Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02881 and MPMX20_02882 overlap by 1 nucleotides MPMX20_02882 and MPMX20_02883 are separated by 2 nucleotides MPMX20_02883 and MPMX20_02884 are separated by 11 nucleotides MPMX20_02884 and MPMX20_02885 are separated by 11 nucleotides MPMX20_02885 and MPMX20_02886 are separated by 3 nucleotides
MPMX20_02881: MPMX20_02881 - hypothetical protein, at 3,034,083 to 3,034,253
_02881
MPMX20_02882: MPMX20_02882 - hypothetical protein, at 3,034,253 to 3,034,633
_02882
MPMX20_02883: MPMX20_02883 - hypothetical protein, at 3,034,636 to 3,035,001
_02883
MPMX20_02884: MPMX20_02884 - hypothetical protein, at 3,035,013 to 3,036,098
_02884
MPMX20_02885: MPMX20_02885 - hypothetical protein, at 3,036,110 to 3,036,541
_02885
MPMX20_02886: MPMX20_02886 - hypothetical protein, at 3,036,545 to 3,037,942
_02886
Position (kb)
3035
3036
3037 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3034.111 kb on - strand, within MPMX20_02881 at 3034.111 kb on - strand, within MPMX20_02881 at 3034.171 kb on + strand, within MPMX20_02881 at 3034.206 kb on - strand, within MPMX20_02881 at 3034.240 kb on + strand at 3034.267 kb on - strand at 3034.268 kb on - strand at 3034.287 kb on + strand at 3034.287 kb on - strand at 3034.295 kb on - strand, within MPMX20_02882 at 3034.350 kb on - strand, within MPMX20_02882 at 3034.367 kb on + strand, within MPMX20_02882 at 3034.378 kb on - strand, within MPMX20_02882 at 3034.452 kb on - strand, within MPMX20_02882 at 3034.488 kb on - strand, within MPMX20_02882 at 3034.496 kb on - strand, within MPMX20_02882 at 3034.503 kb on - strand, within MPMX20_02882 at 3034.503 kb on - strand, within MPMX20_02882 at 3034.504 kb on - strand, within MPMX20_02882 at 3034.570 kb on + strand, within MPMX20_02882 at 3034.570 kb on + strand, within MPMX20_02882 at 3034.580 kb on + strand, within MPMX20_02882 at 3034.588 kb on - strand, within MPMX20_02882 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.683 kb on - strand, within MPMX20_02883 at 3034.721 kb on + strand, within MPMX20_02883 at 3034.723 kb on - strand, within MPMX20_02883 at 3034.728 kb on - strand, within MPMX20_02883 at 3034.760 kb on - strand, within MPMX20_02883 at 3034.764 kb on + strand, within MPMX20_02883 at 3034.803 kb on + strand, within MPMX20_02883 at 3034.823 kb on + strand, within MPMX20_02883 at 3034.823 kb on + strand, within MPMX20_02883 at 3034.880 kb on - strand, within MPMX20_02883 at 3034.899 kb on + strand, within MPMX20_02883 at 3034.961 kb on - strand, within MPMX20_02883 at 3034.963 kb on + strand, within MPMX20_02883 at 3034.972 kb on - strand at 3034.977 kb on - strand at 3035.009 kb on + strand at 3035.036 kb on - strand at 3035.036 kb on - strand at 3035.047 kb on - strand at 3035.078 kb on + strand at 3035.086 kb on - strand at 3035.120 kb on - strand at 3035.203 kb on + strand, within MPMX20_02884 at 3035.236 kb on + strand, within MPMX20_02884 at 3035.264 kb on + strand, within MPMX20_02884 at 3035.277 kb on - strand, within MPMX20_02884 at 3035.279 kb on + strand, within MPMX20_02884 at 3035.335 