Experiment: LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02876 and MPMX20_02877 are separated by 62 nucleotides MPMX20_02877 and MPMX20_02878 overlap by 4 nucleotides MPMX20_02878 and MPMX20_02879 are separated by 2 nucleotides MPMX20_02879 and MPMX20_02880 overlap by 1 nucleotides MPMX20_02880 and MPMX20_02881 are separated by 104 nucleotides MPMX20_02881 and MPMX20_02882 overlap by 1 nucleotides
MPMX20_02876: MPMX20_02876 - hypothetical protein, at 3,031,307 to 3,032,050
_02876
MPMX20_02877: MPMX20_02877 - hypothetical protein, at 3,032,113 to 3,032,496
_02877
MPMX20_02878: MPMX20_02878 - hypothetical protein, at 3,032,493 to 3,032,957
_02878
MPMX20_02879: MPMX20_02879 - hypothetical protein, at 3,032,960 to 3,033,310
_02879
MPMX20_02880: MPMX20_02880 - hypothetical protein, at 3,033,310 to 3,033,978
_02880
MPMX20_02881: MPMX20_02881 - hypothetical protein, at 3,034,083 to 3,034,253
_02881
MPMX20_02882: MPMX20_02882 - hypothetical protein, at 3,034,253 to 3,034,633
_02882
Position (kb)
3032
3033
3034 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3032.026 kb on + strand at 3032.197 kb on + strand, within MPMX20_02877 at 3032.197 kb on - strand, within MPMX20_02877 at 3032.206 kb on - strand, within MPMX20_02877 at 3032.233 kb on - strand, within MPMX20_02877 at 3032.239 kb on - strand, within MPMX20_02877 at 3032.244 kb on - strand, within MPMX20_02877 at 3032.262 kb on + strand, within MPMX20_02877 at 3032.279 kb on + strand, within MPMX20_02877 at 3032.325 kb on + strand, within MPMX20_02877 at 3032.332 kb on + strand, within MPMX20_02877 at 3032.333 kb on - strand, within MPMX20_02877 at 3032.357 kb on - strand, within MPMX20_02877 at 3032.366 kb on + strand, within MPMX20_02877 at 3032.482 kb on + strand at 3032.482 kb on + strand at 3032.490 kb on - strand at 3032.590 kb on - strand, within MPMX20_02878 at 3032.590 kb on - strand, within MPMX20_02878 at 3032.592 kb on - strand, within MPMX20_02878 at 3032.597 kb on - strand, within MPMX20_02878 at 3032.686 kb on + strand, within MPMX20_02878 at 3032.686 kb on + strand, within MPMX20_02878 at 3032.720 kb on - strand, within MPMX20_02878 at 3032.722 kb on + strand, within MPMX20_02878 at 3032.754 kb on + strand, within MPMX20_02878 at 3032.809 kb on - strand, within MPMX20_02878 at 3032.809 kb on - strand, within MPMX20_02878 at 3032.809 kb on - strand, within MPMX20_02878 at 3032.809 kb on - strand, within MPMX20_02878 at 3032.831 kb on - strand, within MPMX20_02878 at 3032.831 kb on - strand, within MPMX20_02878 at 3032.957 kb on + strand at 3032.966 kb on - strand at 3032.998 kb on + strand, within MPMX20_02879 at 3033.042 kb on + strand, within MPMX20_02879 at 3033.160 kb on - strand, within MPMX20_02879 at 3033.210 kb on + strand, within MPMX20_02879 at 3033.290 kb on - strand at 3033.290 kb on - strand at 3033.315 kb on - strand at 3033.315 kb on - strand at 3033.327 kb on - strand at 3033.351 kb on - strand at 3033.361 kb on - strand at 3033.361 kb on - strand at 3033.449 kb on + strand, within MPMX20_02880 at 3033.463 kb on + strand, within MPMX20_02880 at 3033.465 kb on + strand, within MPMX20_02880 at 3033.465 kb on + strand, within MPMX20_02880 at 3033.465 kb on + strand, within MPMX20_02880 at 3033.465 kb on + strand, within