPMX20_02884 0.24 -1.9
3,035,279 + MPMX20_02884 0.24 -1.3
3,035,335 - MPMX20_02884 0.30 -1.8
3,035,337 + MPMX20_02884 0.30 -1.0
3,035,337 + MPMX20_02884 0.30 -3.0
3,035,337 + MPMX20_02884 0.30 -1.5
3,035,340 - MPMX20_02884 0.30 -0.6
3,035,345 - MPMX20_02884 0.31 -1.1
3,035,366 + MPMX20_02884 0.33 -1.5
3,035,374 + MPMX20_02884 0.33 -1.7
3,035,374 + MPMX20_02884 0.33 -1.4
3,035,382 - MPMX20_02884 0.34 -1.9
3,035,416 + MPMX20_02884 0.37 -1.5
3,035,424 - MPMX20_02884 0.38 -1.4
3,035,447 + MPMX20_02884 0.40 -1.5
3,035,447 + MPMX20_02884 0.40 -1.5
3,035,490 + MPMX20_02884 0.44 -1.7
3,035,493 - MPMX20_02884 0.44 -1.3
3,035,535 - MPMX20_02884 0.48 -1.9
3,035,551 + MPMX20_02884 0.50 -1.4
3,035,585 + MPMX20_02884 0.53 -0.2
3,035,599 - MPMX20_02884 0.54 -1.6
3,035,630 - MPMX20_02884 0.57 -0.3
3,035,635 - MPMX20_02884 0.57 -1.2
3,035,687 - MPMX20_02884 0.62 -1.3
3,035,702 + MPMX20_02884 0.63 -1.4
3,035,734 + MPMX20_02884 0.66 -1.5
3,035,793 + MPMX20_02884 0.72 -1.2
3,035,852 + MPMX20_02884 0.77 -2.1
3,035,879 + MPMX20_02884 0.80 -1.5
3,035,989 + MPMX20_02884 0.90 -1.0
3,035,989 + MPMX20_02884 0.90 -1.5
3,035,997 - -1.8
3,036,046 - -1.3
3,036,049 + -2.4
3,036,081 - -1.3
3,036,103 - -1.0
3,036,149 + -1.7
3,036,149 + -1.7
3,036,157 - MPMX20_02885 0.11 -1.5
3,036,190 + MPMX20_02885 0.19 -2.0
3,036,204 + MPMX20_02885 0.22 -2.0
3,036,227 + MPMX20_02885 0.27 -2.0
3,036,227 + MPMX20_02885 0.27 -0.2
3,036,227 + MPMX20_02885 0.27 -1.9
3,036,227 + MPMX20_02885 0.27 -1.5
3,036,227 + MPMX20_02885 0.27 -2.1
3,036,235 - MPMX20_02885 0.29 -2.6
3,036,235 - MPMX20_02885 0.29 -1.1
3,036,287 - MPMX20_02885 0.41 -2.0
3,036,315 - MPMX20_02885 0.47 -1.9
3,036,315 - MPMX20_02885 0.47 -2.3
3,036,480 - MPMX20_02885 0.86 -1.3
3,036,607 + -0.5
3,036,610 - -3.2
3,036,615 - -1.4
3,036,615 - -1.5
3,036,615 - -1.5
3,036,626 - -1.4
3,036,626 - -1.6
3,036,677 + -1.7
3,036,684 + -0.9
3,036,760 - MPMX20_02886 0.15 -1.7
3,036,767 + MPMX20_02886 0.16 -1.5
3,036,825 + MPMX20_02886 0.20 -1.9
3,036,826 - MPMX20_02886 0.20 -1.6
3,036,964 - MPMX20_02886 0.30 -1.6
3,037,083 + MPMX20_02886 0.38 -1.1
3,037,091 - MPMX20_02886 0.39 -1.9

Or see this region's nucleotide sequence