kb on - strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.340 kb on - strand, within MPMX20_02884 at 3035.345 kb on - strand, within MPMX20_02884 at 3035.366 kb on + strand, within MPMX20_02884 at 3035.374 kb on + strand, within MPMX20_02884 at 3035.374 kb on + strand, within MPMX20_02884 at 3035.382 kb on - strand, within MPMX20_02884 at 3035.416 kb on + strand, within MPMX20_02884 at 3035.424 kb on - strand, within MPMX20_02884 at 3035.447 kb on + strand, within MPMX20_02884 at 3035.447 kb on + strand, within MPMX20_02884 at 3035.490 kb on + strand, within MPMX20_02884 at 3035.493 kb on - strand, within MPMX20_02884 at 3035.535 kb on - strand, within MPMX20_02884 at 3035.551 kb on + strand, within MPMX20_02884 at 3035.585 kb on + strand, within MPMX20_02884 at 3035.599 kb on - strand, within MPMX20_02884 at 3035.630 kb on - strand, within MPMX20_02884 at 3035.635 kb on - strand, within MPMX20_02884 at 3035.687 kb on - strand, within MPMX20_02884 at 3035.702 kb on + strand, within MPMX20_02884 at 3035.734 kb on + strand, within MPMX20_02884 at 3035.793 kb on + strand, within MPMX20_02884 at 3035.852 kb on + strand, within MPMX20_02884 at 3035.879 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.997 kb on - strand at 3036.046 kb on - strand at 3036.049 kb on + strand at 3036.081 kb on - strand at 3036.103 kb on - strand at 3036.149 kb on + strand at 3036.149 kb on + strand at 3036.157 kb on - strand, within MPMX20_02885 at 3036.190 kb on + strand, within MPMX20_02885 at 3036.204 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.235 kb on - strand, within MPMX20_02885 at 3036.235 kb on - strand, within MPMX20_02885 at 3036.287 kb on - strand, within MPMX20_02885 at 3036.315 kb on - strand, within MPMX20_02885 at 3036.315 kb on - strand, within MPMX20_02885 at 3036.480 kb on - strand, within MPMX20_02885 at 3036.607 kb on + strand at 3036.610 kb on - strand at 3036.615 kb on - strand at 3036.615 kb on - strand at 3036.615 kb on - strand at 3036.626 kb on - strand at 3036.626 kb on - strand at 3036.677 kb on + strand at 3036.684 kb on + strand at 3036.760 kb on - strand, within MPMX20_02886 at 3036.767 kb on + strand, within MPMX20_02886 at 3036.825 kb on + strand, within MPMX20_02886 at 3036.826 kb on - strand, within MPMX20_02886 at 3036.964 kb on - strand, within MPMX20_02886 at 3037.083 kb on + strand, within MPMX20_02886 at 3037.091 kb on - strand, within MPMX20_02886
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,034,111 - MPMX20_02881 0.16 -1.4 3,034,111 - MPMX20_02881 0.16 -1.1 3,034,171 + MPMX20_02881 0.51 -1.7 3,034,206 - MPMX20_02881 0.72 -0.9 3,034,240 + -1.3 3,034,267 - +0.2 3,034,268 - -0.4 3,034,287 + -0.2 3,034,287 - -0.5 3,034,295 - MPMX20_02882 0.11 -0.8 3,034,350 - MPMX20_02882 0.25 +0.0 3,034,367 + MPMX20_02882 0.30 -0.4 3,034,378 - MPMX20_02882 0.33 -0.3 3,034,452 - MPMX20_02882 0.52 -1.0 3,034,488 - MPMX20_02882 0.62 -0.5 3,034,496 - MPMX20_02882 0.64 -0.1 3,034,503 - MPMX20_02882 0.66 -0.4 3,034,503 - MPMX20_02882 0.66 -0.5 3,034,504 - MPMX20_02882 0.66 +0.1 3,034,570 + MPMX20_02882 0.83 -1.4 