MPMX20_02880 at 3033.473 kb on - strand, within MPMX20_02880 at 3033.473 kb on - strand, within MPMX20_02880 at 3033.476 kb on + strand, within MPMX20_02880 at 3033.482 kb on + strand, within MPMX20_02880 at 3033.484 kb on - strand, within MPMX20_02880 at 3033.484 kb on - strand, within MPMX20_02880 at 3033.489 kb on - strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.538 kb on + strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.546 kb on - strand, within MPMX20_02880 at 3033.553 kb on + strand, within MPMX20_02880 at 3033.553 kb on + strand, within MPMX20_02880 at 3033.553 kb on + strand, within MPMX20_02880 at 3033.553 kb on + strand, within MPMX20_02880 at 3033.577 kb on + strand, within MPMX20_02880 at 3033.636 kb on + strand, within MPMX20_02880 at 3033.636 kb on + strand, within MPMX20_02880 at 3033.638 kb on - strand, within MPMX20_02880 at 3033.644 kb on - strand, within MPMX20_02880 at 3033.646 kb on + strand, within MPMX20_02880 at 3033.686 kb on - strand, within MPMX20_02880 at 3033.725 kb on - strand, within MPMX20_02880 at 3033.738 kb on - strand, within MPMX20_02880 at 3033.795 kb on - strand, within MPMX20_02880 at 3033.795 kb on - strand, within MPMX20_02880 at 3033.802 kb on + strand, within MPMX20_02880 at 3033.815 kb on - strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.826 kb on - strand, within MPMX20_02880 at 3033.833 kb on - strand, within MPMX20_02880 at 3033.839 kb on + strand, within MPMX20_02880 at 3033.859 kb on - strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.898 kb on - strand, within MPMX20_02880 at 3033.917 kb on - strand at 3033.952 kb on - strand at 3033.952 kb on - strand at 3033.972 kb on - strand at 3033.974 kb on + strand at 3033.981 kb on - strand at 3033.982 kb on - strand at 3034.003 kb on - strand at 3034.005 kb on + strand at 3034.111 kb on - strand, within MPMX20_02881 at 3034.111 kb on - strand, within MPMX20_02881 at 3034.171 kb on + strand, within MPMX20_02881 at 3034.206 kb on - strand, within MPMX20_02881 at 3034.240 kb on + strand at 3034.267 kb on - strand at 3034.268 kb on - strand at 3034.287 kb on + strand at 3034.287 kb on - strand at 3034.295 kb on - strand, within MPMX20_02882
Per-strain Table
Position Strand Gene LocusTag Fraction LB agar plate coculture with Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct remove 3,032,026 + -0.8 3,032,197 + MPMX20_02877 0.22 -0.7 3,032,197 - MPMX20_02877 0.22 -1.1 3,032,206 - MPMX20_02877 0.24 -0.9 3,032,233 - MPMX20_02877 0.31 -1.7 3,032,239 - MPMX20_02877 0.33 -0.9 3,032,244 - MPMX20_02877 0.34 -1.2 3,032,262 + MPMX20_02877 0.39 -1.0 3,032,279 + MPMX20_02877 0.43 -0.6 3,032,325 + MPMX20_02877 0.55 -2.0 3,032,332 + MPMX20_02877 0.57 -1.6 3,032,333 - MPMX20_02877 0.57 +0.3 3,032,357 - MPMX20_02877 0.64 -1.0 3,032,366 + MPMX20_02877 0.66 -0.8 3,032,482 + -1.0 3,032,482 + -1.7 3,032,490 - -1.3 3,032,590 - MPMX20_02878 0.21 -0.1 3,032,590 - MPMX20_02878 0.21 -1.5 3,032,592 - MPMX20_02878 0.21 -1.0 3,032,597 - MPMX20_02878 0.22 -0.6 3,032,686 + MPMX20_02878 0.42 -1.7 3,032,686 + MPMX20_02878 0.42 -1.0 3,032,720 - MPMX20_02878 0.49 -1.2 3,032,722 + MPMX20_02878 0.49 -0.7 3,032,754 + MPMX20_02878 0.56 -2.2 3,032,809 - MPMX20_02878 0.68 -0.8 3,032,809 - MPMX20_02878 0.68 -1.3 3,032,809 - MPMX20_02878 0.68 -1.2 3,032,809 - MPMX20_02878 0.68 -0.8 3,032,831 - MPMX20_02878 0.73 -1.0 3,032,831 - MPMX20_02878 0.73 -1.3 3,032,957 + -1.0 3,032,966 - -0.6 3,032,998 + MPMX20_02879 0.11 -0.7 3,033,042 + MPMX20_02879 0.23 -0.7 3,033,160 - MPMX20_02879 0.57 -2.9 3,033,210 + MPMX20_02879 0.71 -0.8 3,033,290 - -0.7 3,033,290 - -2.0 3,033,315 - -1.2 3,033,315 - -1.2 3,033,327 - -0.6 3,033,351 - -0.5 3,033,361 - -1.1 3,033,361 - -1.3 3,033,449 + MPMX20_02880 0.21 -0.4 3,033,463 + MPMX20_02880 0.23 -1.8 3,033,465 + MPMX20_02880 0.23 -1.2 3,033,465 + MPMX20_02880 0.23 -1.7 3,033,465 + MPMX20_02880 0.23 -1.9 3,033,465 + MPMX20_02880 0.23 -1.9 3,033,473 - MPMX20_02880 0.24 -0.9 3,033,473 - MPMX20_02880 0.24 -1.3 3,033,476 + MPMX20_02880 0.25 -1.6 3,033,482 + MPMX20_02880 0.26 -0.7 3,033,484 - MPMX20_02880 0.26 -1.3 3,033,484 - MPMX20_02880 0.26 -0.6 3,033,489 - MPMX20_02880 0.27 -1.6 3,033,538 + MPMX20_02880 0.34 -1.1 3,033,538 + MPMX20_02880 0.34 -1.4 3,033,538 + MPMX20_02880 0.34 -1.3 3,033,538 + MPMX20_02880 0.34 -0.9 3,033,538 + MPMX20_02880 0.34 -1.0 3,033,538 + MPMX20_02880 0.34 +0.1 3,033,538 + MPMX20_02880 0.34 -1.5 3,033,538 + MPMX20_02880 0.34 -1.6 3,033,538 + MPMX20_02880 0.34 -1.8 3,033,538 + MPMX20_02880 0.34 -1.2 3,033,538 + MPMX20_02880 0.34 -1.9 3,033,538 + MPMX20_02880 0.34 -0.6 3,033,538 + MPMX20_02880 0.34 -0.9 3,033,546 - MPMX20_02880 0.35 -1.5 3,033,546 - MPMX20_02880 0.35 -0.9 3,033,546 - MPMX20_02880 0.35 -1.5 3,033,546 - MPMX20_02880 0.35 -1.9 3,033,546 - MPMX20_02880 0.35 -1.0 3,033,546 - MPMX20_02880 0.35 -0.4 3,033,546 - MPMX20_02880 0.35 -0.7 3,033,546 - MPMX20_02880 0.35 -1.5 3,033,546 - MPMX20_02880 0.35 -1.2 3,033,546 - MPMX20_02880 0.35 -0.8 3,033,546 - MPMX20_02880 0.35 -1.2 3,033,546 - MPMX20_02880 0.35 -1.9 3,033,546 - MPMX20_02880 0.35 -1.3 3,033,553 + MPMX20_02880 0.36 -2.0 3,033,553 + MPMX20_02880 0.36 -1.0 3,033,553 + MPMX20_02880 0.36 -3.3 3,033,553 + MPMX20_02880 0.36 -1.6 3,033,577 + MPMX20_02880 0.40 +0.1 3,033,636 + MPMX20_02880 0.49 -1.3 3,033,636 + MPMX20_02880 0.49 -3.9 3,033,638 - MPMX20_02880 0.49 -2.4 3,033,644 - MPMX20_02880 0.50 -1.8 3,033,646 + MPMX20_02880 0.50 -1.3 3,033,686 - MPMX20_02880 0.56 -0.2 3,033,725 - MPMX20_02880 0.62 -1.3 3,033,738 - MPMX20_02880 0.64 -1.4 3,033,795 - MPMX20_02880 0.72 -0.8 3,033,795 - MPMX20_02880 0.72 -1.1 3,033,802 + MPMX20_02880 0.74 -0.9 3,033,815 - MPMX20_02880 0.75 -1.1 3,033,825 + MPMX20_02880 0.77 -0.5 3,033,825 + MPMX20_02880 0.77 -1.2 3,033,825 + MPMX20_02880 0.77 -1.8 3,033,825 + MPMX20_02880 0.77 -1.4 3,033,826 - MPMX20_02880 0.77 -1.2 3,033,833 - MPMX20_02880 0.78 -1.5 3,033,839 + MPMX20_02880 0.79 -1.3 3,033,859 - MPMX20_02880 0.82 -1.8 3,033,875 + MPMX20_02880 0.84 -1.2 3,033,875 + MPMX20_02880 0.84 -2.1 3,033,875 + MPMX20_02880 0.84 -1.0 3,033,898 - MPMX20_02880 0.88 -1.4 3,033,917 - +0.7 3,033,952 - -1.2 3,033,952 - -1.2 3,033,972 - -1.3 3,033,974 + -1.4 3,033,981 - -1.3 3,033,982 - -0.7 3,034,003 - -1.6 3,034,005 + -0.8 3,034,111 - MPMX20_02881 0.16 -1.4 3,034,111 - MPMX20_02881 0.16 -1.1 3,034,171 + MPMX20_02881 0.51 -1.7 3,034,206 - MPMX20_02881 0.72 -0.9 3,034,240 + -1.3 3,034,267 - +0.2 3,034,268 - -0.4 3,034,287 + -0.2 3,034,287 - -0.5 3,034,295 - MPMX20_02882 0.11 -0.8
Or see this region's nucleotide sequence