3,034,570 + MPMX20_02882 0.83 -0.6 3,034,580 + MPMX20_02882 0.86 -0.1 3,034,588 - MPMX20_02882 0.88 -0.3 3,034,678 - MPMX20_02883 0.11 -1.5 3,034,678 - MPMX20_02883 0.11 -1.0 3,034,678 - MPMX20_02883 0.11 -1.9 3,034,683 - MPMX20_02883 0.13 -1.5 3,034,721 + MPMX20_02883 0.23 -3.0 3,034,723 - MPMX20_02883 0.24 -1.8 3,034,728 - MPMX20_02883 0.25 -1.2 3,034,760 - MPMX20_02883 0.34 -1.5 3,034,764 + MPMX20_02883 0.35 -1.5 3,034,803 + MPMX20_02883 0.46 -3.6 3,034,823 + MPMX20_02883 0.51 -1.2 3,034,823 + MPMX20_02883 0.51 -3.2 3,034,880 - MPMX20_02883 0.67 -1.9 3,034,899 + MPMX20_02883 0.72 -1.9 3,034,961 - MPMX20_02883 0.89 -0.8 3,034,963 + MPMX20_02883 0.89 -3.0 3,034,972 - -1.3 3,034,977 - -0.9 3,035,009 + -1.3 3,035,036 - -1.2 3,035,036 - -1.9 3,035,047 - -2.2 3,035,078 + -1.3 3,035,086 - -1.4 3,035,120 - -1.3 3,035,203 + MPMX20_02884 0.17 -1.4 3,035,236 + MPMX20_02884 0.21 -1.8 3,035,264 + MPMX20_02884 0.23 -1.5 3,035,277 - MPMX20_02884 0.24 -1.9 3,035,279 + MPMX20_02884 0.24 -1.3 3,035,335 - MPMX20_02884 0.30 -1.8 3,035,337 + MPMX20_02884 0.30 -1.0 3,035,337 + MPMX20_02884 0.30 -3.0 3,035,337 + MPMX20_02884 0.30 -1.5 3,035,340 - MPMX20_02884 0.30 -0.6 3,035,345 - MPMX20_02884 0.31 -1.1 3,035,366 + MPMX20_02884 0.33 -1.5 3,035,374 + MPMX20_02884 0.33 -1.7 3,035,374 + MPMX20_02884 0.33 -1.4 3,035,382 - MPMX20_02884 0.34 -1.9 3,035,416 + MPMX20_02884 0.37 -1.5 3,035,424 - MPMX20_02884 0.38 -1.4 3,035,447 + MPMX20_02884 0.40 -1.5 3,035,447 + MPMX20_02884 0.40 -1.5 3,035,490 + MPMX20_02884 0.44 -1.7 3,035,493 - MPMX20_02884 0.44 -1.3 3,035,535 - MPMX20_02884 0.48 -1.9 3,035,551 + MPMX20_02884 0.50 -1.4 3,035,585 + MPMX20_02884 0.53 -0.2 3,035,599 - MPMX20_02884 0.54 -1.6 3,035,630 - MPMX20_02884 0.57 -0.3 3,035,635 - MPMX20_02884 0.57 -1.2 3,035,687 - MPMX20_02884 0.62 -1.3 3,035,702 + MPMX20_02884 0.63 -1.4 3,035,734 + MPMX20_02884 0.66 -1.5 3,035,793 + MPMX20_02884 0.72 -1.2 3,035,852 + MPMX20_02884 0.77 -2.1 3,035,879 + MPMX20_02884 0.80 -1.5 3,035,989 + MPMX20_02884 0.90 -1.0 3,035,989 + MPMX20_02884 0.90 -1.5 3,035,997 - -1.8 3,036,046 - -1.3 3,036,049 + -2.4 3,036,081 - -1.3 3,036,103 - -1.0 3,036,149 + -1.7 3,036,149 + -1.7 3,036,157 - MPMX20_02885 0.11 -1.5 3,036,190 + MPMX20_02885 0.19 -2.0 3,036,204 + MPMX20_02885 0.22 -2.0 3,036,227 + MPMX20_02885 0.27 -2.0 3,036,227 + MPMX20_02885 0.27 -0.2 3,036,227 + MPMX20_02885 0.27 -1.9 3,036,227 + MPMX20_02885 0.27 -1.5 3,036,227 + MPMX20_02885 0.27 -2.1 3,036,235 - MPMX20_02885 0.29 -2.6 3,036,235 - MPMX20_02885 0.29 -1.1 3,036,287 - MPMX20_02885 0.41 -2.0 3,036,315 - MPMX20_02885 0.47 -1.9 3,036,315 - MPMX20_02885 0.47 -2.3 3,036,480 - MPMX20_02885 0.86 -1.3 3,036,607 + -0.5 3,036,610 - -3.2 3,036,615 - -1.4 3,036,615 - -1.5 3,036,615 - -1.5 3,036,626 - -1.4 3,036,626 - -1.6 3,036,677 + -1.7 3,036,684 + -0.9 3,036,760 - MPMX20_02886 0.15 -1.7 3,036,767 + MPMX20_02886 0.16 -1.5 3,036,825 + MPMX20_02886 0.20 -1.9 3,036,826 - MPMX20_02886 0.20 -1.6 3,036,964 - MPMX20_02886 0.30 -1.6 3,037,083 + MPMX20_02886 0.38 -1.1 3,037,091 - MPMX20_02886 0.39 -1.9
Or see this region's nucleotide